Wall clock time and date at job start Tue Mar 31 2020 14:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00072 * 2 1 4 4 H 1.09003 * 109.46768 * 8.78016 * 3 2 1 5 5 C 1.52998 * 109.47584 * 248.77871 * 3 2 1 6 6 N 1.46498 * 109.46792 * 62.31551 * 5 3 2 7 7 C 1.34780 * 119.99702 * 173.72988 * 6 5 3 8 8 O 1.21560 * 120.00039 * 0.02562 * 7 6 5 9 9 C 1.47855 * 120.00066 * 179.97438 * 7 6 5 10 10 C 1.39677 * 120.10404 * 0.03195 * 9 7 6 11 11 C 1.38031 * 120.04032 * 179.97438 * 10 9 7 12 12 C 1.38178 * 120.24733 * 359.97438 * 11 10 9 13 13 C 1.39178 * 120.19936 * 0.04247 * 12 11 10 14 14 S 1.76209 * 120.01971 * 180.02562 * 13 12 11 15 15 C 1.76195 * 99.99735 * 274.25160 * 14 13 12 16 16 H 1.08000 * 120.00542 * 5.04229 * 15 14 13 17 17 C 1.38731 * 119.99674 * 185.03348 * 15 14 13 18 18 N 1.31626 * 120.00183 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99845 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47320 * 90.00193 * 19 17 15 21 21 H 1.48500 * 109.47019 * 210.00201 * 19 17 15 22 22 H 1.48494 * 109.47106 * 330.00254 * 19 17 15 23 23 C 1.38870 * 119.96131 * 359.93453 * 13 12 11 24 24 C 1.53002 * 109.46955 * 128.77509 * 3 2 1 25 25 C 1.53009 * 109.46994 * 180.02562 * 24 3 2 26 26 C 1.52999 * 109.47364 * 300.00170 * 24 3 2 27 27 H 1.08995 * 109.47202 * 306.16959 * 1 2 3 28 28 H 1.08996 * 109.47713 * 66.17597 * 1 2 3 29 29 H 1.09006 * 109.47144 * 186.17156 * 1 2 3 30 30 H 1.08993 * 109.46695 * 302.31176 * 5 3 2 31 31 H 1.09005 * 109.46661 * 182.31524 * 5 3 2 32 32 H 0.96996 * 120.00348 * 353.73485 * 6 5 3 33 33 H 1.07998 * 119.97258 * 359.97073 * 10 9 7 34 34 H 1.08006 * 119.87985 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.90099 * 180.02562 * 12 11 10 36 36 H 0.96995 * 120.00061 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.12352 * 180.31541 * 23 13 12 38 38 H 1.08989 * 109.47049 * 60.00596 * 24 3 2 39 39 H 1.08996 * 109.46840 * 60.00117 * 25 24 3 40 40 H 1.08998 * 109.46616 * 179.97438 * 25 24 3 41 41 H 1.08993 * 109.46928 * 300.00092 * 25 24 3 42 42 H 1.09006 * 109.46658 * 59.99979 * 26 24 3 43 43 H 1.08998 * 109.47805 * 179.97438 * 26 24 3 44 44 H 1.08996 * 109.47566 * 300.00554 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2301 2.0505 0.1569 5 6 2.6947 1.5591 -1.3446 6 7 1.6962 1.5196 -2.4159 7 6 2.0474 1.8417 -3.6766 8 8 3.1928 2.1646 -3.9248 9 6 1.0399 1.8013 -4.7580 10 6 -0.2767 1.4303 -4.4753 11 6 -1.2164 1.3936 -5.4858 12 6 -0.8605 1.7235 -6.7795 13 6 0.4485 2.0943 -7.0726 14 16 0.8970 2.5147 -8.7240 15 6 1.2526 0.9112 -9.3620 16 1 1.0756 0.0365 -8.7538 17 6 1.7599 0.7724 -10.6458 18 7 1.9759 1.8385 -11.3870 19 14 2.1362 -0.9276 -11.3225 20 1 0.9333 -1.4654 -12.0072 21 1 3.2583 -0.8375 -12.2911 22 1 2.5164 -1.8313 -10.2072 23 6 1.4006 2.1346 -6.0625 24 6 3.0429 1.4039 1.1246 25 6 3.6648 2.8019 1.1250 26 6 2.3585 1.1503 2.4693 27 1 -0.3633 0.6065 0.8296 28 1 -0.3634 0.4151 -0.9400 29 1 -0.3634 -1.0218 0.1105 30 1 3.4467 0.7900 -1.5202 31 1 3.1731 2.5384 -1.3297 32 1 0.7823 1.2617 -2.2179 33 1 -0.5595 1.1720 -3.4656 34 1 -2.2338 1.1067 -5.2642 35 1 -1.6004 1.6932 -7.5657 36 1 2.3309 1.7414 -12.2844 37 1 2.4160 2.4269 -6.2861 38 1 3.8229 0.6590 0.9678 39 1 2.8846 3.5465 1.2821 40 1 4.4002 2.8721 1.9265 41 1 4.1524 2.9829 0.1672 42 1 1.9151 0.1545 2.4692 43 1 3.0942 1.2200 3.2705 44 1 1.5784 1.8952 2.6261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430617169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:46 Heat of formation + Delta-G solvation = -94.951950 kcal Electronic energy + Delta-G solvation = -24333.610712 eV Core-core repulsion = 20761.725812 eV Total energy + Delta-G solvation = -3571.884899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.37804 -39.92243 -39.03079 -36.12057 -35.54014 -34.65859 -32.47980 -31.94197 -29.89309 -28.09879 -27.75316 -27.15138 -25.17938 -24.00624 -23.31176 -21.90388 -21.03684 -20.01486 -19.11253 -17.91968 -17.50250 -17.15212 -16.94006 -16.69385 -16.26257 -16.23318 -15.73373 -15.60314 -15.29124 -14.93713 -14.68801 -14.61277 -14.25261 -14.13179 -13.77379 -13.64599 -13.26151 -13.11398 -13.00454 -12.96837 -12.74542 -12.66819 -12.42049 -12.26747 -12.16007 -11.77543 -11.75473 -11.53964 -11.30686 -11.19433 -10.78568 -10.48877 -10.33451 -9.93095 -9.71785 -8.81699 -8.39892 -6.20165 -0.21912 0.22722 1.28962 1.37224 1.45651 1.63024 1.74888 1.99533 2.23620 2.73031 2.78150 2.93205 3.40915 3.55161 3.64470 3.87257 3.91281 3.94762 3.99238 4.20781 4.32708 4.39696 4.44155 4.45079 4.53116 4.56919 4.65887 4.68318 4.77342 4.82617 4.89481 4.93526 5.01252 5.04720 5.17767 5.21609 5.27824 5.29761 5.37735 5.39030 5.44759 5.48325 5.83069 6.15204 6.22996 6.36071 7.00457 7.05715 8.67360 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.002487 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.887607 B =11256.674487 C =11474.377690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.396 6.396 3 C 0.090 3.910 4 H 0.090 0.910 5 C 0.100 3.900 6 N -0.706 5.706 7 C 0.560 3.440 8 O -0.580 6.580 9 C -0.158 4.158 10 C -0.064 4.064 11 C -0.119 4.119 12 C -0.062 4.062 13 C -0.128 4.128 14 S -0.096 6.096 15 C -0.535 4.535 16 H 0.068 0.932 17 C 0.019 3.981 18 N -0.906 5.906 19 Si 0.993 3.007 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.269 1.269 23 C -0.043 4.043 24 C -0.097 4.097 25 C -0.152 4.152 26 C -0.140 4.140 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.410 0.590 33 H 0.168 0.832 34 H 0.177 0.823 35 H 0.135 0.865 36 H 0.274 0.726 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 -2.531 29.181 30.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.315 6.315 3 C 0.032 3.968 4 H 0.108 0.892 5 C -0.023 4.023 6 N -0.360 5.360 7 C 0.349 3.651 8 O -0.461 6.461 9 C -0.163 4.163 10 C -0.083 4.083 11 C -0.138 4.138 12 C -0.083 4.083 13 C -0.239 4.239 14 S 0.138 5.862 15 C -0.682 4.682 16 H 0.086 0.914 17 C -0.187 4.187 18 N -0.543 5.543 19 Si 0.815 3.185 20 H -0.186 1.186 21 H -0.198 1.198 22 H -0.193 1.193 23 C -0.065 4.065 24 C -0.117 4.117 25 C -0.209 4.209 26 C -0.197 4.197 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.249 0.751 33 H 0.186 0.814 34 H 0.195 0.805 35 H 0.152 0.848 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.267 -1.355 28.294 29.012 hybrid contribution 0.179 -1.667 -0.433 1.731 sum -6.087 -3.021 27.862 28.679 Atomic orbital electron populations 1.23148 0.79602 1.04229 1.00906 1.87960 1.21230 1.27449 1.94906 1.22457 0.96467 0.85760 0.92121 0.89220 1.22050 0.91679 1.02492 0.86117 1.45694 1.14634 1.68992 1.06652 1.18433 0.87167 0.76202 0.83311 1.90756 1.22038 1.49727 1.83570 1.19952 0.95643 1.07927 0.92781 1.21654 0.90215 0.95332 1.01064 1.21548 1.01600 0.99730 0.90927 1.22102 0.94311 0.93482 0.98425 1.22499 0.96970 1.05152 0.99248 1.83518 1.87494 1.14708 1.00448 1.23058 1.50456 0.91900 1.02832 0.91363 1.26024 0.94039 1.02557 0.96036 1.70111 1.42934 1.30944 1.10283 0.85030 0.78578 0.76880 0.78026 1.18586 1.19774 1.19340 1.21623 0.98492 0.94493 0.91921 1.21263 0.97172 0.98636 0.94595 1.21935 1.01346 0.95301 1.02351 1.21731 1.00727 1.01987 0.95234 0.92078 0.93415 0.88548 0.92512 0.89894 0.75111 0.81424 0.80537 0.84757 0.91696 0.87711 0.91110 0.91534 0.91157 0.92960 0.92506 0.91814 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.56 113.37 1.20 1.34 16 2 O -0.40 -5.93 9.51 -148.98 -1.42 -7.34 16 3 C 0.09 1.22 1.92 30.59 0.06 1.28 16 4 H 0.09 0.89 7.57 -2.39 -0.02 0.87 16 5 C 0.10 2.03 5.08 86.38 0.44 2.46 16 6 N -0.71 -15.68 5.43 -465.96 -2.53 -18.21 16 7 C 0.56 18.32 7.77 86.79 0.67 18.99 16 8 O -0.58 -24.28 16.33 -3.90 -0.06 -24.34 16 9 C -0.16 -5.26 5.87 -20.11 -0.12 -5.37 16 10 C -0.06 -1.49 9.54 22.57 0.22 -1.28 16 11 C -0.12 -2.87 10.02 22.21 0.22 -2.65 16 12 C -0.06 -2.18 9.79 22.48 0.22 -1.96 16 13 C -0.13 -5.68 5.45 22.65 0.12 -5.56 16 14 S -0.10 -5.31 21.41 -56.49 -1.21 -6.52 16 15 C -0.54 -31.59 9.46 67.94 0.64 -30.95 16 16 H 0.07 3.97 7.79 -2.91 -0.02 3.95 16 17 C 0.02 1.08 5.49 84.84 0.47 1.54 16 18 N -0.91 -55.07 13.22 21.64 0.29 -54.78 16 19 Si 0.99 44.89 29.55 68.60 2.03 46.92 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 C -0.04 -1.87 9.34 22.70 0.21 -1.65 16 24 C -0.10 -1.19 2.72 -10.79 -0.03 -1.22 16 25 C -0.15 -1.68 8.84 71.99 0.64 -1.04 16 26 C -0.14 -1.32 9.05 71.98 0.65 -0.67 16 27 H 0.06 0.33 8.05 -2.39 -0.02 0.31 16 28 H 0.05 0.29 6.47 -2.39 -0.02 0.27 16 29 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.75 6.28 -2.38 -0.01 1.73 16 32 H 0.41 6.32 4.50 -92.71 -0.42 5.91 16 33 H 0.17 2.10 6.40 -2.91 -0.02 2.08 16 34 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.10 5.10 7.65 -2.91 -0.02 5.08 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 0.71 6.38 -2.39 -0.02 0.69 16 42 H 0.06 0.61 7.68 -2.38 -0.02 0.59 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -78.70 377.87 3.29 -75.41 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.58 Total: 15.61 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 5.61 Total: -26.73 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -2.24 Total: -73.00 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.48 Total: -31.69 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.21 Total: -6.52 kcal Total: -78.70 3.29 -75.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430617169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.547 kcal (2) G-P(sol) polarization free energy of solvation -78.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds