Wall clock time and date at job start Tue Mar 31 2020 14:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47570 * 2 1 4 4 C 1.52995 * 109.47356 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47411 * 59.99867 * 4 3 2 6 6 O 1.42906 * 109.46894 * 299.99823 * 4 3 2 7 7 C 1.53004 * 109.47128 * 180.02562 * 4 3 2 8 8 N 1.46503 * 109.47087 * 185.00037 * 7 4 3 9 9 C 1.34772 * 119.99774 * 179.97438 * 8 7 4 10 10 O 1.21552 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.47860 * 120.00133 * 179.97438 * 9 8 7 12 12 C 1.39674 * 120.09890 * 359.72892 * 11 9 8 13 13 C 1.38040 * 120.04210 * 179.78632 * 12 11 9 14 14 C 1.38179 * 120.24068 * 0.46816 * 13 12 11 15 15 C 1.39185 * 120.20011 * 359.78664 * 14 13 12 16 16 S 1.76202 * 120.01737 * 179.97438 * 15 14 13 17 17 C 1.76203 * 99.99892 * 265.52509 * 16 15 14 18 18 H 1.08004 * 120.00108 * 5.12862 * 17 16 15 19 19 C 1.38725 * 120.00122 * 185.11676 * 17 16 15 20 20 N 1.31619 * 120.00413 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99994 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47439 * 89.99790 * 21 19 17 23 23 H 1.48500 * 109.47453 * 209.99796 * 21 19 17 24 24 H 1.48506 * 109.47057 * 329.99716 * 21 19 17 25 25 C 1.38875 * 119.95891 * 359.97438 * 15 14 13 26 26 H 1.08998 * 109.46726 * 300.00277 * 1 2 3 27 27 H 1.08995 * 109.46821 * 60.00135 * 1 2 3 28 28 H 1.08999 * 109.46688 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47497 * 239.99419 * 2 1 3 30 30 H 1.09004 * 109.47100 * 120.00379 * 2 1 3 31 31 H 1.08999 * 109.46860 * 59.99822 * 3 2 1 32 32 H 1.09005 * 109.46493 * 300.00132 * 3 2 1 33 33 H 1.08994 * 109.47385 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.47447 * 300.00303 * 5 4 3 35 35 H 1.09005 * 109.47077 * 60.00023 * 5 4 3 36 36 H 0.96696 * 113.99855 * 299.99512 * 6 4 3 37 37 H 1.09001 * 109.46647 * 304.99344 * 7 4 3 38 38 H 1.08991 * 109.47166 * 64.99211 * 7 4 3 39 39 H 0.97000 * 119.99807 * 359.97438 * 8 7 4 40 40 H 1.08011 * 119.98232 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.88133 * 180.21323 * 13 12 11 42 42 H 1.07994 * 119.90125 * 179.76520 * 14 13 12 43 43 H 0.96998 * 120.00833 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.11653 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0806 0.7209 -1.2482 6 8 4.0459 0.7689 1.1678 7 6 4.0802 2.8849 0.0013 8 7 5.5403 2.8866 -0.1185 9 6 6.2132 4.0541 -0.1398 10 8 5.6088 5.1056 -0.0592 11 6 7.6869 4.0559 -0.2601 12 6 8.3842 2.8487 -0.3461 13 6 9.7596 2.8519 -0.4628 14 6 10.4534 4.0467 -0.4855 15 6 9.7692 5.2554 -0.3952 16 16 10.6587 6.7761 -0.4238 17 6 10.8369 7.0590 1.3062 18 1 10.5028 6.3134 2.0126 19 6 11.4067 8.2392 1.7610 20 7 11.5403 8.4503 3.0533 21 14 11.9843 9.5289 0.5394 22 1 10.8719 10.4688 0.2488 23 1 13.1286 10.2796 1.1159 24 1 12.4116 8.8638 -0.7177 25 6 8.3850 5.2620 -0.2824 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8935 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9562 -0.8900 33 1 5.1706 0.7205 -1.2475 34 1 3.7173 -0.3067 -1.2483 35 1 3.7177 1.2347 -2.1385 36 1 3.7603 1.1726 1.9987 37 1 3.6460 3.4241 -0.8406 38 1 3.7913 3.3720 0.9325 39 1 6.0226 2.0475 -0.1824 40 1 7.8465 1.9122 -0.3251 41 1 10.2958 1.9171 -0.5326 42 1 11.5298 4.0427 -0.5732 43 1 11.9383 9.2757 3.3714 44 1 7.8515 6.1984 -0.2126 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431333222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:26 Heat of formation + Delta-G solvation = -82.858837 kcal Electronic energy + Delta-G solvation = -24174.958764 eV Core-core repulsion = 20603.598262 eV Total energy + Delta-G solvation = -3571.360503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26102 -39.04491 -37.74363 -34.70841 -34.48402 -32.49586 -31.74234 -30.73547 -30.50231 -27.53423 -26.62091 -25.67579 -23.55413 -22.43321 -21.81271 -20.74546 -20.34196 -18.53311 -17.48249 -16.92279 -16.15683 -16.08195 -15.57993 -15.33169 -15.25416 -14.96320 -14.70009 -14.42295 -14.27226 -13.84352 -13.49361 -13.39611 -13.01405 -12.90349 -12.79084 -12.50445 -12.24643 -12.17570 -12.15807 -11.94314 -11.63714 -11.35389 -11.19157 -11.10376 -11.09610 -10.88810 -10.62986 -10.35745 -9.93922 -9.79515 -9.23728 -9.16224 -9.07826 -8.63862 -8.15517 -7.13094 -6.32416 -4.07958 1.10964 1.59728 2.85463 3.01824 3.09124 3.27587 3.38891 3.50628 3.82944 4.07559 4.17559 4.26625 4.36445 4.40395 4.69618 4.74704 4.84797 4.90368 5.01254 5.05746 5.07717 5.15904 5.19451 5.26572 5.32881 5.40890 5.45980 5.50768 5.54662 5.64124 5.67123 5.72543 5.79434 5.90300 5.92184 5.93825 6.18923 6.31147 6.52106 6.57896 6.83296 7.11336 7.24672 7.47371 7.91673 8.26395 8.45210 9.11356 10.76979 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.002346 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.925561 B =11930.327523 C =12364.176992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.143 4.143 4 C 0.120 3.880 5 C -0.143 4.143 6 O -0.554 6.554 7 C 0.095 3.905 8 N -0.725 5.725 9 C 0.563 3.437 10 O -0.536 6.536 11 C -0.153 4.153 12 C -0.085 4.085 13 C -0.139 4.139 14 C -0.051 4.051 15 C -0.086 4.086 16 S -0.112 6.112 17 C -0.509 4.509 18 H 0.091 0.909 19 C 0.094 3.906 20 N -0.876 5.876 21 Si 0.858 3.142 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.239 1.239 25 C -0.017 4.017 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.379 0.621 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.402 0.598 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.272 0.728 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.013 -18.761 -8.031 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.181 4.181 4 C 0.079 3.921 5 C -0.200 4.200 6 O -0.361 6.361 7 C -0.029 4.029 8 N -0.379 5.379 9 C 0.351 3.649 10 O -0.413 6.413 11 C -0.157 4.157 12 C -0.104 4.104 13 C -0.159 4.159 14 C -0.072 4.072 15 C -0.197 4.197 16 S 0.122 5.878 17 C -0.656 4.656 18 H 0.109 0.891 19 C -0.114 4.114 20 N -0.512 5.512 21 Si 0.683 3.317 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.163 1.163 25 C -0.038 4.038 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.227 0.773 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.240 0.760 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.082 0.918 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.729 -17.571 -9.148 25.928 hybrid contribution -0.247 -0.059 1.249 1.274 sum -16.977 -17.630 -7.899 25.718 Atomic orbital electron populations 1.21794 0.95927 1.01642 1.01772 1.21492 0.95447 0.96050 1.02834 1.22223 0.94320 0.98287 1.03306 1.21469 0.93001 0.90283 0.87338 1.21814 1.01867 1.01268 0.95031 1.86548 1.77112 1.56760 1.15658 1.22017 0.81086 0.96799 1.03002 1.45818 1.07044 1.08950 1.76114 1.18395 0.87369 0.83394 0.75741 1.90775 1.69883 1.31301 1.49367 1.19820 0.92110 0.94713 1.09103 1.21186 0.94728 0.96207 0.98274 1.21050 0.93859 0.98152 1.02854 1.21900 1.00445 0.91244 0.93622 1.22197 0.95457 0.99436 1.02565 1.83062 1.69049 1.21806 1.13919 1.22247 1.47498 1.08141 0.87694 0.89078 1.24748 0.94299 0.97194 0.95207 1.69923 1.42395 1.26259 1.12602 0.86728 0.79636 0.82723 0.82628 1.19037 1.19800 1.16343 1.21889 0.93235 0.97515 0.91180 0.92796 0.92813 0.92735 0.91661 0.91266 0.91259 0.90653 0.91889 0.91093 0.90804 0.77333 0.90588 0.91159 0.76044 0.86357 0.85594 0.84893 0.91813 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.68 5.44 -26.73 -0.15 -0.83 16 3 C -0.14 -0.83 4.45 -26.73 -0.12 -0.95 16 4 C 0.12 0.84 0.75 -90.62 -0.07 0.78 16 5 C -0.14 -0.95 8.26 37.15 0.31 -0.64 16 6 O -0.55 -4.23 12.25 -35.23 -0.43 -4.66 16 7 C 0.10 0.91 4.82 -4.04 -0.02 0.90 16 8 N -0.72 -8.38 5.14 -61.24 -0.31 -8.70 16 9 C 0.56 9.08 7.77 -12.32 -0.10 8.99 16 10 O -0.54 -10.60 16.34 5.32 0.09 -10.52 16 11 C -0.15 -2.57 5.87 -105.00 -0.62 -3.18 16 12 C -0.08 -1.16 9.54 -39.12 -0.37 -1.54 16 13 C -0.14 -1.97 10.02 -39.68 -0.40 -2.37 16 14 C -0.05 -0.90 9.79 -39.25 -0.38 -1.28 16 15 C -0.09 -1.80 5.45 -38.99 -0.21 -2.02 16 16 S -0.11 -2.74 19.38 -107.50 -2.08 -4.82 16 17 C -0.51 -14.70 10.01 30.91 0.31 -14.39 16 18 H 0.09 2.86 8.02 -52.48 -0.42 2.44 16 19 C 0.09 2.74 5.50 -17.46 -0.10 2.64 16 20 N -0.88 -26.41 13.97 55.49 0.77 -25.64 16 21 Si 0.86 21.13 27.74 -169.99 -4.71 16.42 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 25 C -0.02 -0.33 9.34 -38.92 -0.36 -0.70 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 30 H 0.07 0.43 7.68 -51.93 -0.40 0.04 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.44 6.58 -51.93 -0.34 0.10 16 34 H 0.07 0.44 6.43 -51.93 -0.33 0.11 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.38 1.99 9.04 45.56 0.41 2.40 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.40 3.91 5.02 -40.82 -0.20 3.70 16 40 H 0.12 1.18 6.40 -52.48 -0.34 0.85 16 41 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.14 3.04 7.65 -52.49 -0.40 2.64 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -33.72 375.50 -8.67 -42.40 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.74 Total: 4.89 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.91 Total: -15.02 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.46 Total: -34.34 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.34 Total: -15.18 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.42 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.08 Total: -4.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.72 -8.67 -42.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431333222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.462 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds