Wall clock time and date at job start Tue Mar 31 2020 14:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47570 * 2 1 4 4 C 1.52995 * 109.47356 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47411 * 59.99867 * 4 3 2 6 6 O 1.42906 * 109.46894 * 299.99823 * 4 3 2 7 7 C 1.53004 * 109.47128 * 180.02562 * 4 3 2 8 8 N 1.46503 * 109.47087 * 185.00037 * 7 4 3 9 9 C 1.34772 * 119.99774 * 179.97438 * 8 7 4 10 10 O 1.21552 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.47860 * 120.00133 * 179.97438 * 9 8 7 12 12 C 1.39674 * 120.09890 * 359.72892 * 11 9 8 13 13 C 1.38040 * 120.04210 * 179.78632 * 12 11 9 14 14 C 1.38179 * 120.24068 * 0.46816 * 13 12 11 15 15 C 1.39185 * 120.20011 * 359.78664 * 14 13 12 16 16 S 1.76202 * 120.01737 * 179.97438 * 15 14 13 17 17 C 1.76203 * 99.99892 * 265.52509 * 16 15 14 18 18 H 1.08004 * 120.00108 * 5.12862 * 17 16 15 19 19 C 1.38725 * 120.00122 * 185.11676 * 17 16 15 20 20 N 1.31619 * 120.00413 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99994 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47439 * 89.99790 * 21 19 17 23 23 H 1.48500 * 109.47453 * 209.99796 * 21 19 17 24 24 H 1.48506 * 109.47057 * 329.99716 * 21 19 17 25 25 C 1.38875 * 119.95891 * 359.97438 * 15 14 13 26 26 H 1.08998 * 109.46726 * 300.00277 * 1 2 3 27 27 H 1.08995 * 109.46821 * 60.00135 * 1 2 3 28 28 H 1.08999 * 109.46688 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47497 * 239.99419 * 2 1 3 30 30 H 1.09004 * 109.47100 * 120.00379 * 2 1 3 31 31 H 1.08999 * 109.46860 * 59.99822 * 3 2 1 32 32 H 1.09005 * 109.46493 * 300.00132 * 3 2 1 33 33 H 1.08994 * 109.47385 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.47447 * 300.00303 * 5 4 3 35 35 H 1.09005 * 109.47077 * 60.00023 * 5 4 3 36 36 H 0.96696 * 113.99855 * 299.99512 * 6 4 3 37 37 H 1.09001 * 109.46647 * 304.99344 * 7 4 3 38 38 H 1.08991 * 109.47166 * 64.99211 * 7 4 3 39 39 H 0.97000 * 119.99807 * 359.97438 * 8 7 4 40 40 H 1.08011 * 119.98232 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.88133 * 180.21323 * 13 12 11 42 42 H 1.07994 * 119.90125 * 179.76520 * 14 13 12 43 43 H 0.96998 * 120.00833 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.11653 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0806 0.7209 -1.2482 6 8 4.0459 0.7689 1.1678 7 6 4.0802 2.8849 0.0013 8 7 5.5403 2.8866 -0.1185 9 6 6.2132 4.0541 -0.1398 10 8 5.6088 5.1056 -0.0592 11 6 7.6869 4.0559 -0.2601 12 6 8.3842 2.8487 -0.3461 13 6 9.7596 2.8519 -0.4628 14 6 10.4534 4.0467 -0.4855 15 6 9.7692 5.2554 -0.3952 16 16 10.6587 6.7761 -0.4238 17 6 10.8369 7.0590 1.3062 18 1 10.5028 6.3134 2.0126 19 6 11.4067 8.2392 1.7610 20 7 11.5403 8.4503 3.0533 21 14 11.9843 9.5289 0.5394 22 1 10.8719 10.4688 0.2488 23 1 13.1286 10.2796 1.1159 24 1 12.4116 8.8638 -0.7177 25 6 8.3850 5.2620 -0.2824 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8935 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9562 -0.8900 33 1 5.1706 0.7205 -1.2475 34 1 3.7173 -0.3067 -1.2483 35 1 3.7177 1.2347 -2.1385 36 1 3.7603 1.1726 1.9987 37 1 3.6460 3.4241 -0.8406 38 1 3.7913 3.3720 0.9325 39 1 6.0226 2.0475 -0.1824 40 1 7.8465 1.9122 -0.3251 41 1 10.2958 1.9171 -0.5326 42 1 11.5298 4.0427 -0.5732 43 1 11.9383 9.2757 3.3714 44 1 7.8515 6.1984 -0.2126 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431333222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:26 Heat of formation + Delta-G solvation = -106.689109 kcal Electronic energy + Delta-G solvation = -24175.992122 eV Core-core repulsion = 20603.598262 eV Total energy + Delta-G solvation = -3572.393861 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39582 -39.89335 -38.98694 -35.65682 -35.06362 -34.72785 -32.73583 -32.01396 -31.53260 -28.14363 -27.92901 -27.34388 -24.74268 -23.71105 -22.49691 -21.72153 -21.17258 -20.10676 -19.14916 -17.76205 -17.35581 -17.15169 -16.83372 -16.72633 -16.41449 -16.13055 -15.77918 -15.39334 -15.23788 -15.01835 -14.84676 -14.71333 -14.14115 -14.03824 -13.61505 -13.61109 -13.27811 -13.15149 -13.08004 -12.93458 -12.71264 -12.65954 -12.61914 -12.30335 -12.11818 -11.86294 -11.59398 -11.36267 -11.31602 -11.22775 -11.00678 -10.77484 -10.32510 -9.94157 -9.76774 -9.15450 -8.54619 -6.28994 -0.23483 0.18635 1.05439 1.30827 1.43312 1.63899 1.74459 2.02563 2.20965 2.58036 2.83312 2.95043 3.28354 3.53143 3.63482 3.82857 3.87324 3.89603 3.99156 4.21344 4.28795 4.31989 4.42638 4.54043 4.54413 4.63101 4.68488 4.82710 4.87235 4.87938 4.97332 4.99640 5.06786 5.16916 5.18387 5.27050 5.30254 5.31854 5.41735 5.44682 5.51004 5.67915 5.80481 6.09268 6.40231 6.77743 6.87560 7.08732 8.58943 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.002346 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.925561 B =11930.327523 C =12364.176992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.140 4.140 4 C 0.132 3.868 5 C -0.147 4.147 6 O -0.564 6.564 7 C 0.091 3.909 8 N -0.700 5.700 9 C 0.560 3.440 10 O -0.583 6.583 11 C -0.158 4.158 12 C -0.060 4.060 13 C -0.121 4.121 14 C -0.058 4.058 15 C -0.120 4.120 16 S -0.113 6.113 17 C -0.525 4.525 18 H 0.045 0.955 19 C 0.039 3.961 20 N -0.919 5.919 21 Si 0.923 3.077 22 H -0.263 1.263 23 H -0.257 1.257 24 H -0.226 1.226 25 C -0.042 4.042 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.388 0.612 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.415 0.585 40 H 0.169 0.831 41 H 0.178 0.822 42 H 0.141 0.859 43 H 0.278 0.722 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.385 -21.725 -9.644 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.179 4.179 4 C 0.091 3.909 5 C -0.204 4.204 6 O -0.371 6.371 7 C -0.033 4.033 8 N -0.354 5.354 9 C 0.348 3.652 10 O -0.464 6.464 11 C -0.163 4.163 12 C -0.079 4.079 13 C -0.140 4.140 14 C -0.078 4.078 15 C -0.231 4.231 16 S 0.120 5.880 17 C -0.672 4.672 18 H 0.064 0.936 19 C -0.166 4.166 20 N -0.556 5.556 21 Si 0.744 3.256 22 H -0.187 1.187 23 H -0.181 1.181 24 H -0.150 1.150 25 C -0.064 4.064 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.238 0.762 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.254 0.746 40 H 0.187 0.813 41 H 0.195 0.805 42 H 0.159 0.841 43 H 0.088 0.912 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.113 -20.597 -10.759 28.859 hybrid contribution -0.275 0.622 1.791 1.916 sum -17.387 -19.975 -8.967 27.959 Atomic orbital electron populations 1.21793 0.95630 1.01888 1.01841 1.21454 0.95673 0.95646 1.02667 1.22201 0.93319 0.98639 1.03692 1.21383 0.93619 0.88331 0.87617 1.21879 1.01889 1.01725 0.94878 1.86526 1.77367 1.56955 1.16294 1.22227 0.79591 0.98867 1.02593 1.45657 1.07956 1.07928 1.73844 1.18392 0.87201 0.83947 0.75646 1.90756 1.70580 1.33218 1.51832 1.19949 0.92750 0.94699 1.08935 1.21723 0.94887 0.96652 0.94590 1.21562 0.94022 0.98536 0.99905 1.22095 1.01143 0.91236 0.93359 1.22092 0.95617 0.98769 1.06609 1.82602 1.70160 1.25291 1.09907 1.22381 1.47199 1.07373 0.90203 0.93618 1.25750 0.94243 0.99393 0.97197 1.70028 1.43554 1.27354 1.14710 0.85755 0.79585 0.79730 0.80572 1.18719 1.18091 1.14960 1.21642 0.93211 0.97976 0.93594 0.92879 0.92621 0.92431 0.91401 0.91812 0.91019 0.90254 0.91883 0.90367 0.90169 0.76215 0.90828 0.91844 0.74553 0.81330 0.80512 0.84075 0.91250 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.12 -1.07 5.44 30.60 0.17 -0.90 16 3 C -0.14 -1.34 4.45 30.59 0.14 -1.20 16 4 C 0.13 1.54 0.75 -10.80 -0.01 1.53 16 5 C -0.15 -1.50 8.26 71.98 0.59 -0.91 16 6 O -0.56 -7.09 12.25 -148.98 -1.82 -8.92 16 7 C 0.09 1.61 4.82 86.38 0.42 2.02 16 8 N -0.70 -14.70 5.14 -465.96 -2.40 -17.09 16 9 C 0.56 17.81 7.77 86.79 0.67 18.48 16 10 O -0.58 -23.84 16.34 -3.88 -0.06 -23.91 16 11 C -0.16 -5.20 5.87 -20.11 -0.12 -5.31 16 12 C -0.06 -1.41 9.54 22.57 0.22 -1.19 16 13 C -0.12 -2.90 10.02 22.21 0.22 -2.68 16 14 C -0.06 -1.94 9.79 22.48 0.22 -1.72 16 15 C -0.12 -5.16 5.45 22.65 0.12 -5.03 16 16 S -0.11 -5.71 19.38 -56.49 -1.09 -6.80 16 17 C -0.52 -31.83 10.01 67.94 0.68 -31.15 16 18 H 0.05 3.07 8.02 -2.91 -0.02 3.05 16 19 C 0.04 2.35 5.50 84.84 0.47 2.81 16 20 N -0.92 -57.49 13.97 21.63 0.30 -57.19 16 21 Si 0.92 44.42 27.74 68.60 1.90 46.32 16 22 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.23 -10.33 6.74 99.48 0.67 -9.66 16 25 C -0.04 -1.78 9.34 22.70 0.21 -1.57 16 26 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.59 6.43 -2.38 -0.02 0.58 16 30 H 0.06 0.67 7.68 -2.38 -0.02 0.65 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.06 0.64 6.58 -2.39 -0.02 0.62 16 34 H 0.08 0.72 6.43 -2.38 -0.02 0.70 16 35 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.39 3.23 9.04 -74.06 -0.67 2.56 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.41 6.46 5.02 -92.71 -0.47 5.99 16 40 H 0.17 2.28 6.40 -2.90 -0.02 2.26 16 41 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 42 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 44 H 0.11 5.09 7.65 -2.91 -0.02 5.06 16 Total: -1.00 -79.02 375.50 1.39 -77.64 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -0.15 Total: 17.39 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 4.71 Total: -27.44 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -2.09 Total: -74.28 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -1.89 Total: -32.82 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.32 kcal Atomic # 16 Polarization: -5.71 SS G_CDS: -1.09 Total: -6.80 kcal Total: -79.02 1.39 -77.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431333222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.054 kcal (2) G-P(sol) polarization free energy of solvation -79.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds