Wall clock time and date at job start Tue Mar 31 2020 14:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46909 * 2 1 4 4 C 1.53001 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47005 * 304.99685 * 4 3 2 6 6 O 1.42895 * 109.47107 * 64.99838 * 4 3 2 7 7 C 1.53004 * 109.47224 * 185.00267 * 4 3 2 8 8 N 1.46503 * 109.47087 * 179.97438 * 7 4 3 9 9 C 1.34772 * 119.99774 * 179.97438 * 8 7 4 10 10 O 1.21552 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.47860 * 120.00133 * 179.97438 * 9 8 7 12 12 C 1.39674 * 120.09890 * 359.72892 * 11 9 8 13 13 C 1.38037 * 120.04028 * 179.74115 * 12 11 9 14 14 C 1.38177 * 120.24389 * 0.55880 * 13 12 11 15 15 C 1.39185 * 120.19819 * 359.69585 * 14 13 12 16 16 S 1.76202 * 120.01737 * 180.02562 * 15 14 13 17 17 C 1.76203 * 99.99892 * 265.52509 * 16 15 14 18 18 H 1.08004 * 120.00108 * 5.12862 * 17 16 15 19 19 C 1.38725 * 120.00122 * 185.11676 * 17 16 15 20 20 N 1.31619 * 120.00413 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99994 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47439 * 89.99790 * 21 19 17 23 23 H 1.48500 * 109.47453 * 209.99796 * 21 19 17 24 24 H 1.48506 * 109.47057 * 329.99716 * 21 19 17 25 25 C 1.38875 * 119.95891 * 0.02562 * 15 14 13 26 26 H 1.08995 * 109.47284 * 60.00699 * 1 2 3 27 27 H 1.09005 * 109.46729 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47244 * 299.99896 * 1 2 3 29 29 H 1.09000 * 109.46780 * 239.99842 * 2 1 3 30 30 H 1.08994 * 109.47106 * 120.00064 * 2 1 3 31 31 H 1.09000 * 109.47082 * 60.00005 * 3 2 1 32 32 H 1.09004 * 109.47325 * 299.99972 * 3 2 1 33 33 H 1.09004 * 109.47172 * 300.00623 * 5 4 3 34 34 H 1.08999 * 109.46659 * 59.99899 * 5 4 3 35 35 H 1.08998 * 109.47056 * 180.02562 * 5 4 3 36 36 H 0.96693 * 114.00544 * 60.00274 * 6 4 3 37 37 H 1.09001 * 109.46647 * 299.99181 * 7 4 3 38 38 H 1.08991 * 109.47166 * 59.99047 * 7 4 3 39 39 H 0.97000 * 119.99807 * 359.97438 * 8 7 4 40 40 H 1.08011 * 119.98232 * 0.02562 * 12 11 9 41 41 H 1.08006 * 119.88021 * 180.25597 * 13 12 11 42 42 H 1.07994 * 119.90317 * 179.71961 * 14 13 12 43 43 H 0.96998 * 120.00833 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.11653 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.6150 1.1807 6 8 4.0458 0.8733 -1.2219 7 6 4.0800 2.8795 0.1251 8 7 5.5450 2.8795 0.1251 9 6 6.2189 4.0423 0.2264 10 8 5.6111 5.0909 0.3182 11 6 7.6975 4.0423 0.2270 12 6 8.3980 2.8379 0.1284 13 6 9.7784 2.8398 0.1236 14 6 10.4731 4.0296 0.2278 15 6 9.7852 5.2352 0.3319 16 16 10.6760 6.7497 0.4639 17 6 10.7127 6.9314 2.2161 18 1 10.3210 6.1484 2.8486 19 6 11.2448 8.0801 2.7834 20 7 11.2727 8.2157 4.0923 21 14 11.9218 9.4346 1.6896 22 1 10.8380 10.3963 1.3642 23 1 13.0161 10.1440 2.3999 24 1 12.4495 8.8404 0.4351 25 6 8.3965 5.2435 0.3317 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.7174 1.0492 2.1123 34 1 3.7171 -0.4087 1.0911 35 1 5.1705 0.6154 1.1805 36 1 3.7602 1.3478 -2.0146 37 1 3.7164 3.4690 -0.7165 38 1 3.7170 3.3137 1.0566 39 1 6.0300 2.0426 0.0523 40 1 7.8593 1.9049 0.0511 41 1 10.3174 1.9073 0.0431 42 1 11.5530 4.0243 0.2281 43 1 11.6444 9.0190 4.4890 44 1 7.8602 6.1774 0.4119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431333223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:29 Heat of formation + Delta-G solvation = -83.245571 kcal Electronic energy + Delta-G solvation = -24175.697330 eV Core-core repulsion = 20604.320057 eV Total energy + Delta-G solvation = -3571.377273 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25611 -39.04941 -37.74236 -34.73225 -34.47693 -32.49673 -31.73883 -30.73460 -30.50192 -27.50541 -26.62104 -25.67644 -23.55146 -22.43861 -21.82460 -20.75868 -20.31494 -18.52491 -17.48485 -16.93154 -16.13219 -16.07964 -15.58293 -15.34619 -15.24488 -14.96001 -14.70846 -14.42643 -14.27387 -13.84301 -13.49157 -13.38688 -13.01717 -12.90679 -12.76621 -12.50371 -12.24198 -12.17718 -12.13563 -11.94466 -11.65551 -11.35329 -11.19039 -11.09752 -11.08004 -10.89870 -10.62872 -10.35831 -9.93963 -9.79634 -9.23726 -9.15855 -9.07859 -8.63699 -8.15409 -7.13081 -6.32535 -4.08012 1.11153 1.59917 2.85218 3.03652 3.07226 3.27571 3.38913 3.50517 3.83852 4.07726 4.16995 4.26601 4.36308 4.41526 4.69252 4.75366 4.85580 4.90416 5.01770 5.05691 5.07762 5.15914 5.19749 5.29285 5.34533 5.41261 5.45737 5.51681 5.56026 5.65291 5.67506 5.73188 5.79598 5.90835 5.92049 5.93959 6.19082 6.31129 6.52341 6.58143 6.83444 7.11515 7.22717 7.48077 7.91571 8.26654 8.45036 9.11289 10.76864 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.002350 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.863587 B =11913.333824 C =12347.909135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.143 4.143 4 C 0.120 3.880 5 C -0.144 4.144 6 O -0.555 6.555 7 C 0.095 3.905 8 N -0.724 5.724 9 C 0.563 3.437 10 O -0.536 6.536 11 C -0.153 4.153 12 C -0.085 4.085 13 C -0.139 4.139 14 C -0.051 4.051 15 C -0.086 4.086 16 S -0.112 6.112 17 C -0.509 4.509 18 H 0.091 0.909 19 C 0.094 3.906 20 N -0.876 5.876 21 Si 0.858 3.142 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.239 1.239 25 C -0.017 4.017 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.378 0.622 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.403 0.597 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.272 0.728 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.336 -18.218 -9.811 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.181 4.181 4 C 0.080 3.920 5 C -0.201 4.201 6 O -0.361 6.361 7 C -0.029 4.029 8 N -0.379 5.379 9 C 0.351 3.649 10 O -0.413 6.413 11 C -0.157 4.157 12 C -0.104 4.104 13 C -0.159 4.159 14 C -0.072 4.072 15 C -0.197 4.197 16 S 0.122 5.878 17 C -0.656 4.656 18 H 0.109 0.891 19 C -0.114 4.114 20 N -0.512 5.512 21 Si 0.683 3.317 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.163 1.163 25 C -0.038 4.038 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.240 0.760 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.082 0.918 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.997 -17.029 -9.963 25.400 hybrid contribution -0.320 -0.068 0.401 0.517 sum -16.317 -17.097 -9.562 25.495 Atomic orbital electron populations 1.21795 0.95924 1.01647 1.01774 1.21517 0.95493 0.96095 1.02812 1.22221 0.94314 0.98277 1.03278 1.21479 0.92997 0.91326 0.86244 1.21840 1.01980 1.00539 0.95729 1.86542 1.77099 1.57119 1.15321 1.22014 0.80965 0.96777 1.03187 1.45777 1.06558 1.09448 1.76083 1.18393 0.87460 0.83344 0.75693 1.90775 1.69950 1.31356 1.49261 1.19819 0.91983 0.94804 1.09143 1.21189 0.94681 0.96223 0.98281 1.21051 0.93818 0.98184 1.02871 1.21900 1.00558 0.91224 0.93529 1.22196 0.95464 0.99494 1.02507 1.83064 1.69030 1.22834 1.12912 1.22246 1.47625 1.08573 0.87132 0.89083 1.24747 0.94421 0.97401 0.94876 1.69921 1.43572 1.28294 1.09403 0.86728 0.79981 0.82956 0.82061 1.19031 1.19800 1.16337 1.21888 0.93245 0.97524 0.91165 0.92833 0.92735 0.92770 0.91331 0.91537 0.90622 0.91290 0.90769 0.91046 0.91839 0.77439 0.91232 0.90534 0.76014 0.86324 0.85597 0.84896 0.91812 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.69 5.34 -26.73 -0.14 -0.83 16 3 C -0.14 -0.83 4.48 -26.73 -0.12 -0.95 16 4 C 0.12 0.85 0.74 -90.62 -0.07 0.78 16 5 C -0.14 -1.01 8.18 37.16 0.30 -0.71 16 6 O -0.55 -4.01 12.26 -35.23 -0.43 -4.44 16 7 C 0.10 0.91 4.78 -4.04 -0.02 0.89 16 8 N -0.72 -8.36 5.10 -61.24 -0.31 -8.67 16 9 C 0.56 9.07 7.77 -12.32 -0.10 8.98 16 10 O -0.54 -10.60 16.34 5.32 0.09 -10.51 16 11 C -0.15 -2.57 5.87 -105.00 -0.62 -3.18 16 12 C -0.08 -1.16 9.54 -39.12 -0.37 -1.54 16 13 C -0.14 -1.98 10.02 -39.68 -0.40 -2.37 16 14 C -0.05 -0.90 9.79 -39.25 -0.38 -1.28 16 15 C -0.09 -1.81 5.45 -38.99 -0.21 -2.02 16 16 S -0.11 -2.74 19.38 -107.50 -2.08 -4.82 16 17 C -0.51 -14.68 10.01 30.91 0.31 -14.38 16 18 H 0.09 2.85 8.02 -52.48 -0.42 2.43 16 19 C 0.09 2.74 5.50 -17.46 -0.10 2.64 16 20 N -0.88 -26.40 13.97 55.49 0.77 -25.62 16 21 Si 0.86 21.13 27.74 -169.99 -4.71 16.41 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 25 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.43 7.82 -51.93 -0.41 0.02 16 30 H 0.07 0.38 6.35 -51.93 -0.33 0.05 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.46 6.35 -51.93 -0.33 0.13 16 35 H 0.06 0.48 6.86 -51.93 -0.36 0.12 16 36 H 0.38 1.77 9.05 45.56 0.41 2.18 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.40 3.92 5.22 -40.82 -0.21 3.70 16 40 H 0.12 1.19 6.40 -52.48 -0.34 0.85 16 41 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.14 3.04 7.65 -52.49 -0.40 2.64 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -33.63 375.73 -8.69 -42.32 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.76 Total: 4.78 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.91 Total: -15.10 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.46 Total: -34.29 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.34 Total: -14.96 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.41 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.08 Total: -4.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.63 -8.69 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431333223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.924 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds