Wall clock time and date at job start Tue Mar 31 2020 14:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47309 * 2 1 4 4 C 1.53001 * 109.46926 * 239.99925 * 2 1 3 5 5 C 1.52998 * 109.46773 * 120.00208 * 2 1 3 6 6 H 1.08998 * 109.47722 * 305.75896 * 5 2 1 7 7 C 1.53004 * 109.47003 * 185.76067 * 5 2 1 8 8 O 1.42902 * 109.47170 * 301.94905 * 7 5 2 9 9 N 1.46502 * 109.47284 * 65.76445 * 5 2 1 10 10 C 1.34773 * 120.00059 * 204.99836 * 9 5 2 11 11 O 1.21552 * 120.00053 * 359.97438 * 10 9 5 12 12 C 1.47861 * 120.00144 * 180.27575 * 10 9 5 13 13 C 1.39672 * 120.09974 * 359.44547 * 12 10 9 14 14 C 1.38041 * 120.03718 * 179.75023 * 13 12 10 15 15 C 1.38177 * 120.24262 * 0.55179 * 14 13 12 16 16 C 1.39175 * 120.20511 * 359.70088 * 15 14 13 17 17 S 1.76203 * 120.02380 * 179.97438 * 16 15 14 18 18 C 1.76197 * 99.99966 * 267.36479 * 17 16 15 19 19 H 1.07996 * 120.00093 * 5.23811 * 18 17 16 20 20 C 1.38731 * 119.99642 * 185.24003 * 18 17 16 21 21 N 1.31625 * 120.00055 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00099 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47182 * 90.00507 * 22 20 18 24 24 H 1.48501 * 109.47203 * 210.00006 * 22 20 18 25 25 H 1.48501 * 109.47342 * 330.00019 * 22 20 18 26 26 C 1.38876 * 119.95845 * 0.02562 * 16 15 14 27 27 H 1.08999 * 109.47338 * 299.99887 * 1 2 3 28 28 H 1.09004 * 109.47044 * 59.99815 * 1 2 3 29 29 H 1.09001 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47210 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47577 * 300.00395 * 3 2 1 32 32 H 1.09008 * 109.46927 * 59.99963 * 3 2 1 33 33 H 1.09000 * 109.47566 * 289.38430 * 4 2 1 34 34 H 1.09000 * 109.47045 * 49.38830 * 4 2 1 35 35 H 1.08998 * 109.46730 * 169.38654 * 4 2 1 36 36 H 1.09006 * 109.46797 * 61.94606 * 7 5 2 37 37 H 1.08993 * 109.47077 * 181.94639 * 7 5 2 38 38 H 0.96698 * 114.00162 * 179.97438 * 8 7 5 39 39 H 0.97000 * 119.99874 * 24.99825 * 9 5 2 40 40 H 1.08005 * 119.98060 * 0.02562 * 13 12 10 41 41 H 1.08004 * 119.87793 * 180.25628 * 14 13 12 42 42 H 1.08003 * 119.89528 * 179.72745 * 15 14 13 43 43 H 0.96994 * 120.00029 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.12399 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 1.5948 -0.2706 2.1363 7 6 3.5631 -0.5972 1.3238 8 8 4.1444 -1.1475 0.1400 9 7 1.6681 -2.1368 1.1818 10 6 1.5419 -2.8550 2.3152 11 8 1.7370 -2.3286 3.3933 12 6 1.1726 -4.2852 2.2469 13 6 0.9428 -4.8909 1.0096 14 6 0.6031 -6.2274 0.9470 15 6 0.4778 -6.9687 2.1064 16 6 0.6994 -6.3740 3.3450 17 16 0.5376 -7.3236 4.8205 18 6 -1.1480 -6.9938 5.2133 19 1 -1.7589 -6.4200 4.5322 20 6 -1.6904 -7.4712 6.3976 21 7 -2.9498 -7.2253 6.6909 22 14 -0.6339 -8.4642 7.5753 23 1 0.0289 -7.5483 8.5381 24 1 -1.4887 -9.4265 8.3159 25 1 0.3980 -9.2072 6.8083 26 6 1.0470 -5.0314 3.4175 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.8395 -1.7889 -1.1597 34 1 1.5303 -0.3284 -2.1291 35 1 3.1133 -0.5603 -1.3489 36 1 3.8381 0.4542 1.4087 37 1 3.9296 -1.1402 2.1948 38 1 5.1100 -1.1023 0.1184 39 1 1.5128 -2.5570 0.3215 40 1 1.0352 -4.3144 0.1009 41 1 0.4300 -6.6943 -0.0114 42 1 0.2075 -8.0129 2.0511 43 1 -3.3291 -7.5594 7.5187 44 1 1.2200 -4.5674 4.3772 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444751594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:54 Heat of formation + Delta-G solvation = -70.044006 kcal Electronic energy + Delta-G solvation = -25055.220147 eV Core-core repulsion = 21484.415338 eV Total energy + Delta-G solvation = -3570.804810 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47865 -38.84838 -37.53112 -36.00842 -33.70608 -32.49062 -31.05620 -30.59495 -28.99061 -27.44674 -27.26785 -25.67103 -24.12294 -22.85232 -22.17659 -20.35873 -19.32613 -18.23300 -17.66933 -17.32964 -16.44667 -15.98016 -15.39840 -15.19882 -15.00406 -14.81942 -14.49861 -14.27549 -13.87350 -13.70529 -13.44063 -13.41562 -12.94428 -12.84407 -12.76113 -12.39351 -12.35364 -12.02243 -11.91856 -11.82574 -11.34475 -11.18068 -11.09545 -11.04931 -10.87438 -10.77805 -10.61430 -10.07088 -9.92019 -9.74278 -9.19800 -9.08508 -9.07595 -8.61945 -8.13890 -7.12614 -6.32107 -4.07492 1.13129 1.61108 2.86564 3.06486 3.14113 3.27879 3.39293 3.51395 4.00578 4.11260 4.27110 4.31099 4.56417 4.67988 4.82732 4.91242 5.01857 5.05922 5.06722 5.07878 5.16596 5.21348 5.37620 5.39535 5.50818 5.52522 5.57727 5.67783 5.71710 5.73815 5.80688 5.90767 5.92334 5.98070 6.09604 6.20429 6.29997 6.46127 6.54499 6.59582 6.84775 7.12986 7.35034 7.54544 7.92120 8.31151 8.45538 9.11825 10.77379 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021494 B = 0.002853 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.384768 B = 9810.752054 C =10011.623665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.142 4.142 5 C 0.158 3.842 6 H 0.100 0.900 7 C 0.060 3.940 8 O -0.558 6.558 9 N -0.716 5.716 10 C 0.564 3.436 11 O -0.539 6.539 12 C -0.152 4.152 13 C -0.084 4.084 14 C -0.140 4.140 15 C -0.051 4.051 16 C -0.085 4.085 17 S -0.113 6.113 18 C -0.509 4.509 19 H 0.091 0.909 20 C 0.095 3.905 21 N -0.876 5.876 22 Si 0.858 3.142 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.239 1.239 26 C -0.017 4.017 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.370 0.630 39 H 0.401 0.599 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.272 0.728 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.184 13.570 -17.450 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.199 4.199 5 C 0.053 3.947 6 H 0.118 0.882 7 C -0.018 4.018 8 O -0.364 6.364 9 N -0.370 5.370 10 C 0.352 3.648 11 O -0.417 6.417 12 C -0.157 4.157 13 C -0.103 4.103 14 C -0.159 4.159 15 C -0.072 4.072 16 C -0.196 4.196 17 S 0.121 5.879 18 C -0.655 4.655 19 H 0.109 0.891 20 C -0.114 4.114 21 N -0.512 5.512 22 Si 0.683 3.317 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.163 1.163 26 C -0.038 4.038 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.217 0.783 39 H 0.239 0.761 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.082 0.918 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.278 13.139 -16.074 24.119 hybrid contribution -0.285 0.296 -0.231 0.471 sum 11.993 13.435 -16.305 24.293 Atomic orbital electron populations 1.21922 0.94173 1.02274 1.01876 1.20738 0.95773 0.95738 0.94937 1.21909 1.01275 0.94637 1.01995 1.22049 1.03336 0.99166 0.95316 1.21068 0.92533 0.81896 0.99213 0.88247 1.22686 0.94003 0.97403 0.87738 1.86614 1.24488 1.84841 1.40410 1.45961 1.71326 1.10613 1.09146 1.18398 0.76220 0.86358 0.83793 1.90760 1.50497 1.71941 1.28472 1.19841 1.08002 0.93195 0.94651 1.21176 0.97978 0.95260 0.95909 1.21047 1.02406 0.94039 0.98446 1.21899 0.93729 1.00270 0.91334 1.22182 1.01973 0.96386 0.99064 1.83060 1.19253 1.60369 1.25268 1.22244 0.92132 1.41368 1.09795 0.89107 1.24744 0.94858 0.95064 0.96728 1.69926 1.12484 1.43990 1.24842 0.86731 0.81429 0.81158 0.82422 1.19035 1.19814 1.16335 1.21886 0.91576 0.92470 0.97915 0.92527 0.92405 0.92383 0.92074 0.92254 0.92571 0.93345 0.93485 0.89345 0.92620 0.93017 0.78287 0.76103 0.86451 0.85638 0.84921 0.91818 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.34 37.16 0.31 -0.95 16 2 C -0.07 -0.59 0.62 -154.51 -0.10 -0.68 16 3 C -0.14 -0.96 7.94 37.16 0.30 -0.67 16 4 C -0.14 -1.11 7.46 37.16 0.28 -0.84 16 5 C 0.16 1.65 1.78 -67.93 -0.12 1.53 16 6 H 0.10 1.20 7.58 -51.93 -0.39 0.81 16 7 C 0.06 0.55 6.25 37.16 0.23 0.78 16 8 O -0.56 -4.36 9.86 -35.23 -0.35 -4.71 16 9 N -0.72 -8.62 4.32 -54.74 -0.24 -8.86 16 10 C 0.56 9.15 7.74 -12.32 -0.10 9.05 16 11 O -0.54 -10.52 16.01 5.32 0.09 -10.43 16 12 C -0.15 -2.58 5.87 -105.00 -0.62 -3.20 16 13 C -0.08 -1.18 9.54 -39.12 -0.37 -1.55 16 14 C -0.14 -2.00 10.02 -39.68 -0.40 -2.40 16 15 C -0.05 -0.91 9.79 -39.26 -0.38 -1.30 16 16 C -0.09 -1.80 5.45 -39.00 -0.21 -2.01 16 17 S -0.11 -2.77 19.38 -107.50 -2.08 -4.86 16 18 C -0.51 -14.70 10.01 30.91 0.31 -14.39 16 19 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 20 C 0.09 2.75 5.50 -17.46 -0.10 2.66 16 21 N -0.88 -26.47 13.97 55.49 0.78 -25.69 16 22 Si 0.86 21.16 27.73 -169.99 -4.71 16.45 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.24 -5.71 6.74 56.52 0.38 -5.33 16 26 C -0.02 -0.34 9.34 -38.92 -0.36 -0.71 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.55 7.78 -51.93 -0.40 0.15 16 30 H 0.06 0.39 6.38 -51.93 -0.33 0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.05 0.40 5.90 -51.93 -0.31 0.09 16 34 H 0.05 0.34 8.11 -51.93 -0.42 -0.08 16 35 H 0.09 0.71 5.59 -51.93 -0.29 0.42 16 36 H 0.06 0.40 6.45 -51.93 -0.34 0.07 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.37 1.56 9.12 45.56 0.42 1.98 16 39 H 0.40 4.15 4.43 -40.82 -0.18 3.97 16 40 H 0.12 1.22 6.40 -52.48 -0.34 0.88 16 41 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.14 3.03 7.65 -52.49 -0.40 2.63 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -33.37 366.39 -7.85 -41.22 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.52 Total: 6.03 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.33 Total: -14.67 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.54 Total: -34.55 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.26 Total: -15.14 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.45 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.08 Total: -4.86 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.37 -7.85 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444751594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.826 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds