Wall clock time and date at job start Tue Mar 31 2020 14:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32574 * 1 3 3 C 1.47806 * 119.99974 * 2 1 4 4 C 1.39536 * 120.14335 * 359.72664 * 3 2 1 5 5 C 1.37976 * 119.85783 * 179.71797 * 4 3 2 6 6 C 1.38351 * 120.13926 * 0.58122 * 5 4 3 7 7 S 1.76192 * 119.85705 * 179.69713 * 6 5 4 8 8 O 1.42103 * 106.40327 * 23.51358 * 7 6 5 9 9 O 1.42102 * 106.40431 * 156.43326 * 7 6 5 10 10 N 1.65601 * 107.21908 * 269.97572 * 7 6 5 11 11 C 1.46501 * 120.00073 * 64.99697 * 10 7 6 12 12 C 1.53005 * 109.46972 * 165.00215 * 11 10 7 13 13 C 1.52995 * 109.47032 * 299.99906 * 12 11 10 14 14 C 1.53001 * 109.47071 * 60.00171 * 12 11 10 15 15 C 1.53004 * 109.46702 * 180.02562 * 12 11 10 16 16 C 1.50696 * 109.46758 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00108 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00129 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99669 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00184 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47128 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46772 * 120.00183 * 20 18 16 23 23 H 1.48494 * 109.47166 * 240.00131 * 20 18 16 24 24 C 1.38345 * 120.28482 * 359.66740 * 6 5 4 25 25 C 1.37971 * 120.14418 * 0.05403 * 24 6 5 26 26 H 1.08000 * 119.99448 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00021 * 179.72207 * 1 2 3 28 28 H 1.08000 * 119.99448 * 179.97438 * 2 1 3 29 29 H 1.07995 * 120.06993 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.93070 * 180.27391 * 5 4 3 31 31 H 0.97006 * 119.99995 * 245.00113 * 10 7 6 32 32 H 1.09005 * 109.47173 * 285.00539 * 11 10 7 33 33 H 1.09002 * 109.46733 * 45.00165 * 11 10 7 34 34 H 1.09006 * 109.47039 * 60.00380 * 13 12 11 35 35 H 1.09002 * 109.46932 * 179.97438 * 13 12 11 36 36 H 1.08997 * 109.47354 * 300.00010 * 13 12 11 37 37 H 1.09005 * 109.46998 * 59.99723 * 14 12 11 38 38 H 1.08998 * 109.47062 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.47075 * 300.00057 * 14 12 11 40 40 H 1.09000 * 109.46846 * 299.99851 * 15 12 11 41 41 H 1.09002 * 109.46977 * 59.99966 * 15 12 11 42 42 H 0.96992 * 119.99737 * 180.02562 * 19 18 16 43 43 H 1.07998 * 119.92651 * 180.02562 * 24 6 5 44 44 H 1.07999 * 120.07370 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2800 0.0000 4 6 1.3701 2.4902 -0.0058 5 6 2.0659 3.6817 0.0002 6 6 3.4494 3.6782 -0.0003 7 16 4.3304 5.2040 -0.0008 8 8 3.4487 6.1766 0.5433 9 8 5.6133 4.9269 0.5437 10 7 4.5755 5.6281 -1.5828 11 6 3.4320 5.9469 -2.4413 12 6 3.9250 6.6536 -3.7057 13 6 4.6482 7.9452 -3.3189 14 6 4.8889 5.7356 -4.4601 15 6 2.7307 6.9872 -4.6020 16 6 3.2163 7.6826 -5.8475 17 1 4.2711 7.8685 -5.9858 18 6 2.3139 8.0816 -6.8106 19 7 1.0293 7.8557 -6.6419 20 14 2.9158 8.9443 -8.3543 21 1 4.3938 9.0779 -8.3024 22 1 2.5327 8.1478 -9.5477 23 1 2.2992 10.2925 -8.4402 24 6 4.1441 2.4818 0.0001 25 6 3.4602 1.2835 0.0000 26 1 -0.5399 0.9354 -0.0004 27 1 -0.5400 -0.9353 -0.0045 28 1 1.8657 -0.9354 0.0004 29 1 0.2902 2.4942 -0.0106 30 1 1.5294 4.6190 0.0002 31 1 5.4762 5.6653 -1.9410 32 1 2.9167 5.0267 -2.7168 33 1 2.7454 6.6009 -1.9037 34 1 5.4991 7.7079 -2.6801 35 1 4.9998 8.4484 -4.2196 36 1 3.9616 8.5992 -2.7815 37 1 4.3736 4.8154 -4.7356 38 1 5.2397 6.2389 -5.3610 39 1 5.7396 5.4983 -3.8213 40 1 2.2151 6.0672 -4.8774 41 1 2.0444 7.6413 -4.0642 42 1 0.3946 8.1361 -7.3196 43 1 5.2240 2.4858 0.0002 44 1 4.0036 0.3502 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451565206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:08 Heat of formation + Delta-G solvation = -67.305937 kcal Electronic energy + Delta-G solvation = -25174.389392 eV Core-core repulsion = 21603.703314 eV Total energy + Delta-G solvation = -3570.686078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.31159 -39.20014 -38.31551 -36.98436 -35.34003 -35.20445 -33.64437 -32.15991 -30.61373 -28.94943 -27.90283 -27.25835 -24.92549 -24.64329 -23.79012 -21.06218 -20.46477 -19.90003 -19.13258 -18.35293 -18.31175 -17.30094 -16.96002 -16.48332 -16.16361 -15.81561 -15.66643 -15.48941 -14.94694 -14.68555 -14.46082 -14.31241 -14.23943 -13.97257 -13.89388 -13.66361 -13.27603 -13.22660 -13.14685 -12.91803 -12.64446 -12.61098 -12.49058 -12.27727 -12.17025 -11.99030 -11.91886 -11.83855 -11.63617 -11.48799 -10.93373 -10.81676 -10.48111 -10.40064 -10.09504 -9.51084 -8.11476 -6.17425 -0.71061 -0.44638 0.29420 1.34549 1.41997 1.44200 1.54906 2.03684 2.46272 2.58465 2.81778 3.23474 3.28694 3.68442 3.72156 3.88312 3.94838 4.15355 4.23498 4.25882 4.30336 4.38735 4.51887 4.67007 4.77040 4.80880 4.81335 4.92357 4.94247 5.03188 5.05389 5.10098 5.18446 5.23329 5.23830 5.51374 5.55505 5.56298 5.58231 5.62075 5.73024 5.84020 5.86723 5.94786 6.10036 6.37014 6.97557 7.49668 9.00870 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.003375 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.840482 B = 8294.077215 C = 9575.796526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.150 4.150 3 C -0.007 4.007 4 C -0.150 4.150 5 C -0.033 4.033 6 C -0.688 4.688 7 S 2.712 3.288 8 O -0.989 6.989 9 O -0.982 6.982 10 N -1.102 6.102 11 C 0.132 3.868 12 C -0.062 4.062 13 C -0.128 4.128 14 C -0.124 4.124 15 C 0.038 3.962 16 C -0.512 4.512 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.953 3.047 21 H -0.261 1.261 22 H -0.284 1.284 23 H -0.286 1.286 24 C -0.026 4.026 25 C -0.138 4.138 26 H 0.105 0.895 27 H 0.130 0.870 28 H 0.142 0.858 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.425 0.575 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.067 0.933 40 H -0.005 1.005 41 H -0.010 1.010 42 H 0.259 0.741 43 H 0.153 0.847 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.858 -16.381 13.843 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C -0.007 4.007 4 C -0.169 4.169 5 C -0.052 4.052 6 C -0.777 4.777 7 S 2.804 3.196 8 O -0.979 6.979 9 O -0.973 6.973 10 N -0.865 5.865 11 C 0.006 3.994 12 C -0.064 4.064 13 C -0.185 4.185 14 C -0.182 4.182 15 C 0.001 3.999 16 C -0.550 4.550 17 H 0.086 0.914 18 C -0.199 4.199 19 N -0.577 5.577 20 Si 0.779 3.221 21 H -0.185 1.185 22 H -0.210 1.210 23 H -0.212 1.212 24 C -0.046 4.046 25 C -0.156 4.156 26 H 0.123 0.877 27 H 0.148 0.852 28 H 0.160 0.840 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.263 0.737 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.013 0.987 41 H 0.009 0.991 42 H 0.068 0.932 43 H 0.171 0.829 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.809 -15.871 14.572 21.881 hybrid contribution -0.315 0.217 -1.451 1.501 sum 3.494 -15.655 13.121 20.723 Atomic orbital electron populations 1.24819 0.95564 1.03857 0.94327 1.22026 0.95840 0.95344 1.03569 1.19809 0.94068 0.94144 0.92713 1.21699 1.01484 0.91573 1.02119 1.21059 0.92195 1.00073 0.91861 1.30731 1.06531 1.19923 1.20518 1.01022 0.72636 0.73732 0.72216 1.93545 1.67953 1.59108 1.77319 1.93538 1.40532 1.86176 1.77038 1.55256 1.16042 1.84970 1.30239 1.21346 0.86890 0.99651 0.91488 1.20657 0.96977 0.95530 0.93189 1.21738 0.99479 0.96558 1.00714 1.21714 0.98170 0.98362 0.99930 1.19009 0.92534 0.94855 0.93545 1.21642 0.93688 1.36213 1.03499 0.91411 1.25855 0.95072 0.97289 1.01688 1.70101 1.02390 1.49209 1.35990 0.85575 0.78922 0.77987 0.79624 1.18502 1.20965 1.21185 1.21119 1.01021 0.91002 0.91413 1.21719 0.93573 0.99059 1.01297 0.87695 0.85214 0.84001 0.83093 0.84165 0.73684 0.91309 0.91346 0.91734 0.92934 0.94293 0.93551 0.93047 0.91404 0.98653 0.99139 0.93229 0.82897 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 14.15 66.67 0.94 -0.67 16 2 C -0.15 -1.95 9.91 23.65 0.23 -1.72 16 3 C -0.01 -0.13 5.87 -20.12 -0.12 -0.25 16 4 C -0.15 -3.06 9.40 22.52 0.21 -2.85 16 5 C -0.03 -0.78 9.50 22.23 0.21 -0.57 16 6 C -0.69 -16.82 5.95 22.32 0.13 -16.69 16 7 S 2.71 73.92 5.73 -56.49 -0.32 73.60 16 8 O -0.99 -33.18 16.74 -128.00 -2.14 -35.32 16 9 O -0.98 -29.35 17.27 -128.00 -2.21 -31.56 16 10 N -1.10 -28.69 5.33 -187.47 -1.00 -29.69 16 11 C 0.13 4.16 5.11 86.38 0.44 4.60 16 12 C -0.06 -2.27 0.55 -52.18 -0.03 -2.30 16 13 C -0.13 -4.49 8.05 71.98 0.58 -3.91 16 14 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 15 C 0.04 1.87 4.04 29.85 0.12 1.99 16 16 C -0.51 -27.06 7.65 25.60 0.20 -26.87 16 17 H 0.07 3.42 5.68 -2.91 -0.02 3.40 16 18 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 19 N -0.94 -55.52 13.29 21.45 0.28 -55.23 16 20 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 24 C -0.03 -0.55 9.50 22.23 0.21 -0.34 16 25 C -0.14 -2.44 9.79 22.52 0.22 -2.22 16 26 H 0.10 1.12 6.04 -2.91 -0.02 1.11 16 27 H 0.13 0.85 8.06 -2.91 -0.02 0.82 16 28 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 29 H 0.15 2.39 6.17 -2.91 -0.02 2.37 16 30 H 0.14 3.30 7.60 -2.91 -0.02 3.28 16 31 H 0.42 9.51 6.47 -96.74 -0.63 8.89 16 32 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.07 2.27 7.75 -2.39 -0.02 2.25 16 34 H 0.06 1.84 7.20 -2.38 -0.02 1.83 16 35 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.05 1.84 6.62 -2.39 -0.02 1.83 16 39 H 0.07 1.71 6.60 -2.39 -0.02 1.70 16 40 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.15 2.69 7.60 -2.91 -0.02 2.67 16 44 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -70.93 369.74 1.41 -69.52 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.38 Total: 18.22 kcal Atomic # 6 Polarization: -59.33 SS G_CDS: 4.40 Total: -54.94 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -0.71 Total: -84.92 kcal Atomic # 8 Polarization: -62.53 SS G_CDS: -4.35 Total: -66.88 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 73.92 SS G_CDS: -0.32 Total: 73.60 kcal Total: -70.93 1.41 -69.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451565206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.214 kcal (2) G-P(sol) polarization free energy of solvation -70.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds