Wall clock time and date at job start Tue Mar 31 2020 14:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 C 1.53001 * 109.47211 * 181.67006 * 3 2 1 5 5 H 1.09003 * 109.47155 * 305.26500 * 4 3 2 6 6 C 1.52996 * 109.47079 * 185.26439 * 4 3 2 7 7 N 1.46502 * 109.46954 * 179.97438 * 6 4 3 8 8 C 1.34776 * 119.99963 * 179.97438 * 7 6 4 9 9 O 1.21550 * 120.00301 * 0.02562 * 8 7 6 10 10 C 1.47867 * 119.99862 * 180.02562 * 8 7 6 11 11 C 1.39670 * 120.10073 * 0.02562 * 10 8 7 12 12 C 1.38043 * 120.04025 * 179.97438 * 11 10 8 13 13 C 1.38179 * 120.23943 * 0.02562 * 12 11 10 14 14 C 1.39177 * 120.20348 * 0.04241 * 13 12 11 15 15 S 1.76206 * 120.02080 * 180.02562 * 14 13 12 16 16 C 1.76195 * 99.99861 * 269.01387 * 15 14 13 17 17 H 1.07998 * 120.00243 * 3.46485 * 16 15 14 18 18 C 1.38734 * 119.99713 * 183.46290 * 16 15 14 19 19 N 1.31625 * 119.99883 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00261 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47058 * 90.00025 * 20 18 16 22 22 H 1.48498 * 109.47474 * 210.00386 * 20 18 16 23 23 H 1.48502 * 109.46977 * 330.00085 * 20 18 16 24 24 C 1.38873 * 119.96133 * 359.93184 * 14 13 12 25 25 O 1.42902 * 109.47031 * 65.26393 * 4 3 2 26 26 C 1.42900 * 113.99882 * 241.36010 * 25 4 3 27 27 H 1.09004 * 109.47047 * 60.00228 * 1 2 3 28 28 H 1.08997 * 109.47264 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47374 * 300.00194 * 1 2 3 30 30 H 1.09003 * 109.47156 * 240.00014 * 2 1 3 31 31 H 1.08997 * 109.47128 * 120.00113 * 2 1 3 32 32 H 1.08998 * 109.46907 * 61.66975 * 3 2 1 33 33 H 1.09003 * 109.47321 * 301.66847 * 3 2 1 34 34 H 1.08997 * 109.47024 * 60.00620 * 6 4 3 35 35 H 1.08992 * 109.47572 * 299.99829 * 6 4 3 36 36 H 0.97002 * 120.00032 * 0.02562 * 7 6 4 37 37 H 1.08005 * 119.98308 * 359.97438 * 11 10 8 38 38 H 1.07995 * 119.88083 * 180.02562 * 12 11 10 39 39 H 1.08002 * 119.89728 * 179.97438 * 13 12 11 40 40 H 0.97005 * 120.00283 * 180.02562 * 19 18 16 41 41 H 1.07997 * 120.12045 * 180.31796 * 24 14 13 42 42 H 1.08994 * 109.47663 * 58.87631 * 26 25 4 43 43 H 1.09004 * 109.47207 * 178.87931 * 26 25 4 44 44 H 1.09008 * 109.46859 * 298.87339 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5694 1.4427 -0.0420 5 1 3.9557 0.8413 0.7810 6 6 4.0830 2.8778 0.0902 7 7 5.5475 2.8780 0.0506 8 6 6.2242 4.0393 0.1500 9 8 5.6195 5.0865 0.2730 10 6 7.7023 4.0395 0.1094 11 6 8.3993 2.8375 -0.0324 12 6 9.7792 2.8392 -0.0707 13 6 10.4767 4.0276 0.0314 14 6 9.7924 5.2310 0.1745 15 16 10.6868 6.7437 0.3036 16 6 10.8662 6.8447 2.0535 17 1 10.5055 6.0427 2.6805 18 6 11.4708 7.9544 2.6259 19 7 11.6053 8.0295 3.9331 20 14 12.0954 9.3411 1.5415 21 1 11.0150 10.3407 1.3449 22 1 13.2601 9.9927 2.1927 23 1 12.5077 8.7924 0.2246 24 6 8.4043 5.2391 0.2134 25 8 4.0119 0.8910 -1.2838 26 6 4.7999 -0.2931 -1.1457 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.7013 1.9475 0.9046 33 1 1.6525 1.9649 -0.8747 34 1 3.7456 3.2986 1.0374 35 1 3.6969 3.4792 -0.7327 36 1 6.0301 2.0423 -0.0480 37 1 7.8584 1.9061 -0.1122 38 1 10.3155 1.9083 -0.1809 39 1 11.5563 4.0224 0.0012 40 1 12.0278 8.8056 4.3334 41 1 7.8705 6.1720 0.3192 42 1 4.2214 -1.0559 -0.6246 43 1 5.0796 -0.6607 -2.1331 44 1 5.6999 -0.0660 -0.5742 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452299407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:49 Heat of formation + Delta-G solvation = -76.861792 kcal Electronic energy + Delta-G solvation = -24020.598001 eV Core-core repulsion = 20449.497550 eV Total energy + Delta-G solvation = -3571.100451 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14459 -38.98227 -37.79128 -35.11870 -34.62597 -32.49421 -31.57102 -30.67657 -30.20183 -26.89889 -26.49829 -25.67513 -23.56825 -22.52427 -21.87772 -21.57691 -20.35269 -18.45722 -17.43190 -17.35154 -16.36633 -15.97674 -15.64873 -15.32715 -15.13431 -15.03191 -14.94868 -14.61267 -14.34668 -13.85004 -13.52695 -13.40528 -13.34186 -13.19668 -12.91162 -12.61316 -12.31800 -12.13878 -11.94217 -11.78394 -11.46024 -11.35782 -11.23516 -11.19784 -11.09360 -11.00660 -10.63856 -10.09537 -9.92521 -9.75245 -9.24018 -9.16000 -9.07785 -8.64958 -8.15724 -7.13764 -6.32507 -4.07931 1.09988 1.58077 2.84798 3.04382 3.07774 3.27774 3.31617 3.39203 3.50426 4.06802 4.25920 4.26695 4.46750 4.54330 4.69366 4.76478 4.84727 4.90114 4.92491 4.99081 5.03656 5.06333 5.15750 5.18009 5.23422 5.27371 5.37635 5.43189 5.47682 5.60545 5.66994 5.73412 5.77865 5.79057 5.90316 5.91412 6.17138 6.31233 6.50292 6.55870 6.76489 6.82213 7.09802 7.44482 7.91561 8.26173 8.44602 9.11293 10.76883 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025151 B = 0.002326 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.020052 B =12034.520771 C =12614.962832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.128 4.128 4 C 0.077 3.923 5 H 0.071 0.929 6 C 0.111 3.889 7 N -0.728 5.728 8 C 0.564 3.436 9 O -0.533 6.533 10 C -0.152 4.152 11 C -0.085 4.085 12 C -0.139 4.139 13 C -0.051 4.051 14 C -0.085 4.085 15 S -0.112 6.112 16 C -0.509 4.509 17 H 0.091 0.909 18 C 0.094 3.906 19 N -0.876 5.876 20 Si 0.857 3.143 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.239 1.239 24 C -0.016 4.016 25 O -0.377 6.377 26 C 0.027 3.973 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.397 0.603 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.272 0.728 41 H 0.141 0.859 42 H 0.043 0.957 43 H 0.088 0.912 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.811 -19.666 -9.163 26.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.166 4.166 4 C 0.018 3.982 5 H 0.089 0.911 6 C -0.013 4.013 7 N -0.381 5.381 8 C 0.352 3.648 9 O -0.410 6.410 10 C -0.157 4.157 11 C -0.104 4.104 12 C -0.159 4.159 13 C -0.072 4.072 14 C -0.195 4.195 15 S 0.121 5.879 16 C -0.656 4.656 17 H 0.109 0.891 18 C -0.114 4.114 19 N -0.512 5.512 20 Si 0.682 3.318 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.163 1.163 24 C -0.038 4.038 25 O -0.296 6.296 26 C -0.069 4.069 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.232 0.768 37 H 0.134 0.866 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.082 0.918 41 H 0.159 0.841 42 H 0.062 0.938 43 H 0.106 0.894 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.849 -17.936 -9.887 25.897 hybrid contribution 0.198 -0.818 1.008 1.313 sum -15.651 -18.754 -8.879 25.991 Atomic orbital electron populations 1.21762 0.95588 1.01637 1.01974 1.21494 0.96143 0.96388 1.02045 1.21884 0.93317 0.97974 1.03448 1.22478 0.95037 0.93603 0.87039 0.91135 1.21697 0.80192 0.96301 1.03075 1.45758 1.06878 1.09402 1.76064 1.18362 0.87383 0.83301 0.75740 1.90777 1.70083 1.31271 1.48915 1.19831 0.92033 0.94870 1.08962 1.21146 0.94680 0.96124 0.98490 1.21043 0.93758 0.98208 1.02912 1.21918 1.00569 0.91258 0.93416 1.22186 0.95472 0.99504 1.02386 1.83067 1.69009 1.22718 1.13085 1.22241 1.45982 1.09920 0.87450 0.89085 1.24739 0.94399 0.97477 0.94823 1.69927 1.41871 1.30144 1.09297 0.86735 0.79709 0.83099 0.82245 1.19030 1.19790 1.16290 1.21892 0.93197 0.97518 0.91153 1.87984 1.70461 1.42096 1.29013 1.22907 0.94068 0.87113 1.02846 0.92583 0.92785 0.92683 0.91511 0.92301 0.90396 0.90497 0.90234 0.90498 0.76819 0.86591 0.85619 0.84865 0.91822 0.84126 0.93805 0.89376 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.72 5.85 -26.73 -0.16 -0.87 16 3 C -0.13 -0.84 4.92 -26.73 -0.13 -0.97 16 4 C 0.08 0.58 2.33 -26.73 -0.06 0.52 16 5 H 0.07 0.46 7.60 -51.93 -0.39 0.06 16 6 C 0.11 1.15 5.37 -4.04 -0.02 1.13 16 7 N -0.73 -8.69 5.40 -61.25 -0.33 -9.02 16 8 C 0.56 9.23 7.77 -12.32 -0.10 9.14 16 9 O -0.53 -10.67 16.34 5.32 0.09 -10.58 16 10 C -0.15 -2.56 5.87 -105.00 -0.62 -3.17 16 11 C -0.09 -1.16 9.54 -39.12 -0.37 -1.53 16 12 C -0.14 -1.95 10.02 -39.67 -0.40 -2.35 16 13 C -0.05 -0.89 9.79 -39.25 -0.38 -1.27 16 14 C -0.08 -1.78 5.45 -39.00 -0.21 -1.99 16 15 S -0.11 -2.75 19.38 -107.50 -2.08 -4.83 16 16 C -0.51 -14.66 10.01 30.92 0.31 -14.35 16 17 H 0.09 2.84 8.02 -52.49 -0.42 2.42 16 18 C 0.09 2.73 5.50 -17.46 -0.10 2.64 16 19 N -0.88 -26.36 13.97 55.49 0.78 -25.59 16 20 Si 0.86 21.10 27.73 -169.99 -4.71 16.39 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.24 -5.69 6.74 56.52 0.38 -5.30 16 24 C -0.02 -0.32 9.34 -38.92 -0.36 -0.69 16 25 O -0.38 -3.20 9.61 -35.23 -0.34 -3.54 16 26 C 0.03 0.16 10.62 101.05 1.07 1.23 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.42 7.79 -51.93 -0.40 0.02 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.40 3.76 5.55 -40.82 -0.23 3.53 16 37 H 0.12 1.10 6.40 -52.48 -0.34 0.77 16 38 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.14 3.03 7.65 -52.49 -0.40 2.63 16 42 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.04 0.20 7.40 -51.92 -0.38 -0.19 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -33.61 381.92 -8.81 -42.42 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.80 Total: 1.99 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.16 Total: -12.99 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.44 Total: -34.61 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.25 Total: -14.12 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.08 Total: -4.83 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.61 -8.81 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452299407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.443 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds