Wall clock time and date at job start Tue Mar 31 2020 14:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47222 * 2 1 4 4 C 1.53005 * 109.47490 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46453 * 54.99693 * 4 3 2 6 6 C 1.52996 * 109.47514 * 175.00161 * 4 3 2 7 7 N 1.46494 * 109.47185 * 179.23202 * 6 4 3 8 8 C 1.34778 * 120.00184 * 182.69076 * 7 6 4 9 9 O 1.21552 * 119.99796 * 359.97438 * 8 7 6 10 10 C 1.47856 * 120.00041 * 180.02562 * 8 7 6 11 11 C 1.39673 * 120.10473 * 359.71833 * 10 8 7 12 12 C 1.38040 * 120.04014 * 179.79289 * 11 10 8 13 13 C 1.38176 * 120.24348 * 0.46228 * 12 11 10 14 14 C 1.39181 * 120.20318 * 359.79374 * 13 12 11 15 15 S 1.76197 * 120.02254 * 179.97438 * 14 13 12 16 16 C 1.76202 * 100.00098 * 266.26058 * 15 14 13 17 17 H 1.08001 * 119.99854 * 5.24896 * 16 15 14 18 18 C 1.38729 * 120.00230 * 185.24319 * 16 15 14 19 19 N 1.31627 * 119.99900 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47473 * 59.99914 * 20 18 16 22 22 H 1.48501 * 109.46992 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46875 * 299.99932 * 20 18 16 24 24 C 1.38874 * 119.95722 * 359.97043 * 14 13 12 25 25 O 1.42896 * 109.46949 * 295.00497 * 4 3 2 26 26 C 1.42897 * 114.00266 * 118.88840 * 25 4 3 27 27 H 1.08998 * 109.47334 * 299.99988 * 1 2 3 28 28 H 1.09006 * 109.46673 * 60.00229 * 1 2 3 29 29 H 1.08995 * 109.47232 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47101 * 239.99857 * 2 1 3 31 31 H 1.09004 * 109.46648 * 120.00308 * 2 1 3 32 32 H 1.09007 * 109.47199 * 59.99917 * 3 2 1 33 33 H 1.09004 * 109.47561 * 299.99749 * 3 2 1 34 34 H 1.09003 * 109.46733 * 299.23302 * 6 4 3 35 35 H 1.08995 * 109.46933 * 59.22682 * 6 4 3 36 36 H 0.96997 * 119.99721 * 2.69097 * 7 6 4 37 37 H 1.08006 * 119.97914 * 0.02562 * 11 10 8 38 38 H 1.08000 * 119.87714 * 180.21852 * 12 11 10 39 39 H 1.07999 * 119.89586 * 179.76379 * 13 12 11 40 40 H 0.96995 * 120.00185 * 180.02562 * 19 18 16 41 41 H 1.07998 * 120.11985 * 180.02562 * 24 14 13 42 42 H 1.09000 * 109.46877 * 300.61194 * 26 25 4 43 43 H 1.08996 * 109.47177 * 60.60800 * 26 25 4 44 44 H 1.09002 * 109.47150 * 180.61548 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0801 2.8794 -0.1250 7 7 5.5450 2.8811 -0.1060 8 6 6.2182 4.0478 -0.1496 9 8 5.6099 5.0987 -0.2052 10 6 7.6966 4.0494 -0.1309 11 6 8.3977 2.8433 -0.0622 12 6 9.7780 2.8462 -0.0491 13 6 10.4720 4.0402 -0.0943 14 6 9.7836 5.2482 -0.1576 15 16 10.6734 6.7679 -0.2143 16 6 10.7076 7.1666 1.5017 17 1 10.3174 6.4674 2.2265 18 6 11.2360 8.3786 1.9219 19 7 11.7113 9.2309 1.0385 20 14 11.2730 8.8010 3.7411 21 1 12.0783 7.7872 4.4684 22 1 11.8820 10.1428 3.9254 23 1 9.8875 8.8090 4.2756 24 6 8.3950 5.2549 -0.1760 25 8 4.0459 0.8732 1.2219 26 6 4.8343 -0.3054 1.0455 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.7285 3.3090 -1.0631 35 1 3.7052 3.4723 0.7092 36 1 6.0303 2.0424 -0.0620 37 1 7.8595 1.9077 -0.0230 38 1 10.3175 1.9119 0.0005 39 1 11.5519 4.0360 -0.0799 40 1 12.0811 10.0782 1.3323 41 1 7.8582 6.1907 -0.2255 42 1 4.2425 -1.0654 0.5353 43 1 5.7140 -0.0679 0.4473 44 1 5.1478 -0.6820 2.0192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452299409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:52 Heat of formation + Delta-G solvation = -77.974442 kcal Electronic energy + Delta-G solvation = -24039.067753 eV Core-core repulsion = 20467.919053 eV Total energy + Delta-G solvation = -3571.148699 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10253 -38.94705 -37.71704 -35.11065 -34.60026 -32.49330 -31.51651 -30.58847 -30.14420 -26.88219 -26.47711 -25.55419 -23.50488 -22.43327 -21.82756 -21.56637 -20.28950 -18.36317 -17.44543 -17.33976 -16.33551 -15.92581 -15.61704 -15.24017 -15.09706 -14.98153 -14.83665 -14.60622 -14.26093 -13.84762 -13.56100 -13.35085 -13.32996 -13.19257 -12.89278 -12.58287 -12.21929 -12.10990 -11.77463 -11.64662 -11.44596 -11.22908 -11.15139 -11.11915 -11.05801 -11.00140 -10.70236 -10.07821 -9.95336 -9.71329 -9.16701 -9.13967 -9.00053 -8.57947 -8.02630 -6.70141 -6.27090 -4.01207 1.17090 1.66761 3.05718 3.06169 3.23077 3.25343 3.28039 3.33460 3.47856 4.10156 4.26747 4.27420 4.47621 4.54728 4.69557 4.78209 4.87588 4.94515 5.01172 5.07530 5.09483 5.17625 5.23442 5.24070 5.29057 5.38335 5.43088 5.48223 5.48873 5.63138 5.71682 5.76325 5.79636 5.87742 5.90992 5.99045 6.25279 6.34277 6.58850 6.63358 6.78636 6.93581 7.19256 7.48066 7.58772 8.30033 8.33921 9.18569 10.79564 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.002385 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.189488 B =11736.429125 C =12128.990612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.128 4.128 4 C 0.077 3.923 5 H 0.070 0.930 6 C 0.111 3.889 7 N -0.728 5.728 8 C 0.563 3.437 9 O -0.534 6.534 10 C -0.154 4.154 11 C -0.090 4.090 12 C -0.141 4.141 13 C -0.055 4.055 14 C -0.107 4.107 15 S -0.034 6.034 16 C -0.520 4.520 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.870 5.870 20 Si 0.921 3.079 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.273 1.273 24 C -0.018 4.018 25 O -0.376 6.376 26 C 0.028 3.972 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.396 0.604 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.270 0.730 41 H 0.139 0.861 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.845 -21.950 -3.313 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.166 4.166 4 C 0.019 3.981 5 H 0.088 0.912 6 C -0.013 4.013 7 N -0.381 5.381 8 C 0.352 3.648 9 O -0.411 6.411 10 C -0.158 4.158 11 C -0.109 4.109 12 C -0.161 4.161 13 C -0.076 4.076 14 C -0.217 4.217 15 S 0.200 5.800 16 C -0.667 4.667 17 H 0.093 0.907 18 C -0.136 4.136 19 N -0.505 5.505 20 Si 0.747 3.253 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.198 1.198 24 C -0.040 4.040 25 O -0.295 6.295 26 C -0.069 4.069 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.231 0.769 37 H 0.132 0.868 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.080 0.920 41 H 0.157 0.843 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.789 -20.282 -4.103 26.029 hybrid contribution -0.196 -1.055 1.951 2.227 sum -15.986 -21.338 -2.151 26.748 Atomic orbital electron populations 1.21764 0.95601 1.01632 1.01974 1.21491 0.96113 0.96394 1.02042 1.21885 0.93292 0.97952 1.03501 1.22475 0.94741 0.93407 0.87503 0.91210 1.21694 0.80296 0.96277 1.03039 1.45755 1.06792 1.08845 1.76741 1.18403 0.87496 0.83301 0.75605 1.90775 1.69921 1.31184 1.49223 1.19858 0.91882 0.94891 1.09213 1.21102 0.94639 0.96016 0.99146 1.21048 0.93788 0.98188 1.03065 1.21962 1.00472 0.91411 0.93765 1.22864 0.96037 1.01454 1.01389 1.83593 1.67706 1.15612 1.13098 1.22796 1.47341 1.06137 0.90471 0.90665 1.25004 0.94583 0.94878 0.99125 1.69976 1.37811 1.08858 1.33901 0.86175 0.78742 0.77670 0.82724 1.19825 1.20733 1.19781 1.21959 0.93435 0.97255 0.91342 1.87994 1.69781 1.42216 1.29488 1.22902 0.94043 0.87209 1.02736 0.92559 0.92709 0.92788 0.92345 0.91489 0.90483 0.90423 0.90405 0.90413 0.76859 0.86807 0.85876 0.85048 0.92007 0.84275 0.93848 0.94222 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.72 5.83 -26.73 -0.16 -0.88 16 3 C -0.13 -0.86 4.92 -26.73 -0.13 -0.99 16 4 C 0.08 0.60 2.33 -26.73 -0.06 0.53 16 5 H 0.07 0.44 7.60 -51.93 -0.39 0.05 16 6 C 0.11 1.17 5.37 -4.05 -0.02 1.15 16 7 N -0.73 -8.87 5.38 -61.25 -0.33 -9.20 16 8 C 0.56 9.42 7.77 -12.32 -0.10 9.33 16 9 O -0.53 -10.88 16.34 5.32 0.09 -10.80 16 10 C -0.15 -2.65 5.87 -105.00 -0.62 -3.27 16 11 C -0.09 -1.25 9.54 -39.12 -0.37 -1.63 16 12 C -0.14 -2.03 10.02 -39.68 -0.40 -2.43 16 13 C -0.05 -0.99 9.79 -39.25 -0.38 -1.38 16 14 C -0.11 -2.31 5.45 -39.00 -0.21 -2.52 16 15 S -0.03 -0.90 21.41 -107.50 -2.30 -3.20 16 16 C -0.52 -14.82 9.46 30.91 0.29 -14.52 16 17 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 18 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 19 N -0.87 -25.61 13.22 55.49 0.73 -24.88 16 20 Si 0.92 21.68 29.55 -169.99 -5.02 16.65 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 25 O -0.38 -3.37 9.62 -35.23 -0.34 -3.71 16 26 C 0.03 0.17 10.63 101.05 1.07 1.24 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.44 7.82 -51.93 -0.41 0.03 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 3.85 5.55 -40.82 -0.23 3.62 16 37 H 0.11 1.13 6.40 -52.48 -0.34 0.79 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.14 3.12 7.65 -52.49 -0.40 2.72 16 42 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.04 0.21 7.38 -51.93 -0.38 -0.18 16 44 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -33.52 384.63 -9.32 -42.84 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.77 Total: 1.09 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -1.18 Total: -14.58 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.40 Total: -34.08 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.25 Total: -14.51 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.52 -9.32 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452299409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.139 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds