Wall clock time and date at job start Tue Mar 31 2020 14:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47222 * 2 1 4 4 C 1.53005 * 109.47490 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46453 * 54.99693 * 4 3 2 6 6 C 1.52996 * 109.47514 * 175.00161 * 4 3 2 7 7 N 1.46494 * 109.47185 * 179.23202 * 6 4 3 8 8 C 1.34778 * 120.00184 * 182.69076 * 7 6 4 9 9 O 1.21552 * 119.99796 * 359.97438 * 8 7 6 10 10 C 1.47856 * 120.00041 * 180.02562 * 8 7 6 11 11 C 1.39673 * 120.10473 * 359.71833 * 10 8 7 12 12 C 1.38040 * 120.04014 * 179.79289 * 11 10 8 13 13 C 1.38176 * 120.24348 * 0.46228 * 12 11 10 14 14 C 1.39181 * 120.20318 * 359.79374 * 13 12 11 15 15 S 1.76197 * 120.02254 * 179.97438 * 14 13 12 16 16 C 1.76202 * 100.00098 * 266.26058 * 15 14 13 17 17 H 1.08001 * 119.99854 * 5.24896 * 16 15 14 18 18 C 1.38729 * 120.00230 * 185.24319 * 16 15 14 19 19 N 1.31627 * 119.99900 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47473 * 59.99914 * 20 18 16 22 22 H 1.48501 * 109.46992 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46875 * 299.99932 * 20 18 16 24 24 C 1.38874 * 119.95722 * 359.97043 * 14 13 12 25 25 O 1.42896 * 109.46949 * 295.00497 * 4 3 2 26 26 C 1.42897 * 114.00266 * 118.88840 * 25 4 3 27 27 H 1.08998 * 109.47334 * 299.99988 * 1 2 3 28 28 H 1.09006 * 109.46673 * 60.00229 * 1 2 3 29 29 H 1.08995 * 109.47232 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47101 * 239.99857 * 2 1 3 31 31 H 1.09004 * 109.46648 * 120.00308 * 2 1 3 32 32 H 1.09007 * 109.47199 * 59.99917 * 3 2 1 33 33 H 1.09004 * 109.47561 * 299.99749 * 3 2 1 34 34 H 1.09003 * 109.46733 * 299.23302 * 6 4 3 35 35 H 1.08995 * 109.46933 * 59.22682 * 6 4 3 36 36 H 0.96997 * 119.99721 * 2.69097 * 7 6 4 37 37 H 1.08006 * 119.97914 * 0.02562 * 11 10 8 38 38 H 1.08000 * 119.87714 * 180.21852 * 12 11 10 39 39 H 1.07999 * 119.89586 * 179.76379 * 13 12 11 40 40 H 0.96995 * 120.00185 * 180.02562 * 19 18 16 41 41 H 1.07998 * 120.11985 * 180.02562 * 24 14 13 42 42 H 1.09000 * 109.46877 * 300.61194 * 26 25 4 43 43 H 1.08996 * 109.47177 * 60.60800 * 26 25 4 44 44 H 1.09002 * 109.47150 * 180.61548 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0801 2.8794 -0.1250 7 7 5.5450 2.8811 -0.1060 8 6 6.2182 4.0478 -0.1496 9 8 5.6099 5.0987 -0.2052 10 6 7.6966 4.0494 -0.1309 11 6 8.3977 2.8433 -0.0622 12 6 9.7780 2.8462 -0.0491 13 6 10.4720 4.0402 -0.0943 14 6 9.7836 5.2482 -0.1576 15 16 10.6734 6.7679 -0.2143 16 6 10.7076 7.1666 1.5017 17 1 10.3174 6.4674 2.2265 18 6 11.2360 8.3786 1.9219 19 7 11.7113 9.2309 1.0385 20 14 11.2730 8.8010 3.7411 21 1 12.0783 7.7872 4.4684 22 1 11.8820 10.1428 3.9254 23 1 9.8875 8.8090 4.2756 24 6 8.3950 5.2549 -0.1760 25 8 4.0459 0.8732 1.2219 26 6 4.8343 -0.3054 1.0455 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.7285 3.3090 -1.0631 35 1 3.7052 3.4723 0.7092 36 1 6.0303 2.0424 -0.0620 37 1 7.8595 1.9077 -0.0230 38 1 10.3175 1.9119 0.0005 39 1 11.5519 4.0360 -0.0799 40 1 12.0811 10.0782 1.3323 41 1 7.8582 6.1907 -0.2255 42 1 4.2425 -1.0654 0.5353 43 1 5.7140 -0.0679 0.4473 44 1 5.1478 -0.6820 2.0192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452299409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:52 Heat of formation + Delta-G solvation = -99.529624 kcal Electronic energy + Delta-G solvation = -24040.002456 eV Core-core repulsion = 20467.919053 eV Total energy + Delta-G solvation = -3572.083402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32000 -39.75502 -38.99936 -35.85699 -35.45587 -34.66019 -32.65728 -31.95275 -31.06249 -27.75417 -27.33429 -27.28086 -24.69691 -23.67492 -22.70300 -22.18761 -21.47897 -20.01696 -19.06617 -17.97542 -17.46046 -17.08599 -16.93916 -16.66695 -16.32458 -16.12113 -15.76625 -15.57822 -15.45627 -15.05260 -14.67827 -14.60715 -14.28727 -14.06838 -13.84469 -13.73092 -13.25207 -13.12852 -13.04751 -12.96949 -12.67331 -12.61188 -12.40461 -12.25635 -11.94508 -11.77550 -11.74646 -11.47159 -11.28266 -11.18592 -10.78393 -10.50949 -10.30659 -9.91622 -9.71357 -8.81278 -8.39858 -6.19992 -0.20308 0.23846 1.28598 1.38133 1.44042 1.63494 1.76542 2.02099 2.23820 2.77150 2.80719 2.92941 3.40836 3.60666 3.64301 3.91973 3.94541 3.99282 4.04191 4.23264 4.32463 4.35571 4.46336 4.48441 4.54042 4.59429 4.66170 4.69973 4.78148 4.82800 4.90725 4.93154 4.98384 5.07445 5.19943 5.24310 5.29983 5.32498 5.35458 5.37343 5.46930 5.49342 5.84634 6.14759 6.26700 6.39598 7.00211 7.08685 8.66948 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.002385 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.189488 B =11736.429125 C =12128.990612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.128 4.128 4 C 0.086 3.914 5 H 0.094 0.906 6 C 0.107 3.893 7 N -0.703 5.703 8 C 0.560 3.440 9 O -0.582 6.582 10 C -0.157 4.157 11 C -0.063 4.063 12 C -0.119 4.119 13 C -0.062 4.062 14 C -0.130 4.130 15 S -0.094 6.094 16 C -0.537 4.537 17 H 0.067 0.933 18 C 0.019 3.981 19 N -0.905 5.905 20 Si 0.992 3.008 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.272 1.272 24 C -0.045 4.045 25 O -0.399 6.399 26 C 0.018 3.982 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.412 0.588 37 H 0.170 0.830 38 H 0.178 0.822 39 H 0.136 0.864 40 H 0.274 0.726 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.338 -26.217 -2.724 31.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.166 4.166 4 C 0.028 3.972 5 H 0.112 0.888 6 C -0.017 4.017 7 N -0.356 5.356 8 C 0.349 3.651 9 O -0.463 6.463 10 C -0.162 4.162 11 C -0.082 4.082 12 C -0.138 4.138 13 C -0.083 4.083 14 C -0.241 4.241 15 S 0.141 5.859 16 C -0.684 4.684 17 H 0.085 0.915 18 C -0.186 4.186 19 N -0.541 5.541 20 Si 0.813 3.187 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.197 1.197 24 C -0.067 4.067 25 O -0.319 6.319 26 C -0.078 4.078 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.250 0.750 37 H 0.188 0.812 38 H 0.195 0.805 39 H 0.154 0.846 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.283 -24.614 -3.523 29.722 hybrid contribution -0.138 0.082 1.710 1.718 sum -16.421 -24.532 -1.812 29.576 Atomic orbital electron populations 1.21772 0.95460 1.02006 1.01847 1.21450 0.96215 0.95595 1.02307 1.21886 0.92709 0.98669 1.03308 1.22424 0.95112 0.91507 0.88130 0.88808 1.21871 0.78988 0.98424 1.02417 1.45571 1.07577 1.07987 1.74447 1.18426 0.87389 0.83854 0.75478 1.90756 1.70661 1.33214 1.51717 1.19952 0.92394 0.94870 1.09023 1.21672 0.94774 0.96505 0.95208 1.21557 0.93980 0.98475 0.99820 1.22091 1.01010 0.91428 0.93730 1.22518 0.95993 1.00091 1.05476 1.83465 1.69257 1.20252 1.12927 1.23033 1.47471 1.06541 0.91402 0.91494 1.26015 0.93913 0.94578 1.04138 1.70099 1.38572 1.09312 1.36144 0.85105 0.78826 0.78081 0.76669 1.18425 1.19478 1.19697 1.21631 0.93268 0.97664 0.94145 1.87980 1.70358 1.43378 1.30160 1.23121 0.94518 0.86625 1.03556 0.93204 0.92380 0.92168 0.91129 0.92067 0.91889 0.89547 0.90011 0.92579 0.74980 0.81247 0.80489 0.84575 0.91676 0.88013 0.92438 0.92727 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.68 16 2 C -0.12 -1.10 5.83 30.59 0.18 -0.92 16 3 C -0.13 -1.46 4.92 30.59 0.15 -1.31 16 4 C 0.09 1.10 2.33 30.59 0.07 1.17 16 5 H 0.09 0.77 7.60 -2.39 -0.02 0.75 16 6 C 0.11 2.08 5.37 86.38 0.46 2.55 16 7 N -0.70 -15.35 5.38 -465.98 -2.51 -17.86 16 8 C 0.56 18.39 7.77 86.79 0.67 19.07 16 9 O -0.58 -24.68 16.34 -3.88 -0.06 -24.75 16 10 C -0.16 -5.26 5.87 -20.11 -0.12 -5.38 16 11 C -0.06 -1.46 9.54 22.57 0.22 -1.25 16 12 C -0.12 -2.85 10.02 22.21 0.22 -2.63 16 13 C -0.06 -2.14 9.79 22.48 0.22 -1.92 16 14 C -0.13 -5.80 5.45 22.65 0.12 -5.67 16 15 S -0.09 -5.18 21.41 -56.49 -1.21 -6.39 16 16 C -0.54 -31.97 9.46 67.94 0.64 -31.33 16 17 H 0.07 3.94 7.79 -2.91 -0.02 3.92 16 18 C 0.02 1.10 5.49 84.84 0.47 1.56 16 19 N -0.91 -55.15 13.22 21.64 0.29 -54.87 16 20 Si 0.99 45.25 29.55 68.60 2.03 47.28 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 C -0.05 -1.96 9.34 22.70 0.21 -1.75 16 25 O -0.40 -6.01 9.62 -148.98 -1.43 -7.44 16 26 C 0.02 0.15 10.63 113.37 1.20 1.35 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.65 7.82 -2.39 -0.02 0.63 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.41 6.08 5.55 -92.71 -0.51 5.56 16 37 H 0.17 2.07 6.40 -2.91 -0.02 2.05 16 38 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 39 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.10 5.06 7.65 -2.91 -0.02 5.04 16 42 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.05 0.28 7.38 -2.39 -0.02 0.26 16 44 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -79.89 384.63 3.02 -76.87 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.48 Total: 14.30 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 5.44 Total: -27.14 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -2.22 Total: -72.73 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -1.50 Total: -32.19 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -1.21 Total: -6.39 kcal Total: -79.89 3.02 -76.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452299409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.660 kcal (2) G-P(sol) polarization free energy of solvation -79.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds