Wall clock time and date at job start Tue Mar 31 2020 14:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46513 * 2 1 4 4 C 1.52992 * 109.47513 * 240.00305 * 2 1 3 5 5 O 1.42896 * 109.47486 * 59.99591 * 4 2 1 6 6 C 1.53001 * 109.46935 * 119.99817 * 2 1 3 7 7 C 1.53004 * 109.47164 * 300.00111 * 6 2 1 8 8 N 1.46492 * 109.47018 * 180.02562 * 7 6 2 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 6 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47860 * 119.99972 * 179.97438 * 9 8 7 12 12 C 1.39661 * 120.10534 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.04191 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67598 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46964 * 60.00073 * 21 19 17 23 23 H 1.48496 * 109.46794 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46962 * 299.99839 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.08999 * 109.47791 * 300.00028 * 1 2 3 27 27 H 1.09002 * 109.46803 * 60.00295 * 1 2 3 28 28 H 1.09004 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46912 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47572 * 299.99785 * 3 2 1 31 31 H 1.08997 * 109.47243 * 60.00324 * 3 2 1 32 32 H 1.08998 * 109.47535 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47184 * 299.99907 * 4 2 1 34 34 H 0.96701 * 114.00141 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.46773 * 180.02562 * 6 2 1 36 36 H 1.08994 * 109.47379 * 60.00535 * 6 2 1 37 37 H 1.09005 * 109.46655 * 60.00207 * 7 6 2 38 38 H 1.09002 * 109.47164 * 300.00138 * 7 6 2 39 39 H 0.96996 * 120.00373 * 359.97438 * 8 7 6 40 40 H 1.08002 * 119.98248 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 42 42 H 1.08006 * 119.89818 * 180.31471 * 14 13 12 43 43 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 8 1.5638 -0.0476 -2.4160 6 6 2.0400 -0.7212 1.2493 7 6 1.5299 0.0001 2.4985 8 7 2.0187 -0.6901 3.6946 9 6 1.6928 -0.2299 4.9188 10 8 0.9936 0.7581 5.0303 11 6 2.1857 -0.9270 6.1261 12 6 2.9887 -2.0627 6.0005 13 6 3.4477 -2.7127 7.1285 14 6 3.1213 -2.2402 8.3852 15 6 2.3170 -1.1126 8.5222 16 16 1.8972 -0.5189 10.1271 17 6 0.3406 -1.3138 10.3499 18 1 -0.0178 -2.0160 9.6117 19 6 -0.4247 -1.0378 11.4737 20 7 0.0122 -0.1825 12.3736 21 14 -2.0748 -1.8811 11.7101 22 1 -1.8758 -3.3517 11.7640 23 1 -2.6901 -1.4175 12.9796 24 1 -2.9703 -1.5439 10.5745 25 6 1.8502 -0.4525 7.3931 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4427 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1301 -0.7215 -1.2490 33 1 1.6768 -1.7488 -1.2493 34 1 1.8489 -0.4513 -3.2471 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 0.4399 0.0000 2.4984 38 1 1.8932 1.0278 2.4985 39 1 2.5763 -1.4788 3.6057 40 1 3.2507 -2.4327 5.0202 41 1 4.0681 -3.5910 7.0283 42 1 3.4876 -2.7501 9.2640 43 1 -0.5231 0.0108 13.1591 44 1 1.2293 0.4252 7.4962 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452433320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:16 Heat of formation + Delta-G solvation = -83.156215 kcal Electronic energy + Delta-G solvation = -23883.610831 eV Core-core repulsion = 20312.237433 eV Total energy + Delta-G solvation = -3571.373398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.05427 -38.96438 -37.78423 -36.15893 -34.28316 -32.50174 -31.14963 -30.54732 -28.83999 -27.58498 -26.96610 -25.56290 -24.19071 -22.80093 -22.02772 -20.48904 -19.15555 -18.24966 -17.72892 -17.31214 -16.37301 -15.83970 -15.74399 -15.36847 -15.19150 -14.84545 -14.60153 -14.38069 -14.20284 -13.95184 -13.52007 -13.34138 -13.07185 -13.02926 -12.90129 -12.30698 -12.23209 -12.07385 -11.64184 -11.60714 -11.21484 -11.16806 -11.11764 -11.10947 -11.06582 -10.75985 -10.70344 -10.39907 -9.98275 -9.77102 -9.15431 -9.13821 -9.00866 -8.58152 -8.02969 -6.70774 -6.27805 -4.01863 1.16669 1.66508 3.03651 3.06986 3.22043 3.24297 3.27235 3.46939 3.79631 4.09487 4.26717 4.33937 4.35209 4.63477 4.79723 4.82726 4.93019 4.99232 5.07637 5.09142 5.12327 5.23584 5.23795 5.26269 5.48050 5.50168 5.61052 5.64222 5.67149 5.70392 5.76420 5.83499 5.87510 5.98798 6.06733 6.08932 6.25150 6.37258 6.58760 6.63269 6.93335 7.18559 7.19140 7.49186 7.57905 8.30017 8.33044 9.17797 10.78835 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.002260 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.199409 B =12385.990715 C =13009.831003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.143 4.143 4 C 0.087 3.913 5 O -0.569 6.569 6 C -0.122 4.122 7 C 0.118 3.882 8 N -0.733 5.733 9 C 0.563 3.437 10 O -0.534 6.534 11 C -0.154 4.154 12 C -0.090 4.090 13 C -0.141 4.141 14 C -0.055 4.055 15 C -0.107 4.107 16 S -0.034 6.034 17 C -0.520 4.520 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.870 5.870 21 Si 0.921 3.079 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.273 1.273 25 C -0.019 4.019 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.378 0.622 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.398 0.602 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.270 0.730 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.367 -4.659 -25.970 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 C -0.200 4.200 4 C 0.009 3.991 5 O -0.374 6.374 6 C -0.160 4.160 7 C -0.006 4.006 8 N -0.387 5.387 9 C 0.351 3.649 10 O -0.411 6.411 11 C -0.159 4.159 12 C -0.110 4.110 13 C -0.161 4.161 14 C -0.077 4.077 15 C -0.218 4.218 16 S 0.200 5.800 17 C -0.668 4.668 18 H 0.093 0.907 19 C -0.136 4.136 20 N -0.505 5.505 21 Si 0.747 3.253 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.198 1.198 25 C -0.041 4.041 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.224 0.776 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.233 0.767 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.080 0.920 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.092 -2.715 -24.493 25.643 hybrid contribution -1.069 -2.205 -1.203 2.730 sum 6.024 -4.919 -25.696 26.847 Atomic orbital electron populations 1.21894 0.93642 1.01958 1.02593 1.20469 0.96845 0.96267 0.92374 1.21889 1.00675 0.94893 1.02586 1.22190 0.97045 0.94549 0.85343 1.86476 1.77550 1.57370 1.16003 1.21792 1.01317 0.99757 0.93166 1.21447 0.99826 0.96586 0.82711 1.45898 1.54735 1.32523 1.05525 1.18411 0.79671 0.83749 0.83060 1.90777 1.37511 1.26041 1.86756 1.19867 1.03951 0.98733 0.93368 1.21124 0.96897 0.94623 0.98311 1.21054 1.01935 1.00610 0.92505 1.21959 0.94573 0.93841 0.97283 1.22860 0.99490 0.97659 1.01741 1.83597 1.25881 1.64137 1.06372 1.22793 1.04339 1.29143 1.10488 0.90677 1.25005 0.98533 0.95076 0.94971 1.69975 1.38090 1.32217 1.10239 0.86177 0.81847 0.79552 0.77747 1.19827 1.20724 1.19793 1.21961 0.94390 0.97918 0.89793 0.92032 0.91696 0.92814 0.92826 0.91695 0.92049 0.93665 0.93668 0.77577 0.90972 0.90970 0.91006 0.91001 0.76694 0.86563 0.85874 0.85071 0.91998 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 7.98 37.16 0.30 -0.85 16 2 C -0.06 -0.42 0.63 -154.51 -0.10 -0.52 16 3 C -0.14 -1.12 7.98 37.16 0.30 -0.82 16 4 C 0.09 0.51 5.91 37.15 0.22 0.73 16 5 O -0.57 -3.74 12.31 -35.23 -0.43 -4.17 16 6 C -0.12 -0.83 4.38 -26.73 -0.12 -0.95 16 7 C 0.12 1.18 4.97 -4.04 -0.02 1.16 16 8 N -0.73 -8.37 5.51 -61.24 -0.34 -8.71 16 9 C 0.56 9.16 7.77 -12.32 -0.10 9.07 16 10 O -0.53 -10.76 16.34 5.32 0.09 -10.67 16 11 C -0.15 -2.61 5.87 -105.00 -0.62 -3.23 16 12 C -0.09 -1.22 9.54 -39.12 -0.37 -1.60 16 13 C -0.14 -2.00 10.02 -39.67 -0.40 -2.40 16 14 C -0.06 -0.99 9.79 -39.25 -0.38 -1.38 16 15 C -0.11 -2.30 5.45 -39.00 -0.21 -2.51 16 16 S -0.03 -0.89 21.40 -107.50 -2.30 -3.19 16 17 C -0.52 -14.76 9.46 30.92 0.29 -14.47 16 18 H 0.08 2.11 7.79 -52.49 -0.41 1.70 16 19 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 20 N -0.87 -25.55 13.22 55.49 0.73 -24.82 16 21 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 25 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 26 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 27 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16 31 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.38 0.87 9.12 45.56 0.42 1.29 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 38 H 0.07 0.79 6.43 -51.93 -0.33 0.45 16 39 H 0.40 3.36 6.50 -40.82 -0.27 3.09 16 40 H 0.12 1.08 6.40 -52.49 -0.34 0.74 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.13 2.23 8.06 -52.48 -0.42 1.80 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.14 3.10 7.65 -52.49 -0.40 2.70 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -34.30 376.06 -8.92 -43.22 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.65 Total: 2.67 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.67 Total: -16.54 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.40 Total: -33.52 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.35 Total: -14.84 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.30 -8.92 -43.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452433320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.933 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds