Wall clock time and date at job start Tue Mar 31 2020 14:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46513 * 2 1 4 4 C 1.52992 * 109.47513 * 240.00305 * 2 1 3 5 5 O 1.42896 * 109.47486 * 59.99591 * 4 2 1 6 6 C 1.53001 * 109.46935 * 119.99817 * 2 1 3 7 7 C 1.53004 * 109.47164 * 300.00111 * 6 2 1 8 8 N 1.46492 * 109.47018 * 180.02562 * 7 6 2 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 6 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47860 * 119.99972 * 179.97438 * 9 8 7 12 12 C 1.39661 * 120.10534 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.04191 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67598 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46964 * 60.00073 * 21 19 17 23 23 H 1.48496 * 109.46794 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46962 * 299.99839 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.08999 * 109.47791 * 300.00028 * 1 2 3 27 27 H 1.09002 * 109.46803 * 60.00295 * 1 2 3 28 28 H 1.09004 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46912 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47572 * 299.99785 * 3 2 1 31 31 H 1.08997 * 109.47243 * 60.00324 * 3 2 1 32 32 H 1.08998 * 109.47535 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47184 * 299.99907 * 4 2 1 34 34 H 0.96701 * 114.00141 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.46773 * 180.02562 * 6 2 1 36 36 H 1.08994 * 109.47379 * 60.00535 * 6 2 1 37 37 H 1.09005 * 109.46655 * 60.00207 * 7 6 2 38 38 H 1.09002 * 109.47164 * 300.00138 * 7 6 2 39 39 H 0.96996 * 120.00373 * 359.97438 * 8 7 6 40 40 H 1.08002 * 119.98248 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 42 42 H 1.08006 * 119.89818 * 180.31471 * 14 13 12 43 43 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 8 1.5638 -0.0476 -2.4160 6 6 2.0400 -0.7212 1.2493 7 6 1.5299 0.0001 2.4985 8 7 2.0187 -0.6901 3.6946 9 6 1.6928 -0.2299 4.9188 10 8 0.9936 0.7581 5.0303 11 6 2.1857 -0.9270 6.1261 12 6 2.9887 -2.0627 6.0005 13 6 3.4477 -2.7127 7.1285 14 6 3.1213 -2.2402 8.3852 15 6 2.3170 -1.1126 8.5222 16 16 1.8972 -0.5189 10.1271 17 6 0.3406 -1.3138 10.3499 18 1 -0.0178 -2.0160 9.6117 19 6 -0.4247 -1.0378 11.4737 20 7 0.0122 -0.1825 12.3736 21 14 -2.0748 -1.8811 11.7101 22 1 -1.8758 -3.3517 11.7640 23 1 -2.6901 -1.4175 12.9796 24 1 -2.9703 -1.5439 10.5745 25 6 1.8502 -0.4525 7.3931 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4427 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1301 -0.7215 -1.2490 33 1 1.6768 -1.7488 -1.2493 34 1 1.8489 -0.4513 -3.2471 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 0.4399 0.0000 2.4984 38 1 1.8932 1.0278 2.4985 39 1 2.5763 -1.4788 3.6057 40 1 3.2507 -2.4327 5.0202 41 1 4.0681 -3.5910 7.0283 42 1 3.4876 -2.7501 9.2640 43 1 -0.5231 0.0108 13.1591 44 1 1.2293 0.4252 7.4962 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452433320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:16 Heat of formation + Delta-G solvation = -107.932514 kcal Electronic energy + Delta-G solvation = -23884.685212 eV Core-core repulsion = 20312.237433 eV Total energy + Delta-G solvation = -3572.447779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26620 -39.67285 -39.01476 -36.83374 -35.24229 -34.66036 -32.42086 -31.91062 -29.69972 -28.21171 -27.74948 -27.48580 -25.25057 -23.92771 -23.21889 -21.72818 -20.15400 -19.60354 -18.88073 -18.18183 -17.44783 -16.97646 -16.93831 -16.68512 -16.61213 -15.96507 -15.75981 -15.48634 -15.17047 -15.01994 -14.74405 -14.60935 -14.31464 -13.89236 -13.65564 -13.61014 -13.25764 -13.10903 -12.96876 -12.83632 -12.75079 -12.65188 -12.39224 -12.28378 -11.83298 -11.76273 -11.70215 -11.30197 -11.25022 -11.11724 -10.79617 -10.75618 -10.24969 -9.88396 -9.69475 -8.81198 -8.39699 -6.19879 -0.17919 0.25796 1.28655 1.38184 1.44286 1.64197 1.79830 2.05543 2.24271 2.80771 2.93079 3.33972 3.41279 3.63407 3.80883 3.85625 3.94913 4.03145 4.13478 4.21400 4.25164 4.36643 4.48597 4.49414 4.62698 4.65566 4.69251 4.71328 4.85448 4.92290 4.96946 4.98641 5.07537 5.12267 5.20613 5.22844 5.32129 5.35678 5.37623 5.43969 5.49939 5.51719 5.87188 6.14769 6.47708 6.97943 7.00244 7.14637 8.67074 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.002260 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.199409 B =12385.990715 C =13009.831003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.142 4.142 4 C 0.088 3.912 5 O -0.591 6.591 6 C -0.110 4.110 7 C 0.115 3.885 8 N -0.706 5.706 9 C 0.559 3.441 10 O -0.585 6.585 11 C -0.157 4.157 12 C -0.061 4.061 13 C -0.120 4.120 14 C -0.063 4.063 15 C -0.130 4.130 16 S -0.096 6.096 17 C -0.537 4.537 18 H 0.067 0.933 19 C 0.018 3.982 20 N -0.906 5.906 21 Si 0.992 3.008 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.047 4.047 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.395 0.605 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.418 0.582 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.135 0.865 43 H 0.274 0.726 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.805 -8.223 -29.035 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 C -0.199 4.199 4 C 0.010 3.990 5 O -0.399 6.399 6 C -0.148 4.148 7 C -0.008 4.008 8 N -0.359 5.359 9 C 0.348 3.652 10 O -0.466 6.466 11 C -0.162 4.162 12 C -0.080 4.080 13 C -0.139 4.139 14 C -0.084 4.084 15 C -0.241 4.241 16 S 0.138 5.862 17 C -0.684 4.684 18 H 0.085 0.915 19 C -0.187 4.187 20 N -0.542 5.542 21 Si 0.814 3.186 22 H -0.184 1.184 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.069 4.069 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.245 0.755 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.257 0.743 40 H 0.194 0.806 41 H 0.195 0.805 42 H 0.153 0.847 43 H 0.083 0.917 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.575 -6.320 -27.609 29.593 hybrid contribution -1.413 -1.099 -0.455 1.847 sum 7.162 -7.419 -28.064 29.899 Atomic orbital electron populations 1.21870 0.94733 1.02028 1.01355 1.20485 0.95965 0.95963 0.93673 1.21864 1.01191 0.95494 1.01365 1.22183 0.97799 0.94645 0.84346 1.86434 1.78034 1.58239 1.17185 1.21720 1.02469 0.99939 0.90641 1.21555 0.99153 0.96626 0.83488 1.45680 1.53487 1.32487 1.04212 1.18430 0.79328 0.83198 0.84290 1.90761 1.39988 1.28381 1.87511 1.19967 1.04434 0.99931 0.91900 1.21735 0.93380 0.91822 1.01045 1.21572 1.00679 1.01265 0.90419 1.22082 0.93941 0.92639 0.99733 1.22502 1.02710 1.00298 0.98624 1.83475 1.25681 1.65656 1.11346 1.23029 1.05372 1.29338 1.10641 0.91457 1.26026 1.02501 0.95705 0.94458 1.70102 1.39686 1.33577 1.10812 0.85099 0.76695 0.78937 0.77917 1.18395 1.19528 1.19643 1.21630 0.95760 0.97757 0.91750 0.93450 0.92771 0.92044 0.91882 0.92794 0.93414 0.92230 0.92373 0.75542 0.88867 0.89078 0.92467 0.92189 0.74349 0.80567 0.80521 0.84711 0.91691 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 7.98 71.98 0.57 -1.57 16 2 C -0.06 -0.72 0.63 -52.18 -0.03 -0.75 16 3 C -0.14 -2.07 7.98 71.98 0.57 -1.50 16 4 C 0.09 0.75 5.91 71.98 0.43 1.18 16 5 O -0.59 -6.49 12.31 -148.98 -1.83 -8.32 16 6 C -0.11 -1.08 4.38 30.60 0.13 -0.94 16 7 C 0.11 2.09 4.97 86.38 0.43 2.52 16 8 N -0.71 -13.92 5.51 -465.95 -2.57 -16.48 16 9 C 0.56 17.75 7.77 86.79 0.67 18.43 16 10 O -0.59 -24.59 16.34 -3.88 -0.06 -24.65 16 11 C -0.16 -5.11 5.87 -20.11 -0.12 -5.23 16 12 C -0.06 -1.35 9.54 22.57 0.22 -1.13 16 13 C -0.12 -2.80 10.02 22.21 0.22 -2.58 16 14 C -0.06 -2.17 9.79 22.48 0.22 -1.95 16 15 C -0.13 -5.80 5.45 22.65 0.12 -5.67 16 16 S -0.10 -5.33 21.40 -56.49 -1.21 -6.54 16 17 C -0.54 -31.87 9.46 67.94 0.64 -31.23 16 18 H 0.07 3.94 7.79 -2.91 -0.02 3.92 16 19 C 0.02 1.07 5.49 84.84 0.47 1.53 16 20 N -0.91 -55.20 13.22 21.64 0.29 -54.91 16 21 Si 0.99 45.08 29.55 68.60 2.03 47.11 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C -0.05 -2.03 9.34 22.70 0.21 -1.82 16 26 H 0.05 0.83 6.43 -2.39 -0.02 0.81 16 27 H 0.05 0.92 7.68 -2.39 -0.02 0.90 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.05 0.90 7.68 -2.39 -0.02 0.88 16 31 H 0.05 0.81 6.43 -2.39 -0.02 0.79 16 32 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 34 H 0.40 0.90 9.12 -74.06 -0.68 0.23 16 35 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 1.25 6.43 -2.38 -0.02 1.23 16 38 H 0.06 1.28 6.43 -2.39 -0.02 1.26 16 39 H 0.42 4.67 6.50 -92.71 -0.60 4.07 16 40 H 0.18 1.80 6.40 -2.91 -0.02 1.78 16 41 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.10 4.96 7.65 -2.91 -0.02 4.94 16 Total: -1.00 -82.79 376.06 1.15 -81.64 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -0.25 Total: 12.88 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 4.76 Total: -30.72 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -2.28 Total: -71.39 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.90 Total: -32.97 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -1.21 Total: -6.54 kcal Total: -82.79 1.15 -81.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452433320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.296 kcal (2) G-P(sol) polarization free energy of solvation -82.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds