Wall clock time and date at job start Tue Mar 31 2020 14:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47155 * 2 1 4 4 C 1.52994 * 109.47411 * 60.00175 * 3 2 1 5 5 C 1.53004 * 109.47128 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47087 * 185.00037 * 5 3 2 7 7 C 1.34772 * 119.99774 * 179.97438 * 6 5 3 8 8 O 1.21552 * 120.00061 * 0.02562 * 7 6 5 9 9 C 1.47860 * 120.00133 * 179.97438 * 7 6 5 10 10 C 1.39674 * 120.09890 * 359.72892 * 9 7 6 11 11 C 1.38040 * 120.04210 * 179.78632 * 10 9 7 12 12 C 1.38179 * 120.24068 * 0.46816 * 11 10 9 13 13 C 1.39185 * 120.20011 * 359.78664 * 12 11 10 14 14 S 1.76202 * 120.01737 * 179.97438 * 13 12 11 15 15 C 1.76203 * 99.99892 * 265.52509 * 14 13 12 16 16 H 1.08004 * 120.00108 * 5.12862 * 15 14 13 17 17 C 1.38725 * 120.00122 * 185.11676 * 15 14 13 18 18 N 1.31632 * 119.99963 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00075 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46824 * 90.00392 * 19 17 15 21 21 H 1.48501 * 109.47000 * 210.00262 * 19 17 15 22 22 H 1.48496 * 109.46956 * 330.00370 * 19 17 15 23 23 C 1.38875 * 119.95891 * 359.97438 * 13 12 11 24 24 O 1.42906 * 109.46894 * 300.00131 * 3 2 1 25 25 C 1.42894 * 113.99908 * 299.99751 * 24 3 2 26 26 H 1.09006 * 109.47143 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46799 * 300.00059 * 1 2 3 28 28 H 1.08994 * 109.47571 * 59.99622 * 1 2 3 29 29 H 1.08999 * 109.46709 * 240.00060 * 2 1 3 30 30 H 1.09005 * 109.46846 * 120.00247 * 2 1 3 31 31 H 1.08994 * 109.47385 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.47447 * 300.00303 * 4 3 2 33 33 H 1.09005 * 109.47077 * 60.00023 * 4 3 2 34 34 H 1.09001 * 109.46647 * 304.99344 * 5 3 2 35 35 H 1.08991 * 109.47166 * 64.99211 * 5 3 2 36 36 H 0.97000 * 119.99807 * 359.97438 * 6 5 3 37 37 H 1.08011 * 119.98232 * 0.02562 * 10 9 7 38 38 H 1.07993 * 119.88133 * 180.21323 * 11 10 9 39 39 H 1.07994 * 119.90125 * 179.76520 * 12 11 10 40 40 H 0.96998 * 119.99543 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.11653 * 180.02562 * 23 13 12 42 42 H 1.09003 * 109.47182 * 180.02562 * 25 24 3 43 43 H 1.08996 * 109.47497 * 299.99889 * 25 24 3 44 44 H 1.09004 * 109.46915 * 60.00782 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 1.2492 5 6 3.5700 1.4424 -0.0006 6 7 4.0584 2.8184 0.1197 7 6 5.3835 3.0636 0.1412 8 8 6.1733 2.1433 0.0602 9 6 5.8765 4.4524 0.2621 10 6 4.9708 5.5122 0.3486 11 6 5.4323 6.8078 0.4659 12 6 6.7901 7.0636 0.4886 13 6 7.7015 6.0156 0.3978 14 16 9.4318 6.3472 0.4267 15 6 9.7579 6.4218 -1.3033 16 1 8.9435 6.3556 -2.0097 17 6 11.0605 6.5657 -1.7581 18 7 12.0531 6.6460 -0.8972 19 14 11.4061 6.6454 -3.5922 20 1 11.3558 8.0590 -4.0443 21 1 12.7539 6.0856 -3.8667 22 1 10.3835 5.8550 -4.3234 23 6 7.2463 4.7084 0.2845 24 8 1.5636 2.1161 -1.1668 25 6 1.9853 1.5198 -2.3950 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8931 3.1915 1.2490 32 1 0.4401 2.1637 1.2493 33 1 1.8935 1.6499 2.1392 34 1 3.9337 0.8529 0.8410 35 1 3.9330 1.0082 -0.9321 36 1 3.4281 3.5529 0.1840 37 1 3.9086 5.3175 0.3275 38 1 4.7297 7.6250 0.5360 39 1 7.1451 8.0797 0.5768 40 1 12.9639 6.7463 -1.2153 41 1 7.9513 3.8933 0.2143 42 1 1.5828 2.0896 -3.2326 43 1 3.0741 1.5214 -2.4448 44 1 1.6207 0.4937 -2.4447 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452717006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:19 Heat of formation + Delta-G solvation = -67.008852 kcal Electronic energy + Delta-G solvation = -24620.884034 eV Core-core repulsion = 21050.210838 eV Total energy + Delta-G solvation = -3570.673196 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41576 -39.29842 -37.70840 -34.92230 -33.86211 -32.49810 -31.16577 -30.54152 -29.92745 -27.68452 -26.43507 -25.56142 -24.35167 -22.90984 -22.08955 -20.46509 -20.12579 -18.41632 -17.45641 -16.82906 -16.24178 -16.04988 -15.70868 -15.35427 -15.19780 -14.84621 -14.78583 -14.48567 -14.21078 -13.64900 -13.61599 -13.36663 -12.99997 -12.85330 -12.78922 -12.58963 -12.30329 -12.19542 -12.04341 -11.76978 -11.63127 -11.30103 -11.14738 -11.11830 -11.07302 -10.74601 -10.69419 -10.00693 -9.92663 -9.71430 -9.17204 -9.15229 -8.99160 -8.56800 -8.01787 -6.70311 -6.27791 -4.01629 1.18106 1.68314 3.02503 3.05507 3.20830 3.23903 3.28881 3.44368 3.50068 4.10165 4.21042 4.27414 4.37268 4.43229 4.83450 4.85967 4.97439 5.07245 5.08091 5.08773 5.11804 5.19553 5.25998 5.28175 5.32428 5.42089 5.48484 5.52548 5.54458 5.57521 5.60679 5.75650 5.83263 5.88945 5.93797 6.00789 6.26901 6.33703 6.60371 6.65510 6.83903 6.94608 7.20652 7.50836 7.58421 8.30062 8.33608 9.18053 10.78948 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.002659 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.270555 B =10525.954958 C =11067.244294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.103 3.897 4 C -0.142 4.142 5 C 0.095 3.905 6 N -0.725 5.725 7 C 0.563 3.437 8 O -0.537 6.537 9 C -0.154 4.154 10 C -0.089 4.089 11 C -0.141 4.141 12 C -0.055 4.055 13 C -0.107 4.107 14 S -0.035 6.035 15 C -0.519 4.519 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.870 5.870 19 Si 0.921 3.079 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.271 1.271 23 C -0.019 4.019 24 O -0.372 6.372 25 C 0.022 3.978 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.402 0.598 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.270 0.730 41 H 0.139 0.861 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.151 -8.993 2.347 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.063 3.937 4 C -0.199 4.199 5 C -0.030 4.030 6 N -0.379 5.379 7 C 0.351 3.649 8 O -0.414 6.414 9 C -0.159 4.159 10 C -0.108 4.108 11 C -0.161 4.161 12 C -0.076 4.076 13 C -0.218 4.218 14 S 0.199 5.801 15 C -0.666 4.666 16 H 0.094 0.906 17 C -0.136 4.136 18 N -0.506 5.506 19 Si 0.747 3.253 20 H -0.202 1.202 21 H -0.206 1.206 22 H -0.196 1.196 23 C -0.040 4.040 24 O -0.291 6.291 25 C -0.075 4.075 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.239 0.761 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.156 0.844 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.712 -9.348 3.210 24.770 hybrid contribution -0.742 -0.065 -2.263 2.383 sum -23.454 -9.414 0.947 25.290 Atomic orbital electron populations 1.21730 0.94581 1.01551 1.02679 1.22051 0.97527 0.95717 1.03267 1.21797 0.91457 0.93042 0.87402 1.21823 1.02363 1.00847 0.94829 1.21921 0.93580 0.84395 1.03055 1.45818 1.07104 1.08838 1.76152 1.18433 0.81767 0.89000 0.75683 1.90769 1.55341 1.45874 1.49431 1.19844 0.94825 0.92000 1.09242 1.21144 0.98089 0.92733 0.98844 1.21057 0.95828 0.96216 1.02962 1.21961 0.92288 0.99428 0.93942 1.22848 1.03390 0.94063 1.01464 1.83600 0.92618 1.91858 1.12002 1.22835 0.95618 1.57982 0.90192 0.90637 1.25005 0.94965 0.94439 0.99197 1.69991 0.99813 1.46559 1.34205 0.86120 0.77878 0.78531 0.82793 1.20162 1.20649 1.19576 1.21941 0.93556 0.97124 0.91410 1.87967 1.74112 1.53835 1.13231 1.22842 0.99830 0.98400 0.86403 0.92734 0.92184 0.92074 0.91197 0.90506 0.91771 0.90971 0.90651 0.90460 0.91002 0.76084 0.86552 0.85840 0.85069 0.92068 0.84355 0.89530 0.93446 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.41 37.16 0.35 -0.52 16 2 C -0.15 -0.96 4.61 -26.73 -0.12 -1.09 16 3 C 0.10 0.82 0.48 -90.62 -0.04 0.77 16 4 C -0.14 -0.97 8.26 37.15 0.31 -0.67 16 5 C 0.09 0.99 4.39 -4.04 -0.02 0.97 16 6 N -0.72 -8.76 5.14 -61.24 -0.31 -9.07 16 7 C 0.56 9.29 7.77 -12.32 -0.10 9.20 16 8 O -0.54 -10.80 16.34 5.32 0.09 -10.71 16 9 C -0.15 -2.66 5.87 -105.00 -0.62 -3.27 16 10 C -0.09 -1.25 9.54 -39.12 -0.37 -1.63 16 11 C -0.14 -2.05 10.02 -39.68 -0.40 -2.45 16 12 C -0.06 -1.00 9.79 -39.25 -0.38 -1.38 16 13 C -0.11 -2.31 5.45 -38.99 -0.21 -2.53 16 14 S -0.04 -0.92 21.41 -107.50 -2.30 -3.22 16 15 C -0.52 -14.76 9.46 30.91 0.29 -14.46 16 16 H 0.08 2.13 7.79 -52.48 -0.41 1.72 16 17 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 18 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 19 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.02 -0.38 9.34 -38.92 -0.36 -0.75 16 24 O -0.37 -3.39 9.62 -35.23 -0.34 -3.73 16 25 C 0.02 0.17 10.21 101.05 1.03 1.20 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.33 6.43 -51.92 -0.33 0.00 16 28 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 29 H 0.07 0.45 6.54 -51.93 -0.34 0.11 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.45 6.58 -51.93 -0.34 0.11 16 32 H 0.07 0.45 6.43 -51.93 -0.33 0.11 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.81 6.28 -51.93 -0.33 0.49 16 36 H 0.40 4.08 5.02 -40.82 -0.20 3.88 16 37 H 0.12 1.21 6.40 -52.48 -0.34 0.87 16 38 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 39 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.14 3.10 7.65 -52.49 -0.40 2.70 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.43 6.31 -51.93 -0.33 0.10 16 44 H 0.05 0.30 6.42 -51.93 -0.33 -0.03 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -33.03 371.38 -8.48 -41.52 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.18 Total: 2.54 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.74 Total: -14.64 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.42 Total: -33.94 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.25 Total: -14.44 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.03 -8.48 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452717006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.491 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds