Wall clock time and date at job start Tue Mar 31 2020 14:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.36000 * 117.00256 * 2 1 4 4 C 1.38720 * 119.97134 * 0.29960 * 3 2 1 5 5 C 1.38091 * 120.02119 * 180.26018 * 4 3 2 6 6 C 1.38927 * 119.97426 * 359.43968 * 5 4 3 7 7 S 1.76196 * 120.02510 * 180.30536 * 6 5 4 8 8 C 1.81394 * 103.00153 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47409 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99866 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00000 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99859 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47201 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47061 * 299.99555 * 13 12 11 15 15 C 1.52998 * 109.47153 * 59.99918 * 13 12 11 16 16 C 1.50703 * 109.47342 * 179.97438 * 13 12 11 17 17 H 1.08004 * 119.99538 * 0.02562 * 16 13 12 18 18 C 1.37869 * 120.00365 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00099 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 120.00282 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47048 * 59.99653 * 20 18 16 22 22 H 1.48503 * 109.47195 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46881 * 299.99843 * 20 18 16 24 24 C 1.38917 * 119.94815 * 0.28245 * 6 5 4 25 25 C 1.38090 * 119.97897 * 0.02562 * 24 6 5 26 26 H 1.09003 * 109.46716 * 300.00210 * 1 2 3 27 27 H 1.09000 * 109.46641 * 59.99860 * 1 2 3 28 28 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.07995 * 119.99569 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.01544 * 179.72365 * 5 4 3 31 31 H 1.08996 * 109.47418 * 300.00099 * 8 7 6 32 32 H 1.09004 * 109.47318 * 59.99869 * 8 7 6 33 33 H 0.96995 * 120.00144 * 359.97438 * 11 9 8 34 34 H 1.09006 * 109.47256 * 299.99333 * 12 11 9 35 35 H 1.09005 * 109.47609 * 59.99330 * 12 11 9 36 36 H 1.08998 * 109.46593 * 60.00146 * 14 13 12 37 37 H 1.09005 * 109.47025 * 180.02562 * 14 13 12 38 38 H 1.08996 * 109.46719 * 299.99868 * 14 13 12 39 39 H 1.08991 * 109.47424 * 59.99938 * 15 13 12 40 40 H 1.09005 * 109.46602 * 180.02562 * 15 13 12 41 41 H 1.09002 * 109.46978 * 299.99553 * 15 13 12 42 42 H 0.97001 * 120.00629 * 180.02562 * 19 18 16 43 43 H 1.08007 * 120.00903 * 180.02562 * 24 6 5 44 44 H 1.07993 * 119.98626 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2905 2.3748 0.0063 5 6 1.9164 3.6057 0.0009 6 6 3.3037 3.6790 0.0009 7 16 4.1037 5.2489 0.0021 8 6 5.8637 4.8100 0.0009 9 6 6.6950 6.0671 0.0012 10 8 6.1533 7.1522 0.0025 11 7 8.0402 5.9854 -0.0001 12 6 8.8482 7.2074 0.0007 13 6 10.3327 6.8373 -0.0004 14 6 10.6537 6.0129 1.2479 15 6 10.6524 6.0153 -1.2506 16 6 11.1640 8.0943 -0.0002 17 1 10.6815 9.0607 0.0010 18 6 12.5401 8.0109 -0.0006 19 7 13.1276 6.8342 -0.0006 20 14 13.5704 9.5691 0.0004 21 1 13.2597 10.3672 1.2135 22 1 15.0114 9.2098 0.0004 23 1 13.2593 10.3690 -1.2115 24 6 4.0597 2.5136 0.0004 25 6 3.4317 1.2837 -0.0006 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2121 2.3177 0.0116 30 1 1.3276 4.5112 0.0012 31 1 6.0924 4.2227 0.8901 32 1 6.0916 4.2244 -0.8898 33 1 8.4734 5.1176 -0.0008 34 1 8.6193 7.7950 -0.8885 35 1 8.6207 7.7929 0.8915 36 1 10.0525 5.1037 1.2473 37 1 11.7115 5.7495 1.2473 38 1 10.4260 6.5986 2.1385 39 1 10.4238 6.6026 -2.1399 40 1 11.7100 5.7513 -1.2511 41 1 10.0513 5.1060 -1.2512 42 1 14.0958 6.7754 -0.0005 43 1 5.1384 2.5694 0.0008 44 1 4.0194 0.3776 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457991035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:16 Heat of formation + Delta-G solvation = -69.574584 kcal Electronic energy + Delta-G solvation = -23826.660760 eV Core-core repulsion = 20255.876306 eV Total energy + Delta-G solvation = -3570.784454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.98939 -40.77012 -38.31474 -38.14215 -35.05247 -33.00575 -32.28568 -31.49245 -30.59833 -28.13694 -27.55084 -27.41224 -26.45065 -23.84742 -23.17932 -21.80583 -20.63195 -19.40075 -18.66039 -18.11551 -17.60295 -17.27094 -16.81150 -16.78358 -16.62011 -16.39154 -15.54197 -15.48596 -15.02241 -14.80038 -14.76585 -14.67686 -14.37295 -14.06053 -13.98968 -13.58997 -13.15654 -13.11993 -13.07600 -12.72243 -12.66524 -12.60389 -12.24569 -12.22229 -12.13185 -11.91468 -11.47944 -11.31648 -11.15274 -11.00416 -10.69893 -10.39346 -10.13792 -10.06797 -9.97290 -8.21355 -8.01937 -6.17368 0.23565 0.30029 0.31565 1.41108 1.44236 1.45770 1.51974 1.54439 2.25602 2.39016 2.49057 2.65073 3.21771 3.69757 3.78146 3.86339 3.98551 4.16127 4.23053 4.33432 4.42102 4.42524 4.47193 4.51422 4.56238 4.72255 4.75732 4.96441 4.99580 5.05181 5.06700 5.10686 5.20499 5.26789 5.28886 5.34106 5.55959 5.62870 5.68033 5.68350 6.16726 6.22228 6.41117 6.43994 6.55111 6.86425 7.20217 7.50201 8.96575 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.035375 B = 0.002016 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.321652 B =13885.233158 C =14474.882530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.111 3.889 4 C -0.188 4.188 5 C -0.069 4.069 6 C -0.142 4.142 7 S -0.083 6.083 8 C -0.135 4.135 9 C 0.522 3.478 10 O -0.576 6.576 11 N -0.702 5.702 12 C 0.149 3.851 13 C 0.050 3.950 14 C -0.122 4.122 15 C -0.121 4.121 16 C -0.529 4.529 17 H 0.044 0.956 18 C 0.029 3.971 19 N -0.898 5.898 20 Si 0.943 3.057 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.278 1.278 24 C -0.099 4.099 25 C -0.141 4.141 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.156 0.844 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.413 0.587 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.260 0.740 43 H 0.148 0.852 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.469 -16.176 0.000 27.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.063 3.937 4 C -0.208 4.208 5 C -0.093 4.093 6 C -0.255 4.255 7 S 0.159 5.841 8 C -0.286 4.286 9 C 0.307 3.693 10 O -0.456 6.456 11 N -0.354 5.354 12 C 0.025 3.975 13 C 0.049 3.951 14 C -0.179 4.179 15 C -0.179 4.179 16 C -0.567 4.567 17 H 0.062 0.938 18 C -0.171 4.171 19 N -0.536 5.536 20 Si 0.770 3.230 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.203 1.203 24 C -0.122 4.122 25 C -0.161 4.161 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.173 0.827 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.250 0.750 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.165 0.835 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.935 -14.496 0.003 27.132 hybrid contribution 1.372 -0.325 -0.001 1.410 sum -21.562 -14.821 0.003 26.165 Atomic orbital electron populations 1.23358 0.76459 1.05623 1.02319 1.86080 1.23462 1.26572 1.88662 1.19218 0.92680 0.84737 0.97047 1.21388 1.01274 0.91106 1.07007 1.20729 0.92073 0.98354 0.98097 1.21962 0.97517 0.96920 1.09070 1.86376 0.99631 1.05210 1.92892 1.23765 0.94791 0.99778 1.10269 1.20127 0.82941 0.90109 0.76091 1.90716 1.72393 1.30993 1.51488 1.45989 1.05056 1.11114 1.73249 1.21307 0.91588 0.85461 0.99152 1.18376 0.88418 0.94628 0.93637 1.21681 1.02401 0.97182 0.96673 1.21678 1.02386 0.97182 0.96678 1.21236 0.91682 0.92514 1.51296 0.93795 1.25431 0.98665 0.98286 0.94763 1.69890 1.09658 1.23499 1.50596 0.85849 0.77915 0.80839 0.78386 1.20349 1.20841 1.20333 1.21256 1.00530 0.90577 0.99865 1.20570 0.91880 0.98707 1.04928 0.91657 0.91657 0.86368 0.82690 0.84447 0.83897 0.83903 0.74964 0.94164 0.94174 0.94103 0.91914 0.96348 0.96335 0.91932 0.94112 0.93028 0.83463 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.33 10.50 -93.55 -0.98 -6.31 16 3 C 0.11 1.94 6.69 22.50 0.15 2.09 16 4 C -0.19 -2.96 9.03 22.35 0.20 -2.76 16 5 C -0.07 -1.29 9.79 22.40 0.22 -1.07 16 6 C -0.14 -2.96 6.11 22.60 0.14 -2.82 16 7 S -0.08 -2.10 21.06 -56.49 -1.19 -3.29 16 8 C -0.14 -2.92 4.81 71.24 0.34 -2.57 16 9 C 0.52 16.50 7.85 87.66 0.69 17.19 16 10 O -0.58 -23.52 15.86 -3.04 -0.05 -23.57 16 11 N -0.70 -22.41 4.96 -463.06 -2.30 -24.71 16 12 C 0.15 6.11 4.50 86.38 0.39 6.50 16 13 C 0.05 2.25 0.50 -52.93 -0.03 2.22 16 14 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 15 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 16 C -0.53 -27.55 8.01 25.60 0.21 -27.34 16 17 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 18 C 0.03 1.48 5.15 84.65 0.44 1.92 16 19 N -0.90 -47.17 9.35 21.44 0.20 -46.96 16 20 Si 0.94 42.30 29.54 68.60 2.03 44.33 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 C -0.10 -1.76 9.36 22.40 0.21 -1.55 16 25 C -0.14 -2.44 9.98 22.35 0.22 -2.22 16 26 H 0.06 0.39 7.65 -2.39 -0.02 0.37 16 27 H 0.06 0.39 7.67 -2.39 -0.02 0.37 16 28 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.16 1.57 6.29 -2.91 -0.02 1.56 16 30 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 31 H 0.14 2.30 7.74 -2.39 -0.02 2.28 16 32 H 0.14 2.30 7.75 -2.39 -0.02 2.28 16 33 H 0.41 10.90 6.16 -92.71 -0.57 10.33 16 34 H 0.04 1.77 8.14 -2.38 -0.02 1.76 16 35 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 37 H 0.06 3.01 6.07 -2.38 -0.01 3.00 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 3.00 6.07 -2.38 -0.01 2.99 16 41 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 42 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 43 H 0.15 2.00 5.87 -2.91 -0.02 1.98 16 44 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -65.14 368.21 3.60 -61.54 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.44 Total: 17.39 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 5.45 Total: -18.41 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -2.10 Total: -71.67 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.03 Total: -29.88 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -1.19 Total: -3.29 kcal Total: -65.14 3.60 -61.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457991035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.038 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds