Wall clock time and date at job start Tue Mar 31 2020 14:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99960 * 2 1 4 4 C 1.38483 * 120.08113 * 359.97438 * 3 2 1 5 5 C 1.38309 * 120.02498 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.18598 * 359.97438 * 5 4 3 7 7 C 1.38198 * 120.16856 * 0.02562 * 6 5 4 8 8 C 1.38797 * 119.97437 * 359.69844 * 7 6 5 9 9 S 1.76198 * 120.09536 * 180.28120 * 8 7 6 10 10 C 1.81397 * 103.00185 * 0.29118 * 9 8 7 11 11 C 1.50699 * 109.46967 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00581 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99606 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99885 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.46973 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.47462 * 300.00028 * 15 14 13 17 17 C 1.52998 * 109.47214 * 60.00758 * 15 14 13 18 18 C 1.50711 * 109.46779 * 179.97438 * 15 14 13 19 19 H 1.07993 * 119.99860 * 0.02562 * 18 15 14 20 20 C 1.37880 * 119.99445 * 180.02562 * 18 15 14 21 21 N 1.31513 * 120.00584 * 0.02562 * 20 18 15 22 22 Si 1.86806 * 119.99468 * 180.02562 * 20 18 15 23 23 H 1.48507 * 109.46692 * 60.00297 * 22 20 18 24 24 H 1.48503 * 109.47022 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47084 * 300.00201 * 22 20 18 26 26 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 27 27 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00203 * 1 2 3 29 29 H 1.08005 * 119.98852 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.90467 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.91062 * 180.02562 * 6 5 4 32 32 H 1.08003 * 120.01637 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47504 * 300.00456 * 10 9 8 34 34 H 1.09007 * 109.46906 * 60.00543 * 10 9 8 35 35 H 0.97001 * 119.99861 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47228 * 300.00269 * 14 13 11 37 37 H 1.09007 * 109.46739 * 60.00084 * 14 13 11 38 38 H 1.08998 * 109.47370 * 60.00532 * 16 15 14 39 39 H 1.09007 * 109.46970 * 179.97438 * 16 15 14 40 40 H 1.09005 * 109.47545 * 299.99801 * 16 15 14 41 41 H 1.08999 * 109.47686 * 59.99187 * 17 15 14 42 42 H 1.08998 * 109.47618 * 179.97438 * 17 15 14 43 43 H 1.09004 * 109.46584 * 299.99330 * 17 15 14 44 44 H 0.96992 * 120.00060 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2939 2.3743 -0.0005 5 6 1.9230 3.6061 -0.0011 6 6 3.3036 3.6816 -0.0005 7 6 4.0623 2.5265 0.0000 8 6 3.4381 1.2868 0.0063 9 16 4.4024 -0.1879 0.0145 10 6 6.1050 0.4378 0.0208 11 6 7.0665 -0.7226 0.0288 12 8 6.6448 -1.8596 0.0297 13 7 8.3953 -0.4966 0.0351 14 6 9.3301 -1.6246 0.0423 15 6 10.7661 -1.0968 0.0477 16 6 11.0019 -0.2470 -1.2024 17 6 10.9901 -0.2409 1.2960 18 6 11.7277 -2.2572 0.0558 19 1 11.3521 -3.2697 0.0565 20 6 13.0869 -2.0260 0.0623 21 7 13.5443 -0.7930 0.0619 22 14 14.2789 -3.4644 0.0716 23 1 14.0619 -4.2948 -1.1404 24 1 15.6727 -2.9521 0.0782 25 1 14.0495 -4.2895 1.2846 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2153 2.3191 -0.0005 30 1 1.3342 4.5114 -0.0019 31 1 3.7903 4.6457 -0.0005 32 1 5.1406 2.5883 0.0000 33 1 6.2730 1.0432 -0.8698 34 1 6.2647 1.0476 0.9101 35 1 8.7326 0.4129 0.0348 36 1 9.1618 -2.2303 0.9327 37 1 9.1707 -2.2342 -0.8472 38 1 10.3065 0.5923 -1.2078 39 1 12.0249 0.1294 -1.1983 40 1 10.8424 -0.8568 -2.0918 41 1 10.8221 -0.8463 2.1867 42 1 12.0133 0.1347 1.3002 43 1 10.2946 0.5984 1.2906 44 1 14.5005 -0.6304 0.0661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457992379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:20 Heat of formation + Delta-G solvation = -49.842731 kcal Electronic energy + Delta-G solvation = -24134.031731 eV Core-core repulsion = 20564.102915 eV Total energy + Delta-G solvation = -3569.928817 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.27579 -39.30619 -37.60670 -36.41241 -33.37453 -31.74920 -31.11133 -30.45944 -29.56993 -27.54927 -25.76257 -25.56743 -24.69475 -23.15558 -22.39811 -20.41349 -18.92944 -18.68753 -17.35408 -16.83451 -16.36146 -16.04234 -15.77321 -15.63499 -15.46748 -15.03033 -14.68255 -14.34931 -13.97083 -13.74488 -13.60785 -13.11464 -13.02659 -12.91833 -12.35920 -12.35230 -12.21339 -12.04118 -11.42471 -11.39877 -11.29282 -11.21098 -10.86652 -10.74477 -10.41868 -10.22956 -10.11987 -9.95854 -9.71733 -9.67204 -9.32271 -8.82916 -8.76451 -8.51950 -8.36261 -7.29830 -6.04135 -4.14320 0.91080 1.12948 1.29164 2.37806 2.87713 2.99418 3.29484 3.33688 3.37132 3.40217 3.62936 4.38668 4.47899 4.57881 4.78289 4.84390 4.90801 4.91192 4.94670 5.00784 5.18356 5.19431 5.22697 5.25498 5.46606 5.83603 5.97194 6.17155 6.19391 6.28589 6.41525 6.46503 6.72190 6.78105 6.88181 6.94525 6.98213 7.05282 7.31405 7.52177 7.66993 7.92030 7.97809 8.10663 8.35028 8.55221 8.86011 9.51621 10.97288 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.030662 B = 0.002237 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.967072 B =12515.753256 C =13227.047934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.143 3.857 4 C -0.192 4.192 5 C -0.091 4.091 6 C -0.136 4.136 7 C -0.101 4.101 8 C -0.133 4.133 9 S -0.004 6.004 10 C -0.160 4.160 11 C 0.523 3.477 12 O -0.532 6.532 13 N -0.710 5.710 14 C 0.132 3.868 15 C 0.056 3.944 16 C -0.131 4.131 17 C -0.132 4.132 18 C -0.507 4.507 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.399 0.601 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.006 0.994 39 H 0.086 0.914 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.086 0.914 43 H 0.006 0.994 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.794 11.011 -0.130 25.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.092 3.908 4 C -0.212 4.212 5 C -0.112 4.112 6 C -0.156 4.156 7 C -0.126 4.126 8 C -0.247 4.247 9 S 0.240 5.760 10 C -0.312 4.312 11 C 0.306 3.694 12 O -0.410 6.410 13 N -0.361 5.361 14 C 0.010 3.990 15 C 0.056 3.944 16 C -0.189 4.189 17 C -0.189 4.189 18 C -0.545 4.545 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.234 0.766 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.105 0.895 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.105 0.895 43 H 0.025 0.975 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.037 8.824 -0.126 24.670 hybrid contribution 0.999 1.384 0.002 1.706 sum -22.038 10.208 -0.124 24.288 Atomic orbital electron populations 1.23084 0.78296 1.04201 1.01188 1.86188 1.21289 1.26160 1.88284 1.18335 0.90154 0.84843 0.97459 1.21147 0.99889 0.92017 1.08184 1.20943 0.94637 0.96914 0.98730 1.20983 0.93892 0.98073 1.02615 1.21065 0.99931 0.90796 1.00787 1.21477 0.94281 0.99083 1.09809 1.86508 0.95048 1.02968 1.91432 1.23927 0.97193 1.02630 1.07416 1.19459 0.83239 0.89027 0.77683 1.90727 1.77593 1.22864 1.49804 1.46221 1.04888 1.11793 1.73216 1.21788 0.89512 0.86948 1.00760 1.18359 0.88387 0.94836 0.92864 1.21840 1.02566 0.96909 0.97601 1.21842 1.02563 0.96903 0.97617 1.20939 0.90524 0.92029 1.51035 0.92439 1.24879 0.98186 0.95689 0.94742 1.69785 1.13612 1.18615 1.50467 0.86622 0.79849 0.82610 0.78718 1.20252 1.21328 1.20259 0.92641 0.88013 0.92647 0.85126 0.85656 0.85545 0.85178 0.86830 0.86833 0.76556 0.92468 0.92475 0.97531 0.89544 0.95362 0.95370 0.89527 0.97537 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.58 9.87 -19.77 -0.20 -3.77 16 3 C 0.14 1.67 6.69 -39.07 -0.26 1.41 16 4 C -0.19 -1.73 9.04 -39.47 -0.36 -2.09 16 5 C -0.09 -0.74 10.04 -39.54 -0.40 -1.14 16 6 C -0.14 -1.18 10.04 -39.59 -0.40 -1.58 16 7 C -0.10 -1.04 9.36 -39.39 -0.37 -1.41 16 8 C -0.13 -1.65 6.12 -38.96 -0.24 -1.89 16 9 S 0.00 -0.05 20.54 -107.50 -2.21 -2.26 16 10 C -0.16 -2.03 4.82 36.00 0.17 -1.86 16 11 C 0.52 8.91 7.85 -10.98 -0.09 8.83 16 12 O -0.53 -11.19 15.86 5.56 0.09 -11.10 16 13 N -0.71 -12.20 4.96 -60.29 -0.30 -12.50 16 14 C 0.13 2.76 4.50 -4.04 -0.02 2.74 16 15 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 16 C -0.13 -2.90 8.08 37.15 0.30 -2.60 16 17 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 18 C -0.51 -13.14 8.01 -34.43 -0.28 -13.41 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.89 -23.37 9.35 55.43 0.52 -22.85 16 22 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 27 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 29 H 0.13 0.84 6.30 -52.48 -0.33 0.51 16 30 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.13 1.13 5.88 -52.48 -0.31 0.82 16 33 H 0.11 1.18 7.74 -51.92 -0.40 0.78 16 34 H 0.11 1.18 7.76 -51.92 -0.40 0.78 16 35 H 0.40 6.02 6.16 -40.82 -0.25 5.77 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 39 H 0.09 2.12 6.07 -51.92 -0.32 1.80 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 43 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 44 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -30.57 367.44 -8.72 -39.29 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.33 Total: 3.64 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -0.80 Total: -11.58 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.22 Total: -35.35 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.11 Total: -14.88 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.21 Total: -2.26 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.57 -8.72 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.549 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds