Wall clock time and date at job start Tue Mar 31 2020 14:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99960 * 2 1 4 4 C 1.38483 * 120.08113 * 359.97438 * 3 2 1 5 5 C 1.38309 * 120.02498 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.18598 * 359.97438 * 5 4 3 7 7 C 1.38198 * 120.16856 * 0.02562 * 6 5 4 8 8 C 1.38797 * 119.97437 * 359.69844 * 7 6 5 9 9 S 1.76198 * 120.09536 * 180.28120 * 8 7 6 10 10 C 1.81397 * 103.00185 * 0.29118 * 9 8 7 11 11 C 1.50699 * 109.46967 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00581 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99606 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99885 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.46973 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.47462 * 300.00028 * 15 14 13 17 17 C 1.52998 * 109.47214 * 60.00758 * 15 14 13 18 18 C 1.50711 * 109.46779 * 179.97438 * 15 14 13 19 19 H 1.07993 * 119.99860 * 0.02562 * 18 15 14 20 20 C 1.37880 * 119.99445 * 180.02562 * 18 15 14 21 21 N 1.31513 * 120.00584 * 0.02562 * 20 18 15 22 22 Si 1.86806 * 119.99468 * 180.02562 * 20 18 15 23 23 H 1.48507 * 109.46692 * 60.00297 * 22 20 18 24 24 H 1.48503 * 109.47022 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47084 * 300.00201 * 22 20 18 26 26 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 27 27 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00203 * 1 2 3 29 29 H 1.08005 * 119.98852 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.90467 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.91062 * 180.02562 * 6 5 4 32 32 H 1.08003 * 120.01637 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47504 * 300.00456 * 10 9 8 34 34 H 1.09007 * 109.46906 * 60.00543 * 10 9 8 35 35 H 0.97001 * 119.99861 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47228 * 300.00269 * 14 13 11 37 37 H 1.09007 * 109.46739 * 60.00084 * 14 13 11 38 38 H 1.08998 * 109.47370 * 60.00532 * 16 15 14 39 39 H 1.09007 * 109.46970 * 179.97438 * 16 15 14 40 40 H 1.09005 * 109.47545 * 299.99801 * 16 15 14 41 41 H 1.08999 * 109.47686 * 59.99187 * 17 15 14 42 42 H 1.08998 * 109.47618 * 179.97438 * 17 15 14 43 43 H 1.09004 * 109.46584 * 299.99330 * 17 15 14 44 44 H 0.96992 * 120.00060 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2939 2.3743 -0.0005 5 6 1.9230 3.6061 -0.0011 6 6 3.3036 3.6816 -0.0005 7 6 4.0623 2.5265 0.0000 8 6 3.4381 1.2868 0.0063 9 16 4.4024 -0.1879 0.0145 10 6 6.1050 0.4378 0.0208 11 6 7.0665 -0.7226 0.0288 12 8 6.6448 -1.8596 0.0297 13 7 8.3953 -0.4966 0.0351 14 6 9.3301 -1.6246 0.0423 15 6 10.7661 -1.0968 0.0477 16 6 11.0019 -0.2470 -1.2024 17 6 10.9901 -0.2409 1.2960 18 6 11.7277 -2.2572 0.0558 19 1 11.3521 -3.2697 0.0565 20 6 13.0869 -2.0260 0.0623 21 7 13.5443 -0.7930 0.0619 22 14 14.2789 -3.4644 0.0716 23 1 14.0619 -4.2948 -1.1404 24 1 15.6727 -2.9521 0.0782 25 1 14.0495 -4.2895 1.2846 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2153 2.3191 -0.0005 30 1 1.3342 4.5114 -0.0019 31 1 3.7903 4.6457 -0.0005 32 1 5.1406 2.5883 0.0000 33 1 6.2730 1.0432 -0.8698 34 1 6.2647 1.0476 0.9101 35 1 8.7326 0.4129 0.0348 36 1 9.1618 -2.2303 0.9327 37 1 9.1707 -2.2342 -0.8472 38 1 10.3065 0.5923 -1.2078 39 1 12.0249 0.1294 -1.1983 40 1 10.8424 -0.8568 -2.0918 41 1 10.8221 -0.8463 2.1867 42 1 12.0133 0.1347 1.3002 43 1 10.2946 0.5984 1.2906 44 1 14.5005 -0.6304 0.0661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457992379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:19 Heat of formation + Delta-G solvation = -67.628341 kcal Electronic energy + Delta-G solvation = -24134.802973 eV Core-core repulsion = 20564.102915 eV Total energy + Delta-G solvation = -3570.700059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98234 -40.76491 -38.29917 -38.14760 -35.05789 -33.01811 -32.31893 -31.25775 -30.67528 -28.13397 -27.55410 -27.41164 -26.43350 -23.86247 -23.12660 -21.80211 -20.63727 -19.59563 -18.41455 -18.02301 -17.60386 -17.09643 -16.86421 -16.83106 -16.63483 -16.40913 -15.96702 -15.24005 -15.04342 -15.01549 -14.71430 -14.56419 -14.21572 -14.02160 -13.91755 -13.57949 -13.15945 -13.09061 -12.94864 -12.67042 -12.66855 -12.62718 -12.24554 -12.13764 -12.02627 -11.95597 -11.48367 -11.31359 -11.05417 -11.00493 -10.73082 -10.70309 -10.39588 -10.00945 -9.47173 -8.27381 -8.02349 -6.17790 0.20747 0.30618 0.43077 1.44038 1.45273 1.45417 1.51784 1.53926 2.25246 2.37927 2.48699 2.71813 3.21312 3.70075 3.84380 3.97880 3.99879 4.16184 4.25594 4.39150 4.39334 4.40279 4.43529 4.50773 4.57278 4.71775 4.72767 4.82754 4.99040 5.06304 5.10558 5.17242 5.20093 5.33647 5.34152 5.53305 5.55505 5.67658 5.67998 5.79980 6.16346 6.21763 6.39163 6.43684 6.54823 6.85923 7.20132 7.49748 8.96258 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.030662 B = 0.002237 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.967072 B =12515.753256 C =13227.047934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.123 3.877 4 C -0.194 4.194 5 C -0.086 4.086 6 C -0.139 4.139 7 C -0.107 4.107 8 C -0.151 4.151 9 S -0.076 6.076 10 C -0.138 4.138 11 C 0.522 3.478 12 O -0.576 6.576 13 N -0.701 5.701 14 C 0.148 3.852 15 C 0.052 3.948 16 C -0.122 4.122 17 C -0.122 4.122 18 C -0.530 4.530 19 H 0.043 0.957 20 C 0.029 3.971 21 N -0.898 5.898 22 Si 0.943 3.057 23 H -0.278 1.278 24 H -0.282 1.282 25 H -0.278 1.278 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.413 0.587 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.166 13.807 -0.142 27.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.072 3.928 4 C -0.214 4.214 5 C -0.106 4.106 6 C -0.159 4.159 7 C -0.131 4.131 8 C -0.265 4.265 9 S 0.167 5.833 10 C -0.289 4.289 11 C 0.308 3.692 12 O -0.456 6.456 13 N -0.353 5.353 14 C 0.024 3.976 15 C 0.051 3.949 16 C -0.180 4.180 17 C -0.180 4.180 18 C -0.568 4.568 19 H 0.062 0.938 20 C -0.171 4.171 21 N -0.536 5.536 22 Si 0.770 3.230 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.203 1.203 26 H 0.088 0.912 27 H 0.129 0.871 28 H 0.087 0.913 29 H 0.172 0.828 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.251 0.749 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.425 11.669 -0.138 27.070 hybrid contribution 1.300 0.574 0.005 1.421 sum -23.126 12.243 -0.133 26.167 Atomic orbital electron populations 1.23346 0.76283 1.05391 1.02497 1.86151 1.23587 1.26893 1.88495 1.18675 0.90327 0.85678 0.98102 1.21477 1.01095 0.91479 1.07396 1.21408 0.94911 0.97699 0.96588 1.21366 0.94285 0.98599 1.01618 1.21347 1.00948 0.90486 1.00311 1.21467 0.94351 0.98208 1.12436 1.86709 0.97409 1.06592 1.92619 1.23767 0.94340 1.00636 1.10122 1.20117 0.83341 0.89692 0.76089 1.90715 1.78285 1.25187 1.51440 1.45982 1.04693 1.11380 1.73291 1.21316 0.89415 0.87719 0.99106 1.18355 0.88673 0.94224 0.93629 1.21686 1.02009 0.97625 0.96669 1.21688 1.02003 0.97618 0.96688 1.21245 0.91668 0.92570 1.51364 0.93844 1.25431 0.99357 0.97591 0.94720 1.69886 1.13693 1.19489 1.50573 0.85848 0.78397 0.80347 0.78393 1.20335 1.20768 1.20347 0.91248 0.87079 0.91264 0.82779 0.82486 0.82869 0.83763 0.83959 0.83967 0.74942 0.94229 0.94233 0.94086 0.91860 0.96347 0.96360 0.91843 0.94092 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.90 9.87 -93.65 -0.92 -8.82 16 3 C 0.12 2.75 6.69 22.60 0.15 2.90 16 4 C -0.19 -3.02 9.04 22.35 0.20 -2.82 16 5 C -0.09 -1.08 10.04 22.29 0.22 -0.85 16 6 C -0.14 -1.91 10.04 22.27 0.22 -1.69 16 7 C -0.11 -1.93 9.36 22.39 0.21 -1.72 16 8 C -0.15 -3.62 6.12 22.68 0.14 -3.48 16 9 S -0.08 -2.22 20.54 -56.49 -1.16 -3.38 16 10 C -0.14 -3.25 4.82 71.24 0.34 -2.91 16 11 C 0.52 17.41 7.85 87.66 0.69 18.10 16 12 O -0.58 -24.72 15.86 -3.01 -0.05 -24.76 16 13 N -0.70 -23.15 4.96 -463.06 -2.30 -25.44 16 14 C 0.15 6.23 4.50 86.38 0.39 6.62 16 15 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 16 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 17 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 18 C -0.53 -27.89 8.01 25.60 0.21 -27.69 16 19 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 20 C 0.03 1.52 5.15 84.66 0.44 1.95 16 21 N -0.90 -47.40 9.35 21.45 0.20 -47.20 16 22 Si 0.94 42.57 29.54 68.60 2.03 44.60 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 27 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 29 H 0.15 1.53 6.30 -2.91 -0.02 1.51 16 30 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 31 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.14 2.02 5.88 -2.91 -0.02 2.01 16 33 H 0.14 2.53 7.74 -2.39 -0.02 2.51 16 34 H 0.14 2.53 7.76 -2.39 -0.02 2.51 16 35 H 0.41 11.25 6.16 -92.71 -0.57 10.67 16 36 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 39 H 0.06 3.06 6.07 -2.38 -0.01 3.04 16 40 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 43 H 0.04 1.44 6.86 -2.38 -0.02 1.42 16 44 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 Total: -1.00 -68.73 367.44 3.70 -65.03 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.44 Total: 17.30 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 5.46 Total: -17.31 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -2.10 Total: -72.64 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.97 Total: -33.59 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -1.16 Total: -3.38 kcal Total: -68.73 3.70 -65.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.600 kcal (2) G-P(sol) polarization free energy of solvation -68.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds