Wall clock time and date at job start Tue Mar 31 2020 14:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38830 * 120.01822 * 359.72528 * 3 2 1 5 5 C 1.38186 * 120.10144 * 179.74334 * 4 3 2 6 6 C 1.38135 * 120.13524 * 0.55546 * 5 4 3 7 7 C 1.38986 * 120.03026 * 359.69907 * 6 5 4 8 8 S 1.76200 * 120.05156 * 180.02562 * 7 6 5 9 9 C 1.81391 * 103.00202 * 0.02562 * 8 7 6 10 10 C 1.50697 * 109.47386 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00209 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00260 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99974 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47081 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46904 * 299.99843 * 14 13 12 16 16 C 1.53003 * 109.47240 * 60.00005 * 14 13 12 17 17 C 1.50697 * 109.47363 * 179.97438 * 14 13 12 18 18 H 1.08001 * 120.00028 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00311 * 179.97438 * 17 14 13 20 20 N 1.31512 * 119.99921 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00205 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.47062 * 59.99821 * 21 19 17 23 23 H 1.48495 * 109.47183 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47270 * 300.00320 * 21 19 17 25 25 C 1.38555 * 120.00986 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47043 * 300.00197 * 1 2 3 27 27 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 28 28 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.07996 * 119.94641 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.93480 * 180.27294 * 5 4 3 31 31 H 1.07999 * 119.98122 * 179.71931 * 6 5 4 32 32 H 1.09005 * 109.47025 * 299.99797 * 9 8 7 33 33 H 1.08999 * 109.47365 * 60.00037 * 9 8 7 34 34 H 0.96999 * 119.99619 * 359.97438 * 12 10 9 35 35 H 1.09004 * 109.47282 * 299.99493 * 13 12 10 36 36 H 1.08997 * 109.47456 * 60.00259 * 13 12 10 37 37 H 1.08998 * 109.47005 * 60.00135 * 15 14 13 38 38 H 1.08995 * 109.47203 * 180.02562 * 15 14 13 39 39 H 1.08999 * 109.47045 * 300.00276 * 15 14 13 40 40 H 1.08997 * 109.47205 * 59.99949 * 16 14 13 41 41 H 1.08995 * 109.47058 * 180.02562 * 16 14 13 42 42 H 1.08998 * 109.46647 * 299.99845 * 16 14 13 43 43 H 0.97001 * 120.00382 * 180.02562 * 20 19 17 44 44 H 1.07993 * 120.07055 * 359.96230 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2901 2.3755 -0.0058 5 6 1.9156 3.6077 -0.0004 6 6 3.2947 3.6854 -0.0009 7 6 4.0569 2.5231 -0.0005 8 16 5.8161 2.6215 -0.0004 9 6 6.1248 4.4090 -0.0002 10 6 7.6104 4.6622 -0.0008 11 8 8.3847 3.7287 -0.0008 12 7 8.0786 5.9261 -0.0013 13 6 9.5227 6.1722 -0.0013 14 6 9.7831 7.6799 -0.0012 15 6 9.1592 8.3052 -1.2505 16 6 9.1592 8.3053 1.2480 17 6 11.2687 7.9332 -0.0006 18 1 11.9582 7.1019 -0.0006 19 6 11.7477 9.2261 -0.0010 20 7 10.9081 10.2383 -0.0024 21 14 13.5891 9.5400 -0.0009 22 1 14.1948 8.9326 -1.2131 23 1 13.8418 11.0032 -0.0020 24 1 14.1946 8.9334 1.2118 25 6 3.4296 1.2838 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2117 2.3182 -0.0107 30 1 1.3249 4.5119 -0.0005 31 1 3.7809 4.6497 -0.0013 32 1 5.6804 4.8546 -0.8902 33 1 5.6803 4.8544 0.8898 34 1 7.4593 6.6727 -0.0016 35 1 9.9672 5.7272 0.8890 36 1 9.9673 5.7264 -0.8910 37 1 8.0847 8.1221 -1.2505 38 1 9.3451 9.3792 -1.2508 39 1 9.6037 7.8597 -2.1405 40 1 9.6037 7.8598 2.1380 41 1 9.3443 9.3794 1.2478 42 1 8.0847 8.1221 1.2479 43 1 11.2450 11.1480 -0.0031 44 1 4.0191 0.3790 0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457997629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:22 Heat of formation + Delta-G solvation = -69.593481 kcal Electronic energy + Delta-G solvation = -23839.909599 eV Core-core repulsion = 20269.124325 eV Total energy + Delta-G solvation = -3570.785273 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99893 -40.77973 -38.32235 -38.14674 -35.05811 -32.99155 -32.14017 -31.71033 -30.52376 -28.12336 -27.54822 -27.40981 -26.44715 -23.89642 -23.17046 -21.81385 -20.63412 -19.64992 -18.48074 -17.69414 -17.59085 -17.13543 -16.93136 -16.80017 -16.65625 -16.64358 -16.14444 -15.20904 -15.02817 -14.84334 -14.72276 -14.62552 -14.27989 -14.06240 -13.95453 -13.58820 -13.15722 -13.08632 -13.04089 -12.66586 -12.66436 -12.58491 -12.24180 -12.15515 -12.13263 -12.04965 -11.47827 -11.31714 -11.14197 -11.01073 -10.69885 -10.69066 -10.39185 -10.01033 -9.34530 -8.47274 -8.02018 -6.17289 0.16079 0.21677 0.40197 1.33245 1.44145 1.45767 1.51932 1.53388 2.24442 2.39873 2.48803 2.66881 3.21735 3.68523 3.82946 3.97578 4.08220 4.10365 4.22960 4.27014 4.42150 4.42459 4.47073 4.51389 4.54543 4.72405 4.74595 4.86993 4.99651 5.06910 5.10783 5.17796 5.20709 5.29073 5.33901 5.41328 5.55859 5.64252 5.68166 5.68625 6.17072 6.22358 6.41736 6.44146 6.54431 6.86426 7.19612 7.50217 8.96498 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.040404 B = 0.002003 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.826567 B =13973.131367 C =14464.284909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.135 3.865 4 C -0.214 4.214 5 C -0.057 4.057 6 C -0.180 4.180 7 C -0.065 4.065 8 S -0.076 6.076 9 C -0.135 4.135 10 C 0.522 3.478 11 O -0.576 6.576 12 N -0.701 5.701 13 C 0.149 3.851 14 C 0.050 3.950 15 C -0.121 4.121 16 C -0.121 4.121 17 C -0.529 4.529 18 H 0.043 0.957 19 C 0.029 3.971 20 N -0.897 5.897 21 Si 0.943 3.057 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.278 1.278 25 C -0.159 4.159 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.156 0.844 30 H 0.160 0.840 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.413 0.587 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.260 0.740 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.231 -11.674 0.003 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.088 3.912 4 C -0.235 4.235 5 C -0.077 4.077 6 C -0.204 4.204 7 C -0.179 4.179 8 S 0.168 5.832 9 C -0.285 4.285 10 C 0.307 3.693 11 O -0.457 6.457 12 N -0.353 5.353 13 C 0.025 3.975 14 C 0.049 3.951 15 C -0.179 4.179 16 C -0.179 4.179 17 C -0.568 4.568 18 H 0.062 0.938 19 C -0.171 4.171 20 N -0.536 5.536 21 Si 0.770 3.230 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.204 1.204 25 C -0.184 4.184 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.135 0.865 29 H 0.174 0.826 30 H 0.178 0.822 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.251 0.749 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.632 -13.120 0.002 27.030 hybrid contribution 0.137 1.552 -0.001 1.558 sum -23.495 -11.569 0.001 26.189 Atomic orbital electron populations 1.23381 0.76062 1.05648 1.02553 1.86058 1.23802 1.26813 1.88530 1.18943 0.91526 0.85240 0.95520 1.21578 1.01391 0.91690 1.08871 1.21244 0.93718 0.98288 0.94406 1.21429 0.95185 0.97072 1.06711 1.21792 0.97234 0.96346 1.02503 1.86540 0.98057 1.06739 1.91836 1.23788 0.96083 0.98072 1.10581 1.20121 0.89936 0.83112 0.76129 1.90724 1.59639 1.43792 1.51503 1.45978 1.08950 1.07174 1.73209 1.21312 0.78952 0.98121 0.99153 1.18377 0.94661 0.88339 0.93679 1.21679 0.96805 1.02802 0.96641 1.21677 0.96804 1.02786 0.96645 1.21236 0.92167 0.92042 1.51311 0.93839 1.25423 1.00817 0.96102 0.94763 1.69887 1.34518 0.98612 1.50583 0.85855 0.81945 0.76858 0.78368 1.20381 1.20810 1.20364 1.19927 0.92317 0.96855 1.09270 0.91357 0.91358 0.86507 0.82640 0.82247 0.83794 0.83606 0.83600 0.74903 0.94182 0.94179 0.94044 0.91902 0.96374 0.96361 0.91917 0.94053 0.93020 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -6.14 10.49 -92.48 -0.97 -7.12 16 3 C 0.13 2.64 6.68 22.49 0.15 2.79 16 4 C -0.21 -3.08 9.04 22.40 0.20 -2.88 16 5 C -0.06 -0.77 10.03 22.23 0.22 -0.55 16 6 C -0.18 -3.07 9.36 22.42 0.21 -2.86 16 7 C -0.07 -1.46 6.11 22.61 0.14 -1.32 16 8 S -0.08 -2.00 21.06 -56.49 -1.19 -3.19 16 9 C -0.13 -2.89 4.82 71.23 0.34 -2.54 16 10 C 0.52 16.48 7.85 87.66 0.69 17.17 16 11 O -0.58 -23.68 15.87 -3.05 -0.05 -23.73 16 12 N -0.70 -22.23 4.96 -463.05 -2.30 -24.52 16 13 C 0.15 6.09 4.50 86.38 0.39 6.48 16 14 C 0.05 2.24 0.50 -52.93 -0.03 2.21 16 15 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 16 C -0.12 -5.16 8.08 71.98 0.58 -4.57 16 17 C -0.53 -27.52 8.01 25.60 0.21 -27.32 16 18 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 19 C 0.03 1.50 5.15 84.65 0.44 1.94 16 20 N -0.90 -46.97 9.35 21.45 0.20 -46.76 16 21 Si 0.94 42.26 29.54 68.60 2.03 44.28 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 C -0.16 -3.66 9.73 22.50 0.22 -3.44 16 26 H 0.07 0.40 7.67 -2.39 -0.02 0.38 16 27 H 0.07 0.40 7.65 -2.39 -0.02 0.38 16 28 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.16 1.29 6.29 -2.91 -0.02 1.28 16 30 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.14 1.83 5.87 -2.91 -0.02 1.81 16 32 H 0.15 2.29 7.75 -2.39 -0.02 2.27 16 33 H 0.15 2.29 7.75 -2.39 -0.02 2.27 16 34 H 0.41 10.74 6.16 -92.71 -0.57 10.17 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 38 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 41 H 0.06 2.99 6.07 -2.39 -0.01 2.98 16 42 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 43 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 44 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -66.36 368.22 3.62 -62.75 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.44 Total: 16.52 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 5.45 Total: -18.23 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -2.10 Total: -71.29 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -1.02 Total: -30.85 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -1.19 Total: -3.19 kcal Total: -66.36 3.62 -62.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457997629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.848 kcal (2) G-P(sol) polarization free energy of solvation -66.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds