Wall clock time and date at job start Tue Mar 31 2020 13:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99835 * 2 1 4 4 N 1.46507 * 109.46899 * 125.00442 * 3 2 1 5 5 C 1.46500 * 119.99537 * 274.27086 * 4 3 2 6 6 C 1.50695 * 109.47645 * 275.00114 * 5 4 3 7 7 H 1.08001 * 119.99608 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00421 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99636 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 120.00178 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47378 * 59.99923 * 10 8 6 12 12 H 1.48503 * 109.47321 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47422 * 300.00030 * 10 8 6 14 14 S 1.65599 * 120.00150 * 94.27415 * 4 3 2 15 15 O 1.42095 * 106.40031 * 331.10942 * 14 4 3 16 16 O 1.42096 * 106.39845 * 198.18761 * 14 4 3 17 17 C 1.76201 * 107.21630 * 84.64895 * 14 4 3 18 18 C 1.38256 * 120.00060 * 345.98624 * 17 14 4 19 19 C 1.38219 * 119.99864 * 179.72467 * 18 17 14 20 20 C 1.38249 * 119.99775 * 0.27684 * 19 18 17 21 21 C 1.38214 * 120.00152 * 359.97438 * 20 19 18 22 22 C 1.38217 * 119.99886 * 166.18409 * 17 14 4 23 23 C 1.50702 * 119.99740 * 0.03743 * 22 17 14 24 24 C 1.53001 * 109.46595 * 124.79128 * 23 22 17 25 25 C 1.53000 * 109.46980 * 244.78776 * 23 22 17 26 26 H 1.08002 * 120.00421 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00004 * 179.97438 * 1 2 3 28 28 H 1.07995 * 119.99774 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47076 * 5.00139 * 3 2 1 30 30 H 1.09000 * 109.47049 * 244.99994 * 3 2 1 31 31 H 1.09005 * 109.47302 * 35.00520 * 5 4 3 32 32 H 1.09001 * 109.46692 * 154.99723 * 5 4 3 33 33 H 0.96994 * 119.99495 * 180.02562 * 9 8 6 34 34 H 1.08001 * 120.00382 * 0.02562 * 18 17 14 35 35 H 1.07997 * 119.99693 * 180.25876 * 19 18 17 36 36 H 1.08005 * 119.99806 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.99606 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.46995 * 4.78928 * 23 22 17 39 39 H 1.08997 * 109.47613 * 60.00178 * 24 23 22 40 40 H 1.09003 * 109.46347 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47114 * 299.99403 * 24 23 22 42 42 H 1.09001 * 109.47309 * 60.00258 * 25 23 22 43 43 H 1.08996 * 109.47425 * 180.02562 * 25 23 22 44 44 H 1.09001 * 109.47096 * 300.00598 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5325 1.7772 2.4486 6 6 2.6178 3.2795 2.5294 7 1 2.9799 3.8460 1.6841 8 6 2.2346 3.9309 3.6826 9 7 1.7950 3.2409 4.7124 10 14 2.3410 5.7931 3.7829 11 1 1.4849 6.3953 2.7294 12 1 1.8744 6.2444 5.1185 13 1 3.7488 6.2201 3.5807 14 16 4.5668 0.8587 0.9213 15 8 4.5613 -0.0970 -0.1301 16 8 5.0800 0.5850 2.2178 17 6 5.4556 2.2559 0.3191 18 6 4.7705 3.3578 -0.1582 19 6 5.4678 4.4560 -0.6253 20 6 6.8502 4.4503 -0.6205 21 6 7.5351 3.3467 -0.1481 22 6 6.8378 2.2486 0.3202 23 6 7.5845 1.0454 0.8356 24 6 8.5505 0.5453 -0.2404 25 6 8.3727 1.4325 2.0885 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.4992 1.4634 2.5970 32 1 3.1608 1.3354 3.2221 33 1 1.5251 3.6992 5.5235 34 1 3.6905 3.3624 -0.1616 35 1 4.9325 5.3184 -0.9943 36 1 7.3950 5.3083 -0.9858 37 1 8.6151 3.3421 -0.1447 38 1 6.8749 0.2557 1.0823 39 1 9.2601 1.3350 -0.4871 40 1 9.0909 -0.3247 0.1327 41 1 7.9890 0.2695 -1.1329 42 1 7.6846 1.7888 2.8551 43 1 8.9132 0.5624 2.4611 44 1 9.0823 2.2223 1.8418 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490096456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:45 Heat of formation + Delta-G solvation = -33.845492 kcal Electronic energy + Delta-G solvation = -26715.465549 eV Core-core repulsion = 23146.230425 eV Total energy + Delta-G solvation = -3569.235124 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.44251 -36.73116 -36.40320 -35.64661 -34.91288 -33.22310 -31.93703 -31.05829 -29.65973 -27.52460 -27.05891 -24.98909 -23.59048 -22.98978 -22.17877 -20.12884 -19.69204 -18.46282 -17.25283 -16.96247 -16.38901 -15.78209 -15.66563 -15.19074 -14.61812 -14.52213 -14.28782 -14.01234 -13.71460 -13.60633 -13.44125 -13.04331 -12.53248 -12.41164 -12.30582 -12.17981 -12.02960 -11.84212 -11.70612 -11.46186 -11.32531 -11.16912 -11.06672 -10.92248 -10.87936 -10.80006 -10.61330 -10.50275 -10.20253 -10.01289 -9.79665 -9.10077 -9.05483 -8.60638 -8.49663 -8.15507 -6.11838 -4.18416 1.02998 1.13820 1.50610 2.61908 3.24956 3.30832 3.31803 3.57962 3.72563 4.21199 4.35824 4.60693 4.75939 5.04837 5.13678 5.14702 5.22091 5.24510 5.33118 5.35305 5.44090 5.46183 5.55893 5.64677 5.68487 5.83055 5.91101 5.95539 6.02624 6.07999 6.13303 6.16485 6.27310 6.35283 6.43862 6.45522 6.52388 6.53410 6.96686 7.04814 7.05749 7.32471 7.40319 7.59811 7.83953 8.12065 8.84086 9.47491 10.96442 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010310 B = 0.006530 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.193939 B = 4286.673154 C = 5515.771126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.151 3.849 4 N -0.980 5.980 5 C 0.245 3.755 6 C -0.544 4.544 7 H 0.063 0.937 8 C 0.068 3.932 9 N -0.888 5.888 10 Si 0.890 3.110 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.275 1.275 14 S 2.688 3.312 15 O -0.976 6.976 16 O -0.951 6.951 17 C -0.656 4.656 18 C -0.014 4.014 19 C -0.146 4.146 20 C -0.074 4.074 21 C -0.139 4.139 22 C 0.020 3.980 23 C -0.081 4.081 24 C -0.145 4.145 25 C -0.140 4.140 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.265 0.735 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.674 -1.075 -11.126 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.181 4.181 3 C 0.025 3.975 4 N -0.819 5.819 5 C 0.123 3.877 6 C -0.584 4.584 7 H 0.081 0.919 8 C -0.136 4.136 9 N -0.525 5.525 10 Si 0.718 3.282 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.201 1.201 14 S 2.777 3.223 15 O -0.966 6.966 16 O -0.941 6.941 17 C -0.741 4.741 18 C -0.033 4.033 19 C -0.164 4.164 20 C -0.092 4.092 21 C -0.158 4.158 22 C 0.018 3.982 23 C -0.100 4.100 24 C -0.202 4.202 25 C -0.197 4.197 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.127 0.873 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.964 -1.846 -10.746 13.503 hybrid contribution -0.002 1.989 0.024 1.989 sum 7.962 0.143 -10.722 13.356 Atomic orbital electron populations 1.23784 0.95752 1.01634 1.01223 1.23428 0.96325 0.99268 0.99087 1.20309 0.93271 0.96008 0.87864 1.57383 1.23988 1.82343 1.18184 1.19290 0.97210 0.94764 0.76410 1.21532 1.44869 0.91931 1.00022 0.91891 1.24905 0.94887 0.98355 0.95442 1.69918 1.42852 1.35734 1.04041 0.86682 0.78606 0.85569 0.77370 1.20129 1.21098 1.20095 1.02164 0.72653 0.73919 0.73549 1.93547 1.86916 1.57705 1.58462 1.93577 1.78664 1.83355 1.38505 1.31016 1.05648 1.20918 1.16526 1.21021 1.00369 0.91170 0.90722 1.21219 0.94469 0.98750 1.01988 1.21304 0.94577 0.97361 0.95968 1.20955 0.99770 0.93600 1.01487 1.19376 0.91189 0.95193 0.92403 1.20481 0.98202 0.94561 0.96726 1.21889 0.98756 1.01278 0.98265 1.21793 0.99836 1.01464 0.96598 0.88360 0.88814 0.87289 0.89125 0.90856 0.93794 0.92740 0.92505 0.84134 0.85502 0.85786 0.85584 0.90885 0.92096 0.91733 0.92048 0.91020 0.91894 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 14.32 29.01 0.42 -2.23 16 2 C -0.16 -2.62 9.85 -36.03 -0.35 -2.97 16 3 C 0.15 2.60 4.80 -5.19 -0.02 2.57 16 4 N -0.98 -20.17 1.96 -116.94 -0.23 -20.40 16 5 C 0.24 6.02 5.41 -5.20 -0.03 5.99 16 6 C -0.54 -14.08 9.38 -34.44 -0.32 -14.40 16 7 H 0.06 1.53 5.90 -52.49 -0.31 1.22 16 8 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 10 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 14 S 2.69 55.62 4.23 -107.50 -0.45 55.17 16 15 O -0.98 -20.35 17.19 -57.17 -0.98 -21.33 16 16 O -0.95 -22.22 14.77 -57.17 -0.84 -23.07 16 17 C -0.66 -12.36 5.83 -39.58 -0.23 -12.59 16 18 C -0.01 -0.25 8.82 -39.58 -0.35 -0.59 16 19 C -0.15 -2.16 10.05 -39.58 -0.40 -2.55 16 20 C -0.07 -0.99 10.05 -39.59 -0.40 -1.39 16 21 C -0.14 -1.98 8.74 -39.59 -0.35 -2.32 16 22 C 0.02 0.34 4.78 -104.63 -0.50 -0.16 16 23 C -0.08 -1.28 2.63 -91.77 -0.24 -1.52 16 24 C -0.14 -1.77 8.95 37.16 0.33 -1.44 16 25 C -0.14 -1.99 9.05 37.16 0.34 -1.66 16 26 H 0.10 1.33 7.84 -52.49 -0.41 0.92 16 27 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.09 1.49 7.76 -51.93 -0.40 1.09 16 30 H 0.07 1.11 7.75 -51.93 -0.40 0.71 16 31 H 0.04 1.12 8.11 -51.93 -0.42 0.70 16 32 H 0.05 1.49 6.88 -51.93 -0.36 1.13 16 33 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.14 2.36 5.39 -52.49 -0.28 2.07 16 35 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.13 1.41 7.11 -52.49 -0.37 1.04 16 38 H 0.07 1.31 5.12 -51.81 -0.27 1.04 16 39 H 0.06 0.62 7.14 -51.93 -0.37 0.25 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -31.54 370.18 -9.94 -41.48 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.51 Total: 4.98 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: -2.21 Total: -33.55 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.51 Total: -44.94 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.83 Total: -44.40 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 55.62 SS G_CDS: -0.45 Total: 55.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.54 -9.94 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490096456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.634 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds