Wall clock time and date at job start Tue Mar 31 2020 13:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99835 * 2 1 4 4 N 1.46507 * 109.46899 * 125.00442 * 3 2 1 5 5 C 1.46500 * 119.99537 * 274.27086 * 4 3 2 6 6 C 1.50695 * 109.47645 * 275.00114 * 5 4 3 7 7 H 1.08001 * 119.99608 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00421 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99636 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 120.00178 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47378 * 59.99923 * 10 8 6 12 12 H 1.48503 * 109.47321 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47422 * 300.00030 * 10 8 6 14 14 S 1.65599 * 120.00150 * 94.27415 * 4 3 2 15 15 O 1.42095 * 106.40031 * 331.10942 * 14 4 3 16 16 O 1.42096 * 106.39845 * 198.18761 * 14 4 3 17 17 C 1.76201 * 107.21630 * 84.64895 * 14 4 3 18 18 C 1.38256 * 120.00060 * 345.98624 * 17 14 4 19 19 C 1.38219 * 119.99864 * 179.72467 * 18 17 14 20 20 C 1.38249 * 119.99775 * 0.27684 * 19 18 17 21 21 C 1.38214 * 120.00152 * 359.97438 * 20 19 18 22 22 C 1.38217 * 119.99886 * 166.18409 * 17 14 4 23 23 C 1.50702 * 119.99740 * 0.03743 * 22 17 14 24 24 C 1.53001 * 109.46595 * 124.79128 * 23 22 17 25 25 C 1.53000 * 109.46980 * 244.78776 * 23 22 17 26 26 H 1.08002 * 120.00421 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00004 * 179.97438 * 1 2 3 28 28 H 1.07995 * 119.99774 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47076 * 5.00139 * 3 2 1 30 30 H 1.09000 * 109.47049 * 244.99994 * 3 2 1 31 31 H 1.09005 * 109.47302 * 35.00520 * 5 4 3 32 32 H 1.09001 * 109.46692 * 154.99723 * 5 4 3 33 33 H 0.96994 * 119.99495 * 180.02562 * 9 8 6 34 34 H 1.08001 * 120.00382 * 0.02562 * 18 17 14 35 35 H 1.07997 * 119.99693 * 180.25876 * 19 18 17 36 36 H 1.08005 * 119.99806 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.99606 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.46995 * 4.78928 * 23 22 17 39 39 H 1.08997 * 109.47613 * 60.00178 * 24 23 22 40 40 H 1.09003 * 109.46347 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47114 * 299.99403 * 24 23 22 42 42 H 1.09001 * 109.47309 * 60.00258 * 25 23 22 43 43 H 1.08996 * 109.47425 * 180.02562 * 25 23 22 44 44 H 1.09001 * 109.47096 * 300.00598 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5325 1.7772 2.4486 6 6 2.6178 3.2795 2.5294 7 1 2.9799 3.8460 1.6841 8 6 2.2346 3.9309 3.6826 9 7 1.7950 3.2409 4.7124 10 14 2.3410 5.7931 3.7829 11 1 1.4849 6.3953 2.7294 12 1 1.8744 6.2444 5.1185 13 1 3.7488 6.2201 3.5807 14 16 4.5668 0.8587 0.9213 15 8 4.5613 -0.0970 -0.1301 16 8 5.0800 0.5850 2.2178 17 6 5.4556 2.2559 0.3191 18 6 4.7705 3.3578 -0.1582 19 6 5.4678 4.4560 -0.6253 20 6 6.8502 4.4503 -0.6205 21 6 7.5351 3.3467 -0.1481 22 6 6.8378 2.2486 0.3202 23 6 7.5845 1.0454 0.8356 24 6 8.5505 0.5453 -0.2404 25 6 8.3727 1.4325 2.0885 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.4992 1.4634 2.5970 32 1 3.1608 1.3354 3.2221 33 1 1.5251 3.6992 5.5235 34 1 3.6905 3.3624 -0.1616 35 1 4.9325 5.3184 -0.9943 36 1 7.3950 5.3083 -0.9858 37 1 8.6151 3.3421 -0.1447 38 1 6.8749 0.2557 1.0823 39 1 9.2601 1.3350 -0.4871 40 1 9.0909 -0.3247 0.1327 41 1 7.9890 0.2695 -1.1329 42 1 7.6846 1.7888 2.8551 43 1 8.9132 0.5624 2.4611 44 1 9.0823 2.2223 1.8418 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490096456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:44 Heat of formation + Delta-G solvation = -52.409509 kcal Electronic energy + Delta-G solvation = -26716.270545 eV Core-core repulsion = 23146.230425 eV Total energy + Delta-G solvation = -3570.040121 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60717 -38.33920 -38.03977 -37.13707 -36.24803 -35.01085 -33.58504 -32.25577 -30.79794 -29.36827 -28.08413 -26.59980 -24.85244 -24.27511 -23.88399 -21.32814 -20.99787 -19.95579 -18.76986 -18.55493 -18.23361 -17.44513 -16.90366 -16.48244 -16.33316 -15.97227 -15.57706 -15.27534 -14.98141 -14.81125 -14.68011 -14.60592 -14.22476 -13.86276 -13.50750 -13.45391 -13.41682 -13.20608 -13.06253 -13.01249 -12.97002 -12.89771 -12.50390 -12.37610 -12.31931 -12.18215 -12.08744 -11.93853 -11.80182 -11.63189 -11.36478 -10.57473 -10.35239 -10.28242 -9.87758 -9.76191 -8.17167 -6.30613 -0.54077 -0.09614 0.34140 1.34320 1.41315 1.43967 1.50678 2.02775 2.41875 2.55620 2.66184 3.15006 3.46251 3.55511 3.67522 3.85403 3.95504 4.12254 4.13726 4.15677 4.27674 4.32909 4.37477 4.42806 4.70510 4.73575 4.76580 4.80044 4.87149 4.89761 4.97178 5.05059 5.06914 5.11782 5.24442 5.27478 5.32745 5.38477 5.40494 5.43344 5.67484 5.74120 5.78877 5.94178 5.96992 6.08230 6.80067 7.39123 8.91475 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010310 B = 0.006530 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.193939 B = 4286.673154 C = 5515.771126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.193 4.193 3 C 0.146 3.854 4 N -0.983 5.983 5 C 0.262 3.738 6 C -0.547 4.547 7 H 0.078 0.922 8 C 0.012 3.988 9 N -0.928 5.928 10 Si 0.955 3.045 11 H -0.258 1.258 12 H -0.287 1.287 13 H -0.272 1.272 14 S 2.691 3.309 15 O -0.989 6.989 16 O -0.992 6.992 17 C -0.681 4.681 18 C -0.037 4.037 19 C -0.150 4.150 20 C -0.062 4.062 21 C -0.137 4.137 22 C 0.001 3.999 23 C -0.092 4.092 24 C -0.140 4.140 25 C -0.138 4.138 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.029 0.971 32 H 0.016 0.984 33 H 0.265 0.735 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.170 0.830 37 H 0.163 0.837 38 H 0.038 0.962 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.262 1.659 -13.301 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.213 4.213 3 C 0.021 3.979 4 N -0.821 5.821 5 C 0.139 3.861 6 C -0.586 4.586 7 H 0.096 0.904 8 C -0.188 4.188 9 N -0.568 5.568 10 Si 0.779 3.221 11 H -0.182 1.182 12 H -0.212 1.212 13 H -0.197 1.197 14 S 2.785 3.215 15 O -0.979 6.979 16 O -0.982 6.982 17 C -0.771 4.771 18 C -0.055 4.055 19 C -0.169 4.169 20 C -0.079 4.079 21 C -0.156 4.156 22 C -0.001 4.001 23 C -0.111 4.111 24 C -0.197 4.197 25 C -0.195 4.195 26 H 0.126 0.874 27 H 0.134 0.866 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.154 0.846 35 H 0.174 0.826 36 H 0.188 0.812 37 H 0.181 0.819 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.096 0.904 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.517 0.839 -12.943 16.087 hybrid contribution -0.471 1.113 0.632 1.364 sum 9.047 1.952 -12.310 15.401 Atomic orbital electron populations 1.24051 0.95009 1.03158 0.97825 1.23376 0.97195 0.98507 1.02231 1.20547 0.93212 0.96876 0.87264 1.57205 1.24796 1.82434 1.17694 1.18788 0.95400 0.94384 0.77552 1.21900 1.43841 0.92459 1.00401 0.90399 1.25798 0.94681 1.03148 0.95138 1.70064 1.44312 1.37673 1.04702 0.85652 0.78851 0.79895 0.77656 1.18221 1.21223 1.19706 1.01656 0.72499 0.74583 0.72742 1.93508 1.87065 1.59127 1.58217 1.93517 1.79345 1.84646 1.40742 1.30573 1.06685 1.20474 1.19349 1.21164 1.00513 0.91939 0.91925 1.21636 0.95585 0.98520 1.01141 1.21873 0.94156 0.98194 0.93721 1.21401 1.01610 0.92516 1.00034 1.19713 0.90633 0.96740 0.92975 1.20614 0.98444 0.93593 0.98481 1.21900 0.98375 1.02819 0.96639 1.21804 0.99529 1.03082 0.95094 0.87375 0.86635 0.88199 0.88462 0.89138 0.95340 0.96570 0.92586 0.84575 0.82602 0.81237 0.81921 0.94383 0.89161 0.90272 0.92882 0.94527 0.90360 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.51 14.32 67.78 0.97 -3.54 16 2 C -0.19 -6.42 9.85 25.64 0.25 -6.17 16 3 C 0.15 5.13 4.80 85.63 0.41 5.55 16 4 N -0.98 -42.55 1.96 -523.90 -1.03 -43.58 16 5 C 0.26 13.61 5.41 85.63 0.46 14.07 16 6 C -0.55 -28.90 9.38 25.60 0.24 -28.66 16 7 H 0.08 3.79 5.90 -2.91 -0.02 3.77 16 8 C 0.01 0.65 5.46 84.65 0.46 1.11 16 9 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 10 Si 0.95 42.22 29.54 68.60 2.03 44.25 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 12 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 14 S 2.69 118.04 4.23 -56.49 -0.24 117.80 16 15 O -0.99 -43.59 17.19 -128.00 -2.20 -45.79 16 16 O -0.99 -50.29 14.77 -128.00 -1.89 -52.18 16 17 C -0.68 -25.99 5.83 22.27 0.13 -25.86 16 18 C -0.04 -1.24 8.82 22.27 0.20 -1.04 16 19 C -0.15 -3.96 10.05 22.27 0.22 -3.73 16 20 C -0.06 -1.36 10.05 22.27 0.22 -1.14 16 21 C -0.14 -3.37 8.74 22.27 0.19 -3.18 16 22 C 0.00 0.03 4.78 -19.87 -0.09 -0.06 16 23 C -0.09 -2.90 2.63 -11.54 -0.03 -2.93 16 24 C -0.14 -3.17 8.95 71.98 0.64 -2.53 16 25 C -0.14 -3.86 9.05 71.98 0.65 -3.20 16 26 H 0.11 2.78 7.84 -2.91 -0.02 2.76 16 27 H 0.12 2.68 8.06 -2.91 -0.02 2.66 16 28 H 0.10 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.10 3.23 7.76 -2.39 -0.02 3.21 16 30 H 0.09 2.81 7.75 -2.39 -0.02 2.79 16 31 H 0.03 1.54 8.11 -2.38 -0.02 1.52 16 32 H 0.02 0.96 6.88 -2.39 -0.02 0.94 16 33 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 34 H 0.14 4.55 5.39 -2.91 -0.02 4.54 16 35 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 37 H 0.16 2.73 7.11 -2.91 -0.02 2.71 16 38 H 0.04 1.44 5.12 -2.46 -0.01 1.43 16 39 H 0.09 1.48 7.14 -2.39 -0.02 1.46 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.09 1.84 7.67 -2.39 -0.02 1.82 16 Total: -1.00 -72.62 370.18 2.87 -69.75 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.98 Total: 25.27 kcal Atomic # 6 Polarization: -66.25 SS G_CDS: 4.94 Total: -61.31 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -0.74 Total: -97.78 kcal Atomic # 8 Polarization: -93.88 SS G_CDS: -4.09 Total: -97.97 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 118.04 SS G_CDS: -0.24 Total: 117.80 kcal Total: -72.62 2.87 -69.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490096456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.341 kcal (2) G-P(sol) polarization free energy of solvation -72.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds