Wall clock time and date at job start Tue Mar 31 2020 14:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47284 * 42.27097 * 3 2 1 5 5 C 1.46495 * 120.00043 * 269.99888 * 4 3 2 6 6 C 1.47206 * 109.46991 * 270.00167 * 5 4 3 7 7 C 5.38486 * 150.86131 * 351.44426 * 2 1 3 8 8 C 6.72333 * 155.00467 * 342.37564 * 2 1 3 9 9 C 1.34775 * 119.99892 * 89.99729 * 4 3 2 10 10 O 1.21726 * 120.00073 * 179.97438 * 9 4 3 11 11 C 1.46258 * 120.00322 * 0.02562 * 9 4 3 12 12 C 1.35015 * 120.00185 * 179.97438 * 11 9 4 13 13 C 1.46966 * 119.99859 * 179.72327 * 12 11 9 14 14 C 1.40020 * 120.10099 * 359.72646 * 13 12 11 15 15 C 1.37601 * 119.89632 * 179.78802 * 14 13 12 16 16 C 1.39173 * 120.10087 * 0.48795 * 15 14 13 17 17 O 1.35568 * 119.90002 * 179.76457 * 16 15 14 18 18 C 1.34779 * 117.00070 * 174.42258 * 17 16 15 19 19 H 1.07996 * 120.00296 * 5.05680 * 18 17 16 20 20 C 1.38728 * 119.99880 * 185.05920 * 18 17 16 21 21 N 1.31508 * 119.99925 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99891 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46999 * 90.00502 * 22 20 18 24 24 H 1.48502 * 109.46807 * 210.00364 * 22 20 18 25 25 H 1.48497 * 109.47364 * 330.00385 * 22 20 18 26 26 C 1.39182 * 120.20443 * 359.74007 * 16 15 14 27 27 C 1.37597 * 120.10073 * 0.02562 * 26 16 15 28 28 H 4.40639 * 5.51345 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.47470 * 282.26931 * 3 2 1 30 30 H 1.09001 * 109.46980 * 162.27281 * 3 2 1 31 31 H 1.09004 * 109.47425 * 29.99800 * 5 4 3 32 32 H 1.09001 * 109.47286 * 149.99906 * 5 4 3 33 33 H 1.08999 * 109.46817 * 82.29999 * 8 7 6 34 34 H 1.09005 * 109.46878 * 202.29407 * 8 7 6 35 35 H 1.08990 * 109.47171 * 322.30061 * 8 7 6 36 36 H 1.08007 * 119.99439 * 359.72456 * 11 9 4 37 37 H 1.07994 * 120.00134 * 359.72623 * 12 11 9 38 38 H 1.08001 * 120.05482 * 359.97438 * 14 13 12 39 39 H 1.08000 * 119.94685 * 180.22931 * 15 14 13 40 40 H 0.96995 * 120.00201 * 179.97438 * 21 20 18 41 41 H 1.07995 * 119.94818 * 179.97438 * 26 16 15 42 42 H 1.07996 * 120.05582 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0212 -0.9291 5 6 3.3797 -2.3854 -0.4548 6 6 4.7700 -2.4994 0.0153 7 6 5.8774 -2.5928 0.3901 8 6 7.2676 -2.7076 0.8602 9 6 3.3593 -0.7061 -2.2201 10 8 3.7659 -1.5550 -2.9920 11 6 3.1154 0.6561 -2.6936 12 6 3.3407 0.9718 -3.9868 13 6 3.0898 2.3391 -4.4638 14 6 2.6117 3.3144 -3.5803 15 6 2.3824 4.5943 -4.0305 16 6 2.6153 4.9175 -5.3640 17 8 2.3835 6.1786 -5.8042 18 6 2.7370 6.4580 -7.0744 19 1 3.1071 5.6729 -7.7171 20 6 2.6256 7.7541 -7.5563 21 7 2.9700 8.0266 -8.7959 22 14 1.9848 9.1118 -6.4449 23 1 3.1219 9.7416 -5.7268 24 1 1.2891 10.1358 -7.2651 25 1 1.0341 8.5375 -5.4593 26 6 3.0861 3.9501 -6.2469 27 6 3.3228 2.6688 -5.8047 28 1 -1.0498 -0.0001 -0.0003 29 1 3.0095 -0.2176 1.0042 30 1 3.0089 0.9797 -0.3129 31 1 2.6990 -2.6126 0.3658 32 1 3.2130 -3.0891 -1.2704 33 1 7.9235 -2.8998 0.0111 34 1 7.5649 -1.7779 1.3456 35 1 7.3439 -3.5297 1.5716 36 1 2.7512 1.4084 -2.0095 37 1 3.7053 0.2197 -4.6706 38 1 2.4260 3.0634 -2.5464 39 1 2.0171 5.3482 -3.3488 40 1 2.8918 8.9327 -9.1330 41 1 3.2651 4.2053 -7.2809 42 1 3.6877 1.9186 -6.4905 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490701528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:23 Heat of formation + Delta-G solvation = 91.201773 kcal Electronic energy + Delta-G solvation = -24485.087422 eV Core-core repulsion = 20785.830803 eV Total energy + Delta-G solvation = -3699.256619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.07008 -39.32943 -37.13476 -36.41844 -34.53078 -33.28697 -32.86578 -32.47982 -30.55642 -30.20846 -28.43226 -27.45458 -26.25614 -25.41340 -22.92639 -22.26424 -20.60403 -19.33589 -18.45339 -17.96670 -17.57207 -17.32116 -16.93306 -16.37768 -15.25135 -15.07357 -14.97212 -14.22035 -14.14179 -14.04414 -13.97942 -13.94152 -13.84118 -13.60743 -13.57108 -13.55042 -12.99256 -12.85608 -12.57571 -12.41533 -11.89776 -11.78927 -11.22284 -11.03256 -10.90911 -10.74848 -10.50042 -10.35066 -10.28140 -9.94635 -9.74202 -9.66909 -9.55910 -9.24650 -8.93151 -8.48076 -7.25934 -6.61336 -4.25002 0.94728 1.97389 2.02553 2.40826 2.50759 2.57921 2.61650 3.11001 3.14943 3.28169 3.35299 3.42683 3.98788 4.07960 4.17695 4.41954 4.60690 4.61968 4.84658 4.92986 5.00019 5.09190 5.19638 5.24024 5.27377 5.37337 5.37644 5.42668 5.52450 5.58802 5.61057 5.68106 5.92723 6.00768 6.12528 6.28552 6.41980 6.51465 6.66174 6.90665 7.07676 7.11939 7.22093 7.34848 7.40600 7.42269 7.61834 7.83101 8.14426 8.71866 9.32085 10.44868 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.002167 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.359766 B =12916.093514 C =13479.729927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.214 4.214 3 C 0.221 3.779 4 N -0.611 5.611 5 C 0.231 3.769 6 C -0.204 4.204 7 C -0.173 4.173 8 C -0.042 4.042 9 C 0.562 3.438 10 O -0.546 6.546 11 C -0.281 4.281 12 C 0.040 3.960 13 C -0.190 4.190 14 C -0.044 4.044 15 C -0.199 4.199 16 C 0.174 3.826 17 O -0.202 6.202 18 C -0.392 4.392 19 H 0.111 0.889 20 C 0.066 3.934 21 N -0.866 5.866 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.258 1.258 26 C -0.230 4.230 27 C -0.036 4.036 28 H 0.218 0.782 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.283 0.717 41 H 0.138 0.862 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -16.130 19.133 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.215 4.215 3 C 0.098 3.902 4 N -0.343 5.343 5 C 0.110 3.890 6 C -0.205 4.205 7 C -0.175 4.175 8 C -0.097 4.097 9 C 0.357 3.643 10 O -0.425 6.425 11 C -0.302 4.302 12 C 0.020 3.980 13 C -0.191 4.191 14 C -0.062 4.062 15 C -0.219 4.219 16 C 0.119 3.881 17 O -0.105 6.105 18 C -0.467 4.467 19 H 0.128 0.872 20 C -0.140 4.140 21 N -0.502 5.502 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.182 1.182 26 C -0.249 4.249 27 C -0.054 4.054 28 H 0.235 0.765 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.094 0.906 41 H 0.155 0.845 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.720 -16.167 18.607 24.660 hybrid contribution -0.454 0.687 0.284 0.871 sum 0.266 -15.480 18.891 24.425 Atomic orbital electron populations 1.25002 0.95973 0.99060 0.99424 1.23537 0.94898 1.01661 1.01415 1.18432 0.83670 0.93400 0.94660 1.47796 1.66679 1.10328 1.09498 1.18163 0.86547 0.84473 0.99858 1.22754 0.95260 1.02390 1.00085 1.22436 0.94446 0.99365 1.01231 1.18884 0.86717 1.02892 1.01249 1.18486 0.76056 0.89120 0.80678 1.90789 1.46380 1.50984 1.54335 1.22507 1.14494 0.95187 0.98012 1.22329 0.86916 0.94152 0.94588 1.18512 1.12837 0.93148 0.94601 1.20867 0.95458 0.91711 0.98173 1.20140 1.10903 0.97277 0.93531 1.19361 0.91536 0.84812 0.92350 1.83502 1.70420 1.25065 1.31464 1.20881 1.44185 0.97162 0.84427 0.87179 1.24548 0.95805 0.97527 0.96085 1.69614 1.44108 1.22193 1.14277 0.86154 0.79942 0.80303 0.80410 1.19623 1.20511 1.18201 1.21221 1.08890 0.93344 1.01424 1.21045 0.94806 0.95588 0.93978 0.76547 0.88123 0.87302 0.88376 0.87526 0.90114 0.90095 0.90180 0.85608 0.85745 0.86368 0.86103 0.90642 0.84478 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 19.25 29.55 0.57 -0.97 16 2 C -0.21 -2.03 13.68 -37.12 -0.51 -2.54 16 3 C 0.22 1.91 5.59 -6.83 -0.04 1.87 16 4 N -0.61 -6.90 2.39 -182.08 -0.44 -7.34 16 5 C 0.23 2.35 5.88 -6.83 -0.04 2.31 16 6 C -0.20 -2.32 13.67 -37.13 -0.51 -2.83 16 7 C -0.17 -1.85 14.13 -37.13 -0.52 -2.38 16 8 C -0.04 -0.28 10.32 34.37 0.35 0.08 16 9 C 0.56 8.11 7.59 -13.04 -0.10 8.01 16 10 O -0.55 -9.62 15.81 5.17 0.08 -9.54 16 11 C -0.28 -3.85 8.60 -37.51 -0.32 -4.17 16 12 C 0.04 0.60 9.45 -37.19 -0.35 0.24 16 13 C -0.19 -3.13 5.87 -105.02 -0.62 -3.74 16 14 C -0.04 -0.71 9.40 -39.15 -0.37 -1.07 16 15 C -0.20 -3.69 9.97 -39.47 -0.39 -4.08 16 16 C 0.17 3.79 6.66 -38.88 -0.26 3.53 16 17 O -0.20 -5.02 8.57 0.75 0.01 -5.02 16 18 C -0.39 -10.47 9.94 30.91 0.31 -10.16 16 19 H 0.11 3.00 5.41 -52.49 -0.28 2.71 16 20 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 21 N -0.87 -23.86 13.96 55.48 0.77 -23.09 16 22 Si 0.91 20.54 28.62 -169.99 -4.86 15.68 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 26 C -0.23 -4.69 9.14 -39.47 -0.36 -5.05 16 27 C -0.04 -0.63 9.78 -39.14 -0.38 -1.01 16 28 H 0.22 1.22 7.80 -54.10 -0.42 0.80 16 29 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 30 H 0.11 0.86 6.10 -51.93 -0.32 0.55 16 31 H 0.10 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.11 1.18 7.42 -51.93 -0.39 0.79 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.13 1.49 4.21 -52.48 -0.22 1.27 16 37 H 0.12 1.86 7.52 -52.49 -0.39 1.47 16 38 H 0.12 1.54 6.16 -52.49 -0.32 1.22 16 39 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 40 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.14 2.92 5.62 -52.49 -0.29 2.62 16 42 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 380.34 15.07 5.73 5.73 Total: -1.00 -31.76 380.34 -7.07 -38.83 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -4.73 Total: 5.03 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -3.64 Total: -20.30 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.34 Total: -30.42 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.09 Total: -14.55 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.86 Total: 15.68 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.76 -7.07 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490701528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.037 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds