Wall clock time and date at job start Tue Mar 31 2020 14:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47284 * 42.27097 * 3 2 1 5 5 C 1.46495 * 120.00043 * 269.99888 * 4 3 2 6 6 C 1.47206 * 109.46991 * 270.00167 * 5 4 3 7 7 C 5.38486 * 150.86131 * 351.44426 * 2 1 3 8 8 C 6.72333 * 155.00467 * 342.37564 * 2 1 3 9 9 C 1.34775 * 119.99892 * 89.99729 * 4 3 2 10 10 O 1.21726 * 120.00073 * 179.97438 * 9 4 3 11 11 C 1.46258 * 120.00322 * 0.02562 * 9 4 3 12 12 C 1.35015 * 120.00185 * 179.97438 * 11 9 4 13 13 C 1.46966 * 119.99859 * 179.72327 * 12 11 9 14 14 C 1.40020 * 120.10099 * 359.72646 * 13 12 11 15 15 C 1.37601 * 119.89632 * 179.78802 * 14 13 12 16 16 C 1.39173 * 120.10087 * 0.48795 * 15 14 13 17 17 O 1.35568 * 119.90002 * 179.76457 * 16 15 14 18 18 C 1.34779 * 117.00070 * 174.42258 * 17 16 15 19 19 H 1.07996 * 120.00296 * 5.05680 * 18 17 16 20 20 C 1.38728 * 119.99880 * 185.05920 * 18 17 16 21 21 N 1.31508 * 119.99925 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99891 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46999 * 90.00502 * 22 20 18 24 24 H 1.48502 * 109.46807 * 210.00364 * 22 20 18 25 25 H 1.48497 * 109.47364 * 330.00385 * 22 20 18 26 26 C 1.39182 * 120.20443 * 359.74007 * 16 15 14 27 27 C 1.37597 * 120.10073 * 0.02562 * 26 16 15 28 28 H 4.40639 * 5.51345 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.47470 * 282.26931 * 3 2 1 30 30 H 1.09001 * 109.46980 * 162.27281 * 3 2 1 31 31 H 1.09004 * 109.47425 * 29.99800 * 5 4 3 32 32 H 1.09001 * 109.47286 * 149.99906 * 5 4 3 33 33 H 1.08999 * 109.46817 * 82.29999 * 8 7 6 34 34 H 1.09005 * 109.46878 * 202.29407 * 8 7 6 35 35 H 1.08990 * 109.47171 * 322.30061 * 8 7 6 36 36 H 1.08007 * 119.99439 * 359.72456 * 11 9 4 37 37 H 1.07994 * 120.00134 * 359.72623 * 12 11 9 38 38 H 1.08001 * 120.05482 * 359.97438 * 14 13 12 39 39 H 1.08000 * 119.94685 * 180.22931 * 15 14 13 40 40 H 0.96995 * 120.00201 * 179.97438 * 21 20 18 41 41 H 1.07995 * 119.94818 * 179.97438 * 26 16 15 42 42 H 1.07996 * 120.05582 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0212 -0.9291 5 6 3.3797 -2.3854 -0.4548 6 6 4.7700 -2.4994 0.0153 7 6 5.8774 -2.5928 0.3901 8 6 7.2676 -2.7076 0.8602 9 6 3.3593 -0.7061 -2.2201 10 8 3.7659 -1.5550 -2.9920 11 6 3.1154 0.6561 -2.6936 12 6 3.3407 0.9718 -3.9868 13 6 3.0898 2.3391 -4.4638 14 6 2.6117 3.3144 -3.5803 15 6 2.3824 4.5943 -4.0305 16 6 2.6153 4.9175 -5.3640 17 8 2.3835 6.1786 -5.8042 18 6 2.7370 6.4580 -7.0744 19 1 3.1071 5.6729 -7.7171 20 6 2.6256 7.7541 -7.5563 21 7 2.9700 8.0266 -8.7959 22 14 1.9848 9.1118 -6.4449 23 1 3.1219 9.7416 -5.7268 24 1 1.2891 10.1358 -7.2651 25 1 1.0341 8.5375 -5.4593 26 6 3.0861 3.9501 -6.2469 27 6 3.3228 2.6688 -5.8047 28 1 -1.0498 -0.0001 -0.0003 29 1 3.0095 -0.2176 1.0042 30 1 3.0089 0.9797 -0.3129 31 1 2.6990 -2.6126 0.3658 32 1 3.2130 -3.0891 -1.2704 33 1 7.9235 -2.8998 0.0111 34 1 7.5649 -1.7779 1.3456 35 1 7.3439 -3.5297 1.5716 36 1 2.7512 1.4084 -2.0095 37 1 3.7053 0.2197 -4.6706 38 1 2.4260 3.0634 -2.5464 39 1 2.0171 5.3482 -3.3488 40 1 2.8918 8.9327 -9.1330 41 1 3.2651 4.2053 -7.2809 42 1 3.6877 1.9186 -6.4905 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490701528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:22 Heat of formation + Delta-G solvation = 75.068993 kcal Electronic energy + Delta-G solvation = -24485.786992 eV Core-core repulsion = 20785.830803 eV Total energy + Delta-G solvation = -3699.956189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.19279 -40.87236 -38.66147 -37.42487 -35.31379 -34.74479 -34.20066 -33.59142 -32.03178 -31.05574 -29.71748 -28.16433 -27.61618 -26.77646 -24.24889 -23.74228 -21.89848 -20.48888 -19.78117 -19.25145 -18.91577 -18.60834 -17.71613 -17.33712 -16.66941 -16.44588 -16.01903 -15.81203 -15.63457 -15.49632 -14.99123 -14.75507 -14.70774 -14.51966 -14.42893 -14.39084 -14.25507 -14.16597 -14.06451 -13.66127 -13.40889 -13.11742 -12.73641 -12.66160 -12.37724 -11.95441 -11.61503 -11.32104 -11.27655 -11.18380 -11.10140 -10.73136 -10.70140 -10.68303 -10.18223 -9.93694 -8.77850 -8.54061 -6.25883 -0.34613 0.53449 1.04151 1.17055 1.32638 1.37067 1.52367 1.71631 1.85780 1.92619 2.24715 2.26100 2.51366 2.78764 2.98601 3.13333 3.30241 3.51749 3.59850 3.87205 4.01817 4.08843 4.19995 4.27558 4.32330 4.43787 4.50919 4.56656 4.63577 4.75022 4.79827 4.80543 4.81319 5.05112 5.06944 5.10498 5.13935 5.23700 5.32117 5.41101 5.55882 5.68575 5.76692 5.81900 6.12441 6.20583 6.64178 6.70371 6.78902 7.04523 7.49670 8.56654 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.002167 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.359766 B =12916.093514 C =13479.729927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.240 4.240 3 C 0.216 3.784 4 N -0.602 5.602 5 C 0.230 3.770 6 C -0.238 4.238 7 C -0.178 4.178 8 C -0.046 4.046 9 C 0.554 3.446 10 O -0.583 6.583 11 C -0.246 4.246 12 C 0.019 3.981 13 C -0.162 4.162 14 C -0.038 4.038 15 C -0.193 4.193 16 C 0.139 3.861 17 O -0.232 6.232 18 C -0.404 4.404 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.916 5.916 22 Si 0.972 3.028 23 H -0.264 1.264 24 H -0.268 1.268 25 H -0.259 1.259 26 C -0.243 4.243 27 C -0.043 4.043 28 H 0.240 0.760 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.153 0.847 37 H 0.123 0.877 38 H 0.162 0.838 39 H 0.140 0.860 40 H 0.287 0.713 41 H 0.115 0.885 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -17.711 23.483 29.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.241 4.241 3 C 0.095 3.905 4 N -0.332 5.332 5 C 0.109 3.891 6 C -0.239 4.239 7 C -0.179 4.179 8 C -0.102 4.102 9 C 0.348 3.652 10 O -0.466 6.466 11 C -0.267 4.267 12 C 0.000 4.000 13 C -0.163 4.163 14 C -0.056 4.056 15 C -0.212 4.212 16 C 0.088 3.912 17 O -0.138 6.138 18 C -0.480 4.480 19 H 0.102 0.898 20 C -0.188 4.188 21 N -0.556 5.556 22 Si 0.793 3.207 23 H -0.189 1.189 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.262 4.262 27 C -0.061 4.061 28 H 0.256 0.744 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.170 0.830 37 H 0.141 0.859 38 H 0.179 0.821 39 H 0.158 0.842 40 H 0.096 0.904 41 H 0.132 0.868 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.292 -17.801 23.026 29.106 hybrid contribution -0.259 0.584 -0.698 0.947 sum 0.033 -17.217 22.328 28.195 Atomic orbital electron populations 1.25728 0.96883 0.98019 0.98460 1.23762 0.95389 1.02632 1.02352 1.18706 0.83546 0.93027 0.95238 1.47847 1.65146 1.11413 1.08840 1.18291 0.86990 0.83547 1.00272 1.23107 0.96050 1.03672 1.01062 1.23384 0.95458 0.98334 1.00741 1.19124 0.84631 1.04448 1.01961 1.18669 0.75966 0.88990 0.81595 1.90784 1.48089 1.51980 1.55699 1.22791 1.10820 0.95384 0.97678 1.22211 0.89132 0.93263 0.95441 1.18780 1.09618 0.93937 0.93947 1.21301 0.93932 0.90312 1.00030 1.20477 1.09716 0.98788 0.92193 1.19927 0.92938 0.84258 0.94080 1.83460 1.73379 1.26665 1.30278 1.20758 1.44844 0.96975 0.85389 0.89811 1.25345 0.96313 0.99669 0.97454 1.69701 1.47038 1.22879 1.15956 0.85202 0.79403 0.77519 0.78539 1.18931 1.19300 1.18331 1.21225 1.09695 0.94700 1.00576 1.21284 0.94740 0.94794 0.95308 0.74355 0.85763 0.86198 0.85442 0.88953 0.89631 0.88653 0.88177 0.82952 0.85898 0.82062 0.84228 0.90366 0.86762 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 19.25 74.32 1.43 -0.92 16 2 C -0.24 -3.61 13.68 31.13 0.43 -3.18 16 3 C 0.22 2.83 5.59 84.57 0.47 3.31 16 4 N -0.60 -11.75 2.39 -848.17 -2.03 -13.77 16 5 C 0.23 4.18 5.88 84.58 0.50 4.68 16 6 C -0.24 -4.96 13.67 31.14 0.43 -4.54 16 7 C -0.18 -3.42 14.13 31.14 0.44 -2.98 16 8 C -0.05 -0.50 10.32 70.18 0.72 0.23 16 9 C 0.55 14.46 7.59 86.33 0.66 15.11 16 10 O -0.58 -19.75 15.81 -4.43 -0.07 -19.82 16 11 C -0.25 -5.75 8.60 23.61 0.20 -5.55 16 12 C 0.02 0.52 9.45 23.82 0.23 0.74 16 13 C -0.16 -4.88 5.87 -20.12 -0.12 -5.00 16 14 C -0.04 -1.08 9.40 22.55 0.21 -0.87 16 15 C -0.19 -6.74 9.97 22.34 0.22 -6.52 16 16 C 0.14 6.14 6.66 22.72 0.15 6.29 16 17 O -0.23 -12.00 8.57 -20.22 -0.17 -12.17 16 18 C -0.40 -22.97 9.94 67.94 0.68 -22.29 16 19 H 0.08 5.01 5.41 -2.91 -0.02 4.99 16 20 C 0.01 0.66 5.49 84.86 0.47 1.13 16 21 N -0.92 -53.32 13.96 21.63 0.30 -53.02 16 22 Si 0.97 43.62 28.62 68.60 1.96 45.59 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 25 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 26 C -0.24 -10.28 9.14 22.34 0.20 -10.07 16 27 C -0.04 -1.48 9.78 22.55 0.22 -1.26 16 28 H 0.24 1.76 7.80 -4.43 -0.03 1.72 16 29 H 0.12 1.08 8.07 -2.39 -0.02 1.06 16 30 H 0.12 1.29 6.10 -2.39 -0.01 1.27 16 31 H 0.13 1.50 8.07 -2.38 -0.02 1.48 16 32 H 0.09 1.95 7.42 -2.39 -0.02 1.93 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.15 2.71 4.21 -2.91 -0.01 2.70 16 37 H 0.12 3.43 7.52 -2.91 -0.02 3.40 16 38 H 0.16 3.19 6.16 -2.91 -0.02 3.17 16 39 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 40 H 0.29 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.11 5.32 5.62 -2.91 -0.02 5.30 16 42 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -73.44 380.34 8.58 -64.86 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 1.06 Total: 20.02 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 7.54 Total: -31.68 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -1.73 Total: -66.79 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.24 Total: -31.99 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.96 Total: 45.59 kcal Total: -73.44 8.58 -64.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490701528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.926 kcal (2) G-P(sol) polarization free energy of solvation -73.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds