Wall clock time and date at job start Tue Mar 31 2020 13:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46990 * 318.08889 * 3 2 1 5 5 C 1.36804 * 119.99779 * 263.28728 * 4 3 2 6 6 H 1.07992 * 120.00298 * 214.67952 * 5 4 3 7 7 C 1.39043 * 119.99944 * 34.67393 * 5 4 3 8 8 N 1.31381 * 119.99778 * 5.51469 * 7 5 4 9 9 Si 1.86798 * 120.00163 * 185.50543 * 7 5 4 10 10 H 1.48506 * 109.46853 * 90.00489 * 9 7 5 11 11 H 1.48495 * 109.47140 * 210.00217 * 9 7 5 12 12 H 1.48498 * 109.46958 * 330.00720 * 9 7 5 13 13 C 1.34766 * 120.00179 * 83.29178 * 4 3 2 14 14 O 1.21780 * 120.00443 * 5.37975 * 13 4 3 15 15 C 1.46365 * 119.99789 * 185.38036 * 13 4 3 16 16 C 1.37934 * 125.96139 * 175.31224 * 15 13 4 17 17 C 1.39790 * 106.76254 * 179.77965 * 16 15 13 18 18 C 1.36592 * 107.11359 * 0.35340 * 17 16 15 19 19 C 1.47662 * 125.65470 * 179.90285 * 18 17 16 20 20 C 1.39667 * 120.15610 * 179.71208 * 19 18 17 21 21 C 1.37926 * 119.84504 * 179.97438 * 20 19 18 22 22 C 1.38377 * 120.15438 * 0.02926 * 21 20 19 23 23 C 1.50704 * 119.84459 * 179.97438 * 22 21 20 24 24 C 1.53004 * 109.46801 * 89.99885 * 23 22 21 25 25 C 1.38380 * 120.30922 * 0.22703 * 22 21 20 26 26 C 1.37935 * 120.15263 * 359.49473 * 25 22 21 27 27 O 1.34385 * 108.69552 * 359.63820 * 18 17 16 28 28 H 4.40645 * 5.51464 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.46286 * 198.08330 * 3 2 1 30 30 H 1.09002 * 109.46450 * 78.08731 * 3 2 1 31 31 H 0.97004 * 119.99746 * 180.02562 * 8 7 5 32 32 H 1.07994 * 126.61649 * 0.03252 * 16 15 13 33 33 H 1.07998 * 126.44219 * 180.25034 * 17 16 15 34 34 H 1.08001 * 120.07450 * 0.02562 * 20 19 18 35 35 H 1.08004 * 119.92256 * 180.02562 * 21 20 19 36 36 H 1.08994 * 109.47425 * 330.00162 * 23 22 21 37 37 H 1.09000 * 109.47004 * 209.99406 * 23 22 21 38 38 H 1.09000 * 109.47393 * 299.99855 * 24 23 22 39 39 H 1.08999 * 109.46752 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47180 * 59.99966 * 24 23 22 41 41 H 1.08002 * 119.91929 * 179.72194 * 25 22 21 42 42 H 1.08000 * 120.07221 * 180.25609 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -1.0270 0.9226 5 6 3.4932 -0.6864 2.1982 6 1 4.3129 -1.1957 2.6830 7 6 2.8022 0.3156 2.8704 8 7 1.7386 0.8601 2.3242 9 14 3.3860 0.8874 4.5501 10 1 4.3490 2.0058 4.3852 11 1 2.2220 1.3502 5.3476 12 1 4.0512 -0.2390 5.2528 13 6 3.2315 -2.3078 0.5148 14 8 3.0067 -2.5956 -0.6470 15 6 3.6066 -3.3531 1.4682 16 6 3.6537 -4.7070 1.2088 17 6 4.0630 -5.3300 2.3914 18 6 4.2416 -4.3469 3.3227 19 6 4.6715 -4.5530 4.7202 20 6 4.8237 -3.4597 5.5760 21 6 5.2251 -3.6596 6.8803 22 6 5.4774 -4.9397 7.3415 23 6 5.9162 -5.1500 8.7678 24 6 4.6860 -5.3469 9.6560 25 6 5.3338 -6.0270 6.4976 26 6 4.9275 -5.8422 5.1925 27 8 3.9669 -3.1604 2.7546 28 1 -1.0499 -0.0004 0.0001 29 1 3.0088 0.9777 0.3190 30 1 3.0094 -0.2113 -1.0056 31 1 1.2568 1.5594 2.7930 32 1 3.4232 -5.1917 0.2717 33 1 4.2089 -6.3896 2.5410 34 1 4.6267 -2.4602 5.2174 35 1 5.3427 -2.8152 7.5432 36 1 6.4745 -4.2782 9.1086 37 1 6.5514 -6.0339 8.8259 38 1 4.0507 -4.4630 9.5979 39 1 5.0033 -5.4995 10.6875 40 1 4.1275 -6.2187 9.3152 41 1 5.5367 -7.0229 6.8629 42 1 4.8119 -6.6921 4.5362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490971875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:22 Heat of formation + Delta-G solvation = 61.793260 kcal Electronic energy + Delta-G solvation = -26340.375094 eV Core-core repulsion = 22639.843226 eV Total energy + Delta-G solvation = -3700.531868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.88723 -39.23771 -38.43815 -35.26225 -34.49265 -32.50474 -32.01897 -31.45600 -30.85126 -30.58153 -28.06894 -26.39909 -25.03761 -23.96749 -22.85449 -21.81703 -20.89117 -20.29853 -19.43673 -18.39698 -17.29897 -16.71244 -16.12749 -15.52647 -15.49781 -15.34823 -14.66812 -14.56553 -14.10862 -13.88085 -13.81200 -13.59683 -13.34501 -13.21512 -12.81008 -12.43731 -12.34391 -12.31893 -12.06592 -11.97561 -11.85470 -11.64900 -11.34642 -11.20934 -10.97985 -10.84083 -10.70972 -10.47817 -9.55573 -9.45089 -9.36303 -9.05184 -8.90824 -8.84528 -8.75793 -7.96170 -7.37534 -6.47040 -4.20579 0.88493 1.46544 2.09216 2.94675 3.06166 3.10746 3.13903 3.31911 3.77351 3.94338 4.02822 4.21875 4.28797 4.63984 4.74093 4.78816 4.92863 4.97363 5.05504 5.14068 5.19734 5.38424 5.43378 5.45325 5.54299 5.65291 5.70270 5.84553 5.85691 5.92232 6.02790 6.08582 6.21130 6.29673 6.32949 6.52089 6.59669 6.61056 6.66338 6.73246 6.97600 7.01229 7.12895 7.33032 7.56799 7.65313 8.21217 8.86802 8.99066 9.20425 9.61479 10.48096 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.004090 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.224991 B = 6844.749037 C = 8443.023611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.100 4.100 3 C 0.242 3.758 4 N -0.416 5.416 5 C -0.337 4.337 6 H 0.108 0.892 7 C 0.045 3.955 8 N -0.843 5.843 9 Si 0.921 3.079 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.264 1.264 13 C 0.527 3.473 14 O -0.585 6.585 15 C 0.001 3.999 16 C -0.171 4.171 17 C -0.194 4.194 18 C 0.004 3.996 19 C -0.007 4.007 20 C -0.099 4.099 21 C -0.115 4.115 22 C -0.087 4.087 23 C -0.084 4.084 24 C -0.147 4.147 25 C -0.117 4.117 26 C -0.100 4.100 27 O -0.120 6.120 28 H 0.197 0.803 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.274 0.726 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.123 0.877 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -8.696 10.686 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.102 4.102 3 C 0.121 3.879 4 N -0.132 5.132 5 C -0.464 4.464 6 H 0.126 0.874 7 C -0.163 4.163 8 N -0.477 5.477 9 Si 0.747 3.253 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.188 1.188 13 C 0.317 3.683 14 O -0.473 6.473 15 C -0.053 4.053 16 C -0.192 4.192 17 C -0.213 4.213 18 C -0.048 4.048 19 C -0.007 4.007 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.087 4.087 23 C -0.121 4.121 24 C -0.205 4.205 25 C -0.135 4.135 26 C -0.118 4.118 27 O -0.013 6.013 28 H 0.214 0.786 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.141 0.859 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.948 -8.305 10.314 14.516 hybrid contribution -0.236 0.272 0.945 1.011 sum 5.712 -8.033 11.258 14.963 Atomic orbital electron populations 1.24128 0.95250 1.03138 1.05877 1.22858 0.94112 0.97756 0.95469 1.18079 0.84598 0.92922 0.92341 1.43535 1.53491 1.04112 1.12039 1.19840 1.16086 1.21062 0.89419 0.87427 1.25585 0.94184 0.97158 0.99414 1.69953 1.15191 1.24372 1.38206 0.86016 0.78433 0.79310 0.81510 1.19976 1.20644 1.18833 1.16847 0.83777 0.81372 0.86295 1.90740 1.58048 1.81441 1.17049 1.22793 1.04714 0.95539 0.82286 1.21853 1.05722 0.91978 0.99665 1.21501 1.07420 0.99396 0.92948 1.20704 1.06215 0.84494 0.93436 1.17813 1.00339 0.93837 0.88689 1.21499 0.97611 0.99304 0.93334 1.20943 1.00238 0.96538 0.95532 1.19963 0.99749 0.93270 0.95746 1.20534 0.97924 1.02405 0.91227 1.21758 0.97693 1.02252 0.98762 1.20825 1.01110 0.98372 0.93215 1.21017 0.99496 0.95469 0.95840 1.84629 1.63907 1.29712 1.23102 0.78586 0.88182 0.90938 0.91519 0.82990 0.83649 0.84797 0.85948 0.91087 0.91134 0.92442 0.92550 0.92532 0.85886 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -6.03 19.15 29.55 0.57 -5.47 16 2 C -0.10 -2.47 11.05 -37.12 -0.41 -2.88 16 3 C 0.24 5.82 5.10 -6.83 -0.03 5.78 16 4 N -0.42 -10.62 2.56 -119.54 -0.31 -10.93 16 5 C -0.34 -8.48 8.13 -15.03 -0.12 -8.60 16 6 H 0.11 2.67 5.74 -52.49 -0.30 2.37 16 7 C 0.05 1.11 5.16 -17.45 -0.09 1.02 16 8 N -0.84 -21.48 9.32 55.50 0.52 -20.97 16 9 Si 0.92 19.05 29.56 -169.99 -5.02 14.02 16 10 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.26 -5.24 6.71 56.52 0.38 -4.86 16 13 C 0.53 13.49 7.51 -13.00 -0.10 13.39 16 14 O -0.59 -15.77 16.54 5.12 0.08 -15.68 16 15 C 0.00 0.02 6.85 -36.43 -0.25 -0.23 16 16 C -0.17 -3.39 10.66 -39.11 -0.42 -3.80 16 17 C -0.19 -3.33 10.21 -39.60 -0.40 -3.73 16 18 C 0.00 0.08 7.02 -36.33 -0.25 -0.18 16 19 C -0.01 -0.11 5.87 -104.98 -0.62 -0.72 16 20 C -0.10 -1.60 9.72 -39.16 -0.38 -1.98 16 21 C -0.11 -1.52 9.68 -39.64 -0.38 -1.91 16 22 C -0.09 -1.01 5.14 -104.52 -0.54 -1.54 16 23 C -0.08 -0.73 6.06 -27.88 -0.17 -0.89 16 24 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 25 C -0.12 -1.33 9.68 -39.64 -0.38 -1.71 16 26 C -0.10 -1.31 9.56 -39.16 -0.37 -1.68 16 27 O -0.12 -2.66 7.21 3.61 0.03 -2.63 16 28 H 0.20 3.68 7.80 -54.10 -0.42 3.26 16 29 H 0.10 2.35 7.17 -51.93 -0.37 1.98 16 30 H 0.07 1.64 7.56 -51.93 -0.39 1.25 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.15 2.79 8.06 -52.49 -0.42 2.36 16 33 H 0.15 1.95 7.23 -52.49 -0.38 1.57 16 34 H 0.13 2.37 7.50 -52.49 -0.39 1.98 16 35 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 36 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.13 1.39 6.96 -52.49 -0.37 1.02 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -29.72 365.58 -8.34 -38.06 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.16 Total: 8.58 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -3.99 Total: -15.97 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.21 Total: -31.90 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.11 Total: -18.31 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.72 -8.34 -38.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490971875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.856 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds