Wall clock time and date at job start Tue Mar 31 2020 13:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46990 * 318.08889 * 3 2 1 5 5 C 1.36804 * 119.99779 * 263.28728 * 4 3 2 6 6 H 1.07992 * 120.00298 * 214.67952 * 5 4 3 7 7 C 1.39043 * 119.99944 * 34.67393 * 5 4 3 8 8 N 1.31381 * 119.99778 * 5.51469 * 7 5 4 9 9 Si 1.86798 * 120.00163 * 185.50543 * 7 5 4 10 10 H 1.48506 * 109.46853 * 90.00489 * 9 7 5 11 11 H 1.48495 * 109.47140 * 210.00217 * 9 7 5 12 12 H 1.48498 * 109.46958 * 330.00720 * 9 7 5 13 13 C 1.34766 * 120.00179 * 83.29178 * 4 3 2 14 14 O 1.21780 * 120.00443 * 5.37975 * 13 4 3 15 15 C 1.46365 * 119.99789 * 185.38036 * 13 4 3 16 16 C 1.37934 * 125.96139 * 175.31224 * 15 13 4 17 17 C 1.39790 * 106.76254 * 179.77965 * 16 15 13 18 18 C 1.36592 * 107.11359 * 0.35340 * 17 16 15 19 19 C 1.47662 * 125.65470 * 179.90285 * 18 17 16 20 20 C 1.39667 * 120.15610 * 179.71208 * 19 18 17 21 21 C 1.37926 * 119.84504 * 179.97438 * 20 19 18 22 22 C 1.38377 * 120.15438 * 0.02926 * 21 20 19 23 23 C 1.50704 * 119.84459 * 179.97438 * 22 21 20 24 24 C 1.53004 * 109.46801 * 89.99885 * 23 22 21 25 25 C 1.38380 * 120.30922 * 0.22703 * 22 21 20 26 26 C 1.37935 * 120.15263 * 359.49473 * 25 22 21 27 27 O 1.34385 * 108.69552 * 359.63820 * 18 17 16 28 28 H 4.40645 * 5.51464 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.46286 * 198.08330 * 3 2 1 30 30 H 1.09002 * 109.46450 * 78.08731 * 3 2 1 31 31 H 0.97004 * 119.99746 * 180.02562 * 8 7 5 32 32 H 1.07994 * 126.61649 * 0.03252 * 16 15 13 33 33 H 1.07998 * 126.44219 * 180.25034 * 17 16 15 34 34 H 1.08001 * 120.07450 * 0.02562 * 20 19 18 35 35 H 1.08004 * 119.92256 * 180.02562 * 21 20 19 36 36 H 1.08994 * 109.47425 * 330.00162 * 23 22 21 37 37 H 1.09000 * 109.47004 * 209.99406 * 23 22 21 38 38 H 1.09000 * 109.47393 * 299.99855 * 24 23 22 39 39 H 1.08999 * 109.46752 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47180 * 59.99966 * 24 23 22 41 41 H 1.08002 * 119.91929 * 179.72194 * 25 22 21 42 42 H 1.08000 * 120.07221 * 180.25609 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -1.0270 0.9226 5 6 3.4932 -0.6864 2.1982 6 1 4.3129 -1.1957 2.6830 7 6 2.8022 0.3156 2.8704 8 7 1.7386 0.8601 2.3242 9 14 3.3860 0.8874 4.5501 10 1 4.3490 2.0058 4.3852 11 1 2.2220 1.3502 5.3476 12 1 4.0512 -0.2390 5.2528 13 6 3.2315 -2.3078 0.5148 14 8 3.0067 -2.5956 -0.6470 15 6 3.6066 -3.3531 1.4682 16 6 3.6537 -4.7070 1.2088 17 6 4.0630 -5.3300 2.3914 18 6 4.2416 -4.3469 3.3227 19 6 4.6715 -4.5530 4.7202 20 6 4.8237 -3.4597 5.5760 21 6 5.2251 -3.6596 6.8803 22 6 5.4774 -4.9397 7.3415 23 6 5.9162 -5.1500 8.7678 24 6 4.6860 -5.3469 9.6560 25 6 5.3338 -6.0270 6.4976 26 6 4.9275 -5.8422 5.1925 27 8 3.9669 -3.1604 2.7546 28 1 -1.0499 -0.0004 0.0001 29 1 3.0088 0.9777 0.3190 30 1 3.0094 -0.2113 -1.0056 31 1 1.2568 1.5594 2.7930 32 1 3.4232 -5.1917 0.2717 33 1 4.2089 -6.3896 2.5410 34 1 4.6267 -2.4602 5.2174 35 1 5.3427 -2.8152 7.5432 36 1 6.4745 -4.2782 9.1086 37 1 6.5514 -6.0339 8.8259 38 1 4.0507 -4.4630 9.5979 39 1 5.0033 -5.4995 10.6875 40 1 4.1275 -6.2187 9.3152 41 1 5.5367 -7.0229 6.8629 42 1 4.8119 -6.6921 4.5362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490971875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:21 Heat of formation + Delta-G solvation = 48.168358 kcal Electronic energy + Delta-G solvation = -26340.965914 eV Core-core repulsion = 22639.843226 eV Total energy + Delta-G solvation = -3701.122688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.44100 -40.47346 -40.12230 -37.18716 -35.41444 -33.98874 -33.88742 -33.32445 -31.91164 -31.74678 -29.49874 -28.09394 -26.80765 -25.09224 -23.99237 -23.07023 -22.24778 -21.59381 -21.07352 -20.17123 -19.02147 -18.08467 -17.97099 -17.14855 -16.57520 -16.47465 -16.35008 -16.22167 -15.77867 -15.34364 -14.91617 -14.64816 -14.45519 -14.27847 -14.21279 -14.06399 -13.93438 -13.83215 -13.66222 -13.44527 -13.11949 -12.92181 -12.75216 -12.60328 -12.27592 -12.06512 -11.79839 -11.64249 -11.31980 -11.27357 -10.96443 -10.75373 -10.63202 -10.35407 -9.93261 -9.87351 -8.76628 -8.34527 -6.16131 -0.37556 0.44136 0.58939 1.37639 1.37994 1.49068 1.60967 1.75182 2.02399 2.24714 2.36277 2.42374 2.85800 3.03556 3.04124 3.58582 3.86175 3.87999 3.90919 4.03482 4.04206 4.18377 4.32962 4.45288 4.55785 4.57706 4.65365 4.66922 4.72695 4.76781 4.82292 4.94248 5.04043 5.07840 5.12524 5.16740 5.35128 5.38240 5.40472 5.42928 5.46257 5.62045 5.67252 5.67613 6.00350 6.11514 6.29854 6.95221 7.14032 7.29366 7.69849 8.60252 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.004090 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.224991 B = 6844.749037 C = 8443.023611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.144 4.144 3 C 0.243 3.757 4 N -0.428 5.428 5 C -0.353 4.353 6 H 0.104 0.896 7 C 0.008 3.992 8 N -0.866 5.866 9 Si 0.980 3.020 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.258 1.258 13 C 0.518 3.482 14 O -0.614 6.614 15 C -0.057 4.057 16 C -0.152 4.152 17 C -0.188 4.188 18 C 0.011 3.989 19 C -0.041 4.041 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.075 4.075 23 C -0.083 4.083 24 C -0.147 4.147 25 C -0.112 4.112 26 C -0.090 4.090 27 O -0.144 6.144 28 H 0.234 0.766 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.274 0.726 32 H 0.164 0.836 33 H 0.192 0.808 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.162 0.838 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.010 -11.488 13.803 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.146 4.146 3 C 0.121 3.879 4 N -0.143 5.143 5 C -0.480 4.480 6 H 0.121 0.879 7 C -0.197 4.197 8 N -0.501 5.501 9 Si 0.803 3.197 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.182 1.182 13 C 0.309 3.691 14 O -0.504 6.504 15 C -0.110 4.110 16 C -0.173 4.173 17 C -0.207 4.207 18 C -0.042 4.042 19 C -0.042 4.042 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.075 4.075 23 C -0.120 4.120 24 C -0.204 4.204 25 C -0.130 4.130 26 C -0.108 4.108 27 O -0.038 6.038 28 H 0.250 0.750 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.182 0.818 33 H 0.209 0.791 34 H 0.122 0.878 35 H 0.152 0.848 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.179 0.821 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.789 -11.088 13.427 18.690 hybrid contribution -0.440 0.982 0.137 1.085 sum 6.349 -10.106 13.564 18.067 Atomic orbital electron populations 1.25029 0.96252 1.01432 1.04195 1.23237 0.94898 0.99390 0.97071 1.18041 0.85001 0.92539 0.92287 1.43707 1.53724 1.04493 1.12383 1.19956 1.16570 1.21718 0.89727 0.87886 1.26324 0.94132 0.96818 1.02463 1.70077 1.16026 1.24697 1.39315 0.85127 0.78055 0.79074 0.77445 1.19019 1.20580 1.18164 1.17233 0.83345 0.81936 0.86574 1.90674 1.59444 1.82118 1.18149 1.22485 1.09513 0.96042 0.82986 1.22185 1.03316 0.90846 1.00972 1.21897 1.06582 1.01175 0.91016 1.21507 1.04040 0.83796 0.94841 1.17979 1.03209 0.95472 0.87505 1.21414 0.99418 0.98207 0.94927 1.21123 1.00259 0.98241 0.94504 1.20393 0.97341 0.92429 0.97345 1.20629 0.98479 1.03815 0.89066 1.21756 0.97226 1.01721 0.99723 1.21289 0.99399 1.00031 0.92254 1.21346 0.97890 0.94556 0.96990 1.84551 1.64667 1.31719 1.22910 0.74990 0.88658 0.90709 0.91578 0.81812 0.79069 0.87828 0.84779 0.90409 0.88933 0.93681 0.90803 0.92412 0.82075 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.50 19.15 74.32 1.42 -10.08 16 2 C -0.14 -7.36 11.05 31.13 0.34 -7.02 16 3 C 0.24 12.37 5.10 84.58 0.43 12.80 16 4 N -0.43 -23.15 2.56 -650.31 -1.66 -24.82 16 5 C -0.35 -18.73 8.13 84.11 0.68 -18.05 16 6 H 0.10 5.46 5.74 -2.91 -0.02 5.44 16 7 C 0.01 0.43 5.16 84.95 0.44 0.86 16 8 N -0.87 -45.60 9.32 21.68 0.20 -45.40 16 9 Si 0.98 40.17 29.56 68.60 2.03 42.20 16 10 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 11 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 12 H -0.26 -10.18 6.71 99.48 0.67 -9.51 16 13 C 0.52 28.02 7.51 86.36 0.65 28.66 16 14 O -0.61 -34.79 16.54 -4.60 -0.08 -34.87 16 15 C -0.06 -2.76 6.85 24.31 0.17 -2.60 16 16 C -0.15 -6.02 10.66 22.57 0.24 -5.78 16 17 C -0.19 -6.14 10.21 22.26 0.23 -5.91 16 18 C 0.01 0.40 7.02 24.38 0.17 0.57 16 19 C -0.04 -1.30 5.87 -20.10 -0.12 -1.41 16 20 C -0.12 -3.92 9.72 22.54 0.22 -3.70 16 21 C -0.12 -3.09 9.68 22.23 0.22 -2.87 16 22 C -0.08 -1.46 5.14 -19.80 -0.10 -1.56 16 23 C -0.08 -1.08 6.06 29.85 0.18 -0.90 16 24 C -0.15 -1.83 9.89 71.98 0.71 -1.12 16 25 C -0.11 -2.02 9.68 22.23 0.22 -1.81 16 26 C -0.09 -2.02 9.56 22.54 0.22 -1.81 16 27 O -0.14 -6.64 7.21 -9.99 -0.07 -6.71 16 28 H 0.23 8.41 7.80 -4.42 -0.03 8.37 16 29 H 0.10 4.79 7.17 -2.39 -0.02 4.77 16 30 H 0.07 3.64 7.56 -2.39 -0.02 3.62 16 31 H 0.27 13.70 8.31 -92.70 -0.77 12.93 16 32 H 0.16 5.94 8.06 -2.91 -0.02 5.92 16 33 H 0.19 4.29 7.23 -2.91 -0.02 4.27 16 34 H 0.10 3.89 7.50 -2.91 -0.02 3.87 16 35 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 37 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 38 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.15 2.57 6.96 -2.91 -0.02 2.55 16 Total: -1.00 -68.78 365.58 7.73 -61.06 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.99 Total: 30.24 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 6.31 Total: -21.70 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -1.46 Total: -70.22 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.15 Total: -41.58 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -68.78 7.73 -61.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490971875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.223 kcal (2) G-P(sol) polarization free energy of solvation -68.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds