Wall clock time and date at job start Tue Mar 31 2020 13:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47316 * 236.91233 * 3 2 1 5 5 C 1.36808 * 119.99960 * 263.55658 * 4 3 2 6 6 H 1.08000 * 120.00030 * 200.16675 * 5 4 3 7 7 C 1.39043 * 119.99992 * 20.15494 * 5 4 3 8 8 N 1.31377 * 119.99860 * 21.66317 * 7 5 4 9 9 Si 1.86798 * 120.00102 * 201.65716 * 7 5 4 10 10 H 1.48500 * 109.46997 * 60.00547 * 9 7 5 11 11 H 1.48503 * 109.46943 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47059 * 300.00511 * 9 7 5 13 13 C 1.34776 * 120.00331 * 83.82733 * 4 3 2 14 14 O 1.21825 * 119.99874 * 180.02562 * 13 4 3 15 15 C 1.41432 * 119.99658 * 0.02562 * 13 4 3 16 16 C 1.35476 * 120.00014 * 180.02562 * 15 13 4 17 17 C 1.46491 * 120.00005 * 180.02562 * 16 15 13 18 18 C 1.36409 * 127.16190 * 129.71054 * 17 16 15 19 19 C 1.50703 * 125.11766 * 359.97438 * 18 17 16 20 20 C 1.53007 * 109.46604 * 90.00744 * 19 18 17 21 21 O 1.33913 * 109.76805 * 179.82826 * 18 17 16 22 22 C 1.34927 * 111.37193 * 0.45472 * 21 18 17 23 23 C 1.38967 * 133.04953 * 179.75235 * 22 21 18 24 24 C 1.37854 * 119.97801 * 179.97438 * 23 22 21 25 25 C 1.38678 * 120.64931 * 359.97438 * 24 23 22 26 26 C 1.37858 * 120.19461 * 359.97438 * 25 24 23 27 27 C 1.39092 * 119.63342 * 0.02562 * 26 25 24 28 28 H 4.40638 * 5.51473 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47527 * 116.91350 * 3 2 1 30 30 H 1.08996 * 109.47878 * 356.91082 * 3 2 1 31 31 H 0.97006 * 120.00306 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.00200 * 359.97438 * 15 13 4 33 33 H 1.08000 * 119.99786 * 359.97438 * 16 15 13 34 34 H 1.08997 * 109.47569 * 209.99962 * 19 18 17 35 35 H 1.08998 * 109.47180 * 330.01239 * 19 18 17 36 36 H 1.08996 * 109.47097 * 180.02562 * 20 19 18 37 37 H 1.09009 * 109.46871 * 299.99795 * 20 19 18 38 38 H 1.08999 * 109.47078 * 59.99817 * 20 19 18 39 39 H 1.08000 * 120.01159 * 359.97438 * 23 22 21 40 40 H 1.07998 * 119.67635 * 179.97438 * 24 23 22 41 41 H 1.08001 * 119.90403 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.18559 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7549 1.1572 5 6 3.4868 2.0693 1.0177 6 1 4.1352 2.5346 1.7454 7 6 3.0108 2.8062 -0.0611 8 7 1.9268 2.4186 -0.6941 9 14 3.9126 4.3471 -0.6103 10 1 5.3013 3.9952 -1.0012 11 1 3.2074 4.9457 -1.7721 12 1 3.9455 5.3258 0.5061 13 6 3.2406 0.1525 2.3581 14 8 3.6460 0.7799 3.3205 15 6 2.8818 -1.2081 2.5010 16 6 2.9885 -1.8136 3.7082 17 6 2.6174 -3.2230 3.8560 18 6 3.3577 -4.2141 4.4309 19 6 4.7273 -4.0348 5.0334 20 6 4.5900 -3.6814 6.5158 21 8 2.6829 -5.3698 4.3821 22 6 1.4872 -5.2158 3.7763 23 6 0.4511 -6.0949 3.4852 24 6 -0.6792 -5.6385 2.8413 25 6 -0.7963 -4.3051 2.4787 26 6 0.2208 -3.4181 2.7601 27 6 1.3656 -3.8680 3.4094 28 1 -1.0501 0.0001 -0.0002 29 1 3.0092 0.4660 -0.9163 30 1 3.0099 -1.0253 0.0554 31 1 1.5944 2.9329 -1.4465 32 1 2.5221 -1.7642 1.6479 33 1 3.3479 -1.2575 4.5614 34 1 5.2932 -4.9607 4.9317 35 1 5.2498 -3.2307 4.5152 36 1 5.5805 -3.5513 6.9516 37 1 4.0241 -2.7553 6.6176 38 1 4.0674 -4.4855 7.0340 39 1 0.5312 -7.1354 3.7633 40 1 -1.4813 -6.3260 2.6171 41 1 -1.6870 -3.9605 1.9743 42 1 0.1292 -2.3796 2.4779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490994165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:58 Heat of formation + Delta-G solvation = 60.680113 kcal Electronic energy + Delta-G solvation = -26310.669357 eV Core-core repulsion = 22610.089219 eV Total energy + Delta-G solvation = -3700.580138 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.49091 -40.72111 -38.84832 -37.27568 -36.09283 -34.39201 -33.95606 -33.07249 -32.14517 -31.26677 -29.58976 -28.34074 -27.10534 -25.33954 -24.39648 -23.76407 -22.20449 -21.21886 -19.96611 -19.64162 -18.76474 -18.32882 -17.80291 -17.52909 -17.26952 -16.66822 -16.41719 -16.08840 -15.83339 -15.30882 -15.11272 -14.82303 -14.75206 -14.35767 -14.30231 -14.11941 -14.02293 -13.55310 -13.49344 -13.09290 -13.06890 -12.82006 -12.72532 -12.55476 -12.51639 -12.16958 -12.06544 -11.84481 -11.29956 -11.18565 -11.12543 -10.71947 -10.43204 -10.24255 -9.86735 -9.59866 -8.91194 -8.38528 -5.94880 -0.25782 0.22080 0.39594 1.32118 1.41763 1.46091 1.52113 1.62075 2.02439 2.28897 2.36764 2.50491 2.75466 3.09889 3.23494 3.34596 3.59710 3.84386 3.94798 3.99038 4.08291 4.16766 4.19324 4.27398 4.33140 4.36777 4.51630 4.56866 4.62826 4.68480 4.84974 4.89495 4.96503 5.02342 5.19584 5.23586 5.31351 5.34140 5.35335 5.37965 5.41720 5.47616 5.54623 5.72922 6.05093 6.16160 6.42087 7.09410 7.12446 7.34077 7.96006 8.59341 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.003725 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.186505 B = 7515.757254 C = 9124.008515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.157 4.157 3 C 0.233 3.767 4 N -0.435 5.435 5 C -0.353 4.353 6 H 0.078 0.922 7 C 0.005 3.995 8 N -0.862 5.862 9 Si 0.988 3.012 10 H -0.264 1.264 11 H -0.270 1.270 12 H -0.278 1.278 13 C 0.460 3.540 14 O -0.641 6.641 15 C -0.181 4.181 16 C -0.007 4.007 17 C -0.182 4.182 18 C 0.064 3.936 19 C -0.050 4.050 20 C -0.147 4.147 21 O -0.190 6.190 22 C 0.027 3.973 23 C -0.106 4.106 24 C -0.089 4.089 25 C -0.128 4.128 26 C -0.094 4.094 27 C -0.133 4.133 28 H 0.235 0.765 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.276 0.724 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.159 0.841 40 H 0.175 0.825 41 H 0.153 0.847 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.922 -18.710 4.331 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.159 4.159 3 C 0.111 3.889 4 N -0.150 5.150 5 C -0.481 4.481 6 H 0.096 0.904 7 C -0.200 4.200 8 N -0.497 5.497 9 Si 0.811 3.189 10 H -0.189 1.189 11 H -0.195 1.195 12 H -0.203 1.203 13 C 0.255 3.745 14 O -0.532 6.532 15 C -0.201 4.201 16 C -0.029 4.029 17 C -0.184 4.184 18 C 0.016 3.984 19 C -0.087 4.087 20 C -0.204 4.204 21 O -0.091 6.091 22 C -0.019 4.019 23 C -0.124 4.124 24 C -0.106 4.106 25 C -0.145 4.145 26 C -0.112 4.112 27 C -0.134 4.134 28 H 0.251 0.749 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.128 0.872 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.177 0.823 40 H 0.192 0.808 41 H 0.171 0.829 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.746 -18.561 4.645 19.329 hybrid contribution 0.011 1.579 -0.461 1.645 sum -2.735 -16.982 4.184 17.702 Atomic orbital electron populations 1.25108 0.96254 1.03576 1.00575 1.23297 0.94834 0.97663 1.00074 1.18293 0.85070 0.95081 0.90491 1.43847 1.53925 1.10354 1.06903 1.19606 1.29177 0.87628 1.11643 0.90399 1.26096 0.95237 1.01932 0.96701 1.70157 1.17646 1.40974 1.20963 0.85096 0.78792 0.77294 0.77763 1.18916 1.19482 1.20348 1.17356 0.85308 0.89169 0.82687 1.90602 1.54601 1.68835 1.39139 1.21941 1.05036 0.93998 0.99165 1.21326 0.94447 0.90527 0.96572 1.19760 0.95833 0.93757 1.09027 1.23228 0.95715 0.81705 0.97795 1.20449 0.86360 1.04959 0.96888 1.21772 1.03799 1.01684 0.93145 1.83758 1.26414 1.33756 1.65187 1.19952 0.87202 0.94989 0.99806 1.20377 0.90546 0.99677 1.01840 1.21372 0.97135 0.95873 0.96233 1.21414 0.98912 0.93617 1.00599 1.20694 0.92427 1.00387 0.97724 1.19944 0.95945 0.93803 1.03664 0.74876 0.88893 0.89098 0.91431 0.85769 0.85939 0.87162 0.88388 0.89107 0.93463 0.91772 0.82328 0.80787 0.82913 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.51 19.25 74.32 1.43 -8.07 16 2 C -0.16 -7.08 11.08 31.12 0.34 -6.74 16 3 C 0.23 10.69 4.78 84.57 0.40 11.09 16 4 N -0.44 -23.28 2.59 -655.68 -1.70 -24.97 16 5 C -0.35 -20.27 9.26 84.11 0.78 -19.49 16 6 H 0.08 4.79 7.42 -2.91 -0.02 4.77 16 7 C 0.01 0.29 4.83 84.95 0.41 0.70 16 8 N -0.86 -45.00 9.61 21.68 0.21 -44.79 16 9 Si 0.99 41.81 29.61 68.60 2.03 43.84 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 11 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 13 C 0.46 24.35 7.33 85.03 0.62 24.97 16 14 O -0.64 -38.38 15.77 -4.75 -0.07 -38.45 16 15 C -0.18 -7.75 8.57 22.42 0.19 -7.56 16 16 C -0.01 -0.27 9.12 23.78 0.22 -0.06 16 17 C -0.18 -6.03 5.98 -19.04 -0.11 -6.15 16 18 C 0.06 1.78 6.57 25.26 0.17 1.95 16 19 C -0.05 -1.02 6.26 29.85 0.19 -0.83 16 20 C -0.15 -2.69 9.89 71.98 0.71 -1.98 16 21 O -0.19 -5.22 10.53 -5.01 -0.05 -5.27 16 22 C 0.03 0.74 7.38 22.93 0.17 0.91 16 23 C -0.11 -2.13 10.06 22.35 0.22 -1.90 16 24 C -0.09 -1.52 10.01 22.28 0.22 -1.29 16 25 C -0.13 -2.74 10.04 22.28 0.22 -2.52 16 26 C -0.09 -2.77 10.09 22.38 0.23 -2.54 16 27 C -0.13 -4.20 6.34 -20.08 -0.13 -4.33 16 28 H 0.23 7.21 7.80 -4.41 -0.03 7.18 16 29 H 0.09 4.42 6.60 -2.39 -0.02 4.41 16 30 H 0.09 3.57 6.45 -2.39 -0.02 3.55 16 31 H 0.28 13.53 8.31 -92.70 -0.77 12.76 16 32 H 0.12 4.96 6.06 -2.91 -0.02 4.94 16 33 H 0.12 4.91 7.45 -2.91 -0.02 4.88 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.10 2.12 7.87 -2.39 -0.02 2.10 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 41 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 42 H 0.11 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -73.39 369.05 7.74 -65.65 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 1.03 Total: 27.85 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 6.29 Total: -23.84 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -1.49 Total: -69.77 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.13 Total: -43.72 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -73.39 7.74 -65.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490994165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.326 kcal (2) G-P(sol) polarization free energy of solvation -73.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds