Wall clock time and date at job start Tue Mar 31 2020 14:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46922 * 2 1 4 4 C 1.53006 * 109.46914 * 240.00363 * 2 1 3 5 5 C 1.50707 * 109.46904 * 59.99553 * 4 2 1 6 6 H 1.07997 * 119.99950 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99689 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00197 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99943 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47275 * 59.99719 * 9 7 5 11 11 H 1.48494 * 109.46963 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46791 * 299.99915 * 9 7 5 13 13 C 1.52993 * 109.47483 * 120.00536 * 2 1 3 14 14 N 1.46503 * 109.47010 * 299.99948 * 13 2 1 15 15 C 1.34777 * 120.00262 * 180.02562 * 14 13 2 16 16 O 1.21802 * 119.99620 * 359.97438 * 15 14 13 17 17 C 1.41274 * 120.00051 * 179.97438 * 15 14 13 18 18 C 1.35115 * 119.99705 * 179.97438 * 17 15 14 19 19 S 1.76193 * 120.00150 * 0.02562 * 18 17 15 20 20 C 1.81002 * 100.00049 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47156 * 180.02562 * 20 19 18 22 22 C 1.34518 * 125.78832 * 89.71552 * 21 20 19 23 23 C 1.41377 * 106.83972 * 179.88997 * 22 21 20 24 24 C 1.34513 * 106.84156 * 0.37021 * 23 22 21 25 25 O 1.34300 * 125.78840 * 270.02634 * 21 20 19 26 26 H 1.09000 * 109.46546 * 299.99402 * 1 2 3 27 27 H 1.09000 * 109.47489 * 59.99662 * 1 2 3 28 28 H 1.08998 * 109.46654 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46955 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47541 * 299.99942 * 3 2 1 31 31 H 1.08997 * 109.47275 * 60.00423 * 3 2 1 32 32 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 33 33 H 1.08999 * 109.47113 * 300.00164 * 4 2 1 34 34 H 0.96999 * 120.00318 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47185 * 179.97438 * 13 2 1 36 36 H 1.09002 * 109.47442 * 59.99619 * 13 2 1 37 37 H 0.97002 * 119.99703 * 359.97438 * 14 13 2 38 38 H 1.07994 * 120.00194 * 0.02562 * 17 15 14 39 39 H 1.08005 * 119.99823 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.47115 * 60.00094 * 20 19 18 41 41 H 1.09001 * 109.46925 * 300.00251 * 20 19 18 42 42 H 1.08007 * 126.57748 * 0.02871 * 22 21 20 43 43 H 1.07997 * 126.57885 * 180.16682 * 23 22 21 44 44 H 1.08002 * 125.78655 * 179.74823 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5375 -0.0107 -2.4798 6 1 0.9169 0.8676 -2.3806 7 6 1.8710 -0.4814 -3.7321 8 7 2.6280 -1.5501 -3.8529 9 14 1.2488 0.3996 -5.2572 10 1 1.7437 1.7997 -5.2567 11 1 1.7436 -0.3004 -6.4697 12 1 -0.2363 0.3996 -5.2576 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0308 2.4454 15 6 1.8779 -0.4910 3.6694 16 8 2.5782 -1.4813 3.7811 17 6 1.4074 0.1752 4.8230 18 6 1.7339 -0.2865 6.0501 19 16 2.7469 -1.7190 6.2116 20 6 2.8339 -1.8407 8.0155 21 6 3.6760 -3.0303 8.3987 22 6 5.0071 -3.0220 8.5930 23 6 5.3789 -4.3417 8.9379 24 6 4.2540 -5.0792 8.9257 25 8 3.2258 -4.2797 8.5983 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7208 -1.2496 33 1 1.6767 -1.7488 -1.2494 34 1 2.8623 -1.8814 -4.7339 35 1 3.1301 -0.7217 1.2488 36 1 1.6768 -1.7490 1.2491 37 1 0.9944 0.7581 2.3564 38 1 0.7862 1.0530 4.7240 39 1 1.3739 0.2226 6.9320 40 1 1.8291 -1.9608 8.4204 41 1 3.2824 -0.9331 8.4196 42 1 5.6651 -2.1700 8.5049 43 1 6.3753 -4.6913 9.1643 44 1 4.1890 -6.1354 9.1420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492800275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:59 Heat of formation + Delta-G solvation = -13.150571 kcal Electronic energy + Delta-G solvation = -23700.821460 eV Core-core repulsion = 20132.483735 eV Total energy + Delta-G solvation = -3568.337725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.80782 -39.80473 -37.19618 -33.61598 -33.44613 -33.02552 -32.19855 -32.01432 -27.30186 -27.04837 -26.49562 -26.45517 -23.86256 -22.29848 -22.02597 -20.91297 -19.95699 -18.48950 -17.60637 -17.50344 -16.64546 -16.34582 -15.91420 -15.11898 -15.02924 -14.95495 -14.74061 -14.44268 -14.20001 -13.60489 -13.48155 -13.10488 -13.08921 -13.00298 -12.72920 -12.54371 -12.18413 -12.11486 -12.03126 -11.16954 -10.99552 -10.98781 -10.84699 -10.65130 -10.58607 -10.38295 -10.25308 -10.18536 -9.85665 -9.43256 -9.13666 -8.91837 -8.77354 -8.55713 -8.34379 -7.63068 -5.98382 -3.99787 0.95059 0.96417 1.81848 2.21361 2.50285 2.69261 3.32831 3.38281 3.39271 3.44078 3.65283 4.26658 4.46281 4.57316 4.73119 4.75121 4.90204 5.02170 5.24293 5.36849 5.48327 5.52989 5.63835 5.65342 5.72077 5.74079 5.79532 5.80270 6.19153 6.20652 6.25238 6.33558 6.42028 6.59708 6.64409 6.79619 6.84065 7.07967 7.09196 7.14758 7.65582 7.78417 7.78455 8.00256 8.40571 8.44469 9.04804 9.63105 11.12999 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.002015 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.736833 B =13894.991266 C =14633.349696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.714 5.714 15 C 0.530 3.470 16 O -0.525 6.525 17 C -0.209 4.209 18 C -0.110 4.110 19 S 0.059 5.941 20 C -0.113 4.113 21 C 0.004 3.996 22 C -0.193 4.193 23 C -0.214 4.214 24 C -0.036 4.036 25 O -0.172 6.172 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.399 0.601 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 1.212 27.144 27.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.365 5.365 15 C 0.320 3.680 16 O -0.408 6.408 17 C -0.246 4.246 18 C -0.246 4.246 19 S 0.306 5.694 20 C -0.259 4.259 21 C -0.047 4.047 22 C -0.215 4.215 23 C -0.233 4.233 24 C -0.104 4.104 25 O -0.069 6.069 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.234 0.766 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.168 0.832 43 H 0.168 0.832 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.488 -0.455 26.312 26.320 hybrid contribution -1.001 1.756 0.022 2.022 sum -0.513 1.301 26.333 26.370 Atomic orbital electron populations 1.21762 0.95308 1.01167 1.00191 1.20902 0.95444 0.95841 0.95135 1.21759 1.00553 0.95917 1.00192 1.19088 0.96355 0.95222 0.89471 1.21147 1.31226 1.12064 0.90541 0.92328 1.25020 0.95337 0.95107 0.99084 1.69954 1.36837 1.23042 1.23534 0.86705 0.79120 0.79752 0.82673 1.20343 1.21418 1.20347 1.21613 0.98916 0.96017 0.82923 1.46040 1.52895 1.31738 1.05822 1.17119 0.81612 0.84930 0.84378 1.90639 1.38871 1.26675 1.84611 1.21531 1.07152 1.03993 0.91903 1.26050 0.98717 0.99311 1.00541 1.88297 1.57124 1.28231 0.95717 1.22676 1.02492 0.95561 1.05176 1.21309 0.93367 0.84193 1.05801 1.21611 0.94241 0.98870 1.06754 1.21850 0.99913 0.93755 1.07768 1.24085 0.85033 0.96784 1.04539 1.84018 1.37018 1.18071 1.67745 0.95235 0.91475 0.93370 0.93371 0.91477 0.95235 0.96343 0.96345 0.92986 0.91784 0.91791 0.76569 0.84448 0.83918 0.88248 0.87176 0.83205 0.83236 0.77902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.22 8.05 37.15 0.30 -1.92 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.61 7.65 -34.44 -0.26 -13.87 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.13 2.29 4.56 -4.04 -0.02 2.27 16 14 N -0.71 -10.38 4.95 -63.32 -0.31 -10.69 16 15 C 0.53 7.90 7.53 -15.11 -0.11 7.79 16 16 O -0.52 -9.64 13.33 5.10 0.07 -9.57 16 17 C -0.21 -2.27 9.82 -39.54 -0.39 -2.66 16 18 C -0.11 -1.07 10.08 29.62 0.30 -0.77 16 19 S 0.06 0.72 18.59 -107.50 -2.00 -1.27 16 20 C -0.11 -0.98 6.20 36.01 0.22 -0.76 16 21 C 0.00 0.05 6.58 -35.62 -0.23 -0.19 16 22 C -0.19 -1.89 10.81 -39.70 -0.43 -2.32 16 23 C -0.21 -1.88 10.91 -39.70 -0.43 -2.31 16 24 C -0.04 -0.31 12.09 29.42 0.36 0.05 16 25 O -0.17 -1.91 10.65 5.70 0.06 -1.85 16 26 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 27 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 31 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.40 4.83 6.12 -40.82 -0.25 4.58 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 0.84 8.03 -52.48 -0.42 0.42 16 40 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.11 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 43 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -32.89 376.50 -8.07 -40.96 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.58 Total: 2.17 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -0.70 Total: -15.85 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.42 Total: -36.48 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.13 Total: -11.42 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.00 Total: -1.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.89 -8.07 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492800275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.811 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds