Wall clock time and date at job start Tue Mar 31 2020 14:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46922 * 2 1 4 4 C 1.53006 * 109.46914 * 240.00363 * 2 1 3 5 5 C 1.50707 * 109.46904 * 59.99553 * 4 2 1 6 6 H 1.07997 * 119.99950 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99689 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00197 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99943 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47275 * 59.99719 * 9 7 5 11 11 H 1.48494 * 109.46963 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46791 * 299.99915 * 9 7 5 13 13 C 1.52993 * 109.47483 * 120.00536 * 2 1 3 14 14 N 1.46503 * 109.47010 * 299.99948 * 13 2 1 15 15 C 1.34777 * 120.00262 * 180.02562 * 14 13 2 16 16 O 1.21802 * 119.99620 * 359.97438 * 15 14 13 17 17 C 1.41274 * 120.00051 * 179.97438 * 15 14 13 18 18 C 1.35115 * 119.99705 * 179.97438 * 17 15 14 19 19 S 1.76193 * 120.00150 * 0.02562 * 18 17 15 20 20 C 1.81002 * 100.00049 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47156 * 180.02562 * 20 19 18 22 22 C 1.34518 * 125.78832 * 89.71552 * 21 20 19 23 23 C 1.41377 * 106.83972 * 179.88997 * 22 21 20 24 24 C 1.34513 * 106.84156 * 0.37021 * 23 22 21 25 25 O 1.34300 * 125.78840 * 270.02634 * 21 20 19 26 26 H 1.09000 * 109.46546 * 299.99402 * 1 2 3 27 27 H 1.09000 * 109.47489 * 59.99662 * 1 2 3 28 28 H 1.08998 * 109.46654 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46955 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47541 * 299.99942 * 3 2 1 31 31 H 1.08997 * 109.47275 * 60.00423 * 3 2 1 32 32 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 33 33 H 1.08999 * 109.47113 * 300.00164 * 4 2 1 34 34 H 0.96999 * 120.00318 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47185 * 179.97438 * 13 2 1 36 36 H 1.09002 * 109.47442 * 59.99619 * 13 2 1 37 37 H 0.97002 * 119.99703 * 359.97438 * 14 13 2 38 38 H 1.07994 * 120.00194 * 0.02562 * 17 15 14 39 39 H 1.08005 * 119.99823 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.47115 * 60.00094 * 20 19 18 41 41 H 1.09001 * 109.46925 * 300.00251 * 20 19 18 42 42 H 1.08007 * 126.57748 * 0.02871 * 22 21 20 43 43 H 1.07997 * 126.57885 * 180.16682 * 23 22 21 44 44 H 1.08002 * 125.78655 * 179.74823 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5375 -0.0107 -2.4798 6 1 0.9169 0.8676 -2.3806 7 6 1.8710 -0.4814 -3.7321 8 7 2.6280 -1.5501 -3.8529 9 14 1.2488 0.3996 -5.2572 10 1 1.7437 1.7997 -5.2567 11 1 1.7436 -0.3004 -6.4697 12 1 -0.2363 0.3996 -5.2576 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0308 2.4454 15 6 1.8779 -0.4910 3.6694 16 8 2.5782 -1.4813 3.7811 17 6 1.4074 0.1752 4.8230 18 6 1.7339 -0.2865 6.0501 19 16 2.7469 -1.7190 6.2116 20 6 2.8339 -1.8407 8.0155 21 6 3.6760 -3.0303 8.3987 22 6 5.0071 -3.0220 8.5930 23 6 5.3789 -4.3417 8.9379 24 6 4.2540 -5.0792 8.9257 25 8 3.2258 -4.2797 8.5983 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7208 -1.2496 33 1 1.6767 -1.7488 -1.2494 34 1 2.8623 -1.8814 -4.7339 35 1 3.1301 -0.7217 1.2488 36 1 1.6768 -1.7490 1.2491 37 1 0.9944 0.7581 2.3564 38 1 0.7862 1.0530 4.7240 39 1 1.3739 0.2226 6.9320 40 1 1.8291 -1.9608 8.4204 41 1 3.2824 -0.9331 8.4196 42 1 5.6651 -2.1700 8.5049 43 1 6.3753 -4.6913 9.1643 44 1 4.1890 -6.1354 9.1420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492800275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:58 Heat of formation + Delta-G solvation = -33.168091 kcal Electronic energy + Delta-G solvation = -23701.689485 eV Core-core repulsion = 20132.483735 eV Total energy + Delta-G solvation = -3569.205750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.51057 -41.00195 -38.72252 -35.22390 -34.19216 -34.07620 -33.65400 -32.87047 -29.15891 -28.05323 -27.94437 -27.60839 -25.40762 -23.76962 -22.72774 -21.72133 -20.98890 -19.83451 -18.74981 -18.36520 -18.28366 -17.42280 -17.03194 -16.47988 -16.37008 -16.05467 -15.74818 -15.56872 -15.15515 -14.87138 -14.68554 -14.58467 -14.17275 -13.92465 -13.79115 -13.78086 -13.65834 -13.25682 -12.87012 -12.82945 -12.74846 -12.57554 -12.31632 -12.21498 -11.99192 -11.92270 -11.54344 -11.44056 -11.00285 -10.90045 -10.85886 -10.50250 -10.29058 -10.06502 -9.29961 -8.56042 -8.13147 -6.21357 0.11419 0.20051 1.09846 1.42777 1.45283 1.48273 1.52475 1.80634 2.05297 2.39062 2.41931 2.52714 3.20852 3.63375 3.95130 4.00580 4.04593 4.09862 4.10572 4.24685 4.29091 4.41575 4.51270 4.70514 4.74720 4.78734 4.88211 4.94013 4.97431 4.98618 5.04387 5.13466 5.13826 5.15647 5.43015 5.50368 5.51141 5.55258 5.55811 5.60795 5.81679 5.90520 6.14333 6.30937 6.68586 6.93817 7.34161 7.46316 8.99211 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.002015 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.736833 B =13894.991266 C =14633.349696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.145 3.855 14 N -0.705 5.705 15 C 0.522 3.478 16 O -0.569 6.569 17 C -0.222 4.222 18 C -0.081 4.081 19 S -0.031 6.031 20 C -0.089 4.089 21 C -0.021 4.021 22 C -0.203 4.203 23 C -0.229 4.229 24 C -0.039 4.039 25 O -0.194 6.194 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.072 0.928 32 H -0.016 1.016 33 H -0.016 1.016 34 H 0.259 0.741 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.414 0.586 38 H 0.180 0.820 39 H 0.190 0.810 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.161 0.839 43 H 0.170 0.830 44 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 3.749 29.294 29.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.205 4.205 8 N -0.580 5.580 9 Si 0.786 3.214 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.191 1.191 13 C 0.020 3.980 14 N -0.357 5.357 15 C 0.314 3.686 16 O -0.455 6.455 17 C -0.257 4.257 18 C -0.216 4.216 19 S 0.216 5.784 20 C -0.235 4.235 21 C -0.071 4.071 22 C -0.225 4.225 23 C -0.247 4.247 24 C -0.107 4.107 25 O -0.091 6.091 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.252 0.748 38 H 0.197 0.803 39 H 0.207 0.793 40 H 0.133 0.867 41 H 0.154 0.846 42 H 0.178 0.822 43 H 0.187 0.813 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -1.228 2.129 28.473 28.579 hybrid contribution -0.388 0.854 -0.503 1.064 sum -1.616 2.983 27.970 28.175 Atomic orbital electron populations 1.21692 0.93531 1.00869 1.01739 1.20702 0.96734 0.96326 0.92738 1.21688 0.99809 0.94578 1.01742 1.18976 0.94172 0.94145 0.92523 1.21568 1.30460 1.12108 0.91033 0.90827 1.25993 0.95696 0.95916 1.02850 1.70124 1.38730 1.25054 1.24139 0.85563 0.78957 0.78736 0.78164 1.19058 1.21776 1.19090 1.21120 0.97492 0.95195 0.84200 1.45809 1.53197 1.32026 1.04710 1.17861 0.80914 0.84563 0.85294 1.90670 1.40642 1.28628 1.85512 1.21641 1.08465 1.05335 0.90249 1.26357 0.96320 0.97081 1.01885 1.88675 1.58619 1.30958 1.00135 1.22595 1.03460 0.96001 1.01399 1.21710 0.94070 0.84616 1.06730 1.21946 0.94422 0.99813 1.06357 1.22212 1.01062 0.93550 1.07919 1.24837 0.84516 0.98012 1.03322 1.84007 1.38173 1.18653 1.68226 0.90928 0.92546 0.94665 0.94623 0.92556 0.90917 0.99768 0.99802 0.93195 0.94007 0.94081 0.74762 0.80331 0.79326 0.86745 0.84628 0.82161 0.81293 0.74695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 2 C -0.06 -2.47 0.54 -52.18 -0.03 -2.50 16 3 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 4 C 0.04 2.04 4.04 29.85 0.12 2.17 16 5 C -0.51 -27.79 7.65 25.60 0.20 -27.60 16 6 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 8 N -0.94 -57.89 13.29 21.45 0.28 -57.60 16 9 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 13 C 0.14 5.31 4.56 86.38 0.39 5.71 16 14 N -0.71 -19.54 4.95 -472.43 -2.34 -21.88 16 15 C 0.52 15.06 7.53 84.99 0.64 15.70 16 16 O -0.57 -21.49 13.33 -4.68 -0.06 -21.55 16 17 C -0.22 -4.10 9.82 22.30 0.22 -3.88 16 18 C -0.08 -1.31 10.08 67.10 0.68 -0.63 16 19 S -0.03 -0.75 18.59 -56.49 -1.05 -1.80 16 20 C -0.09 -1.38 6.20 71.24 0.44 -0.94 16 21 C -0.02 -0.42 6.58 24.83 0.16 -0.26 16 22 C -0.20 -3.86 10.81 22.19 0.24 -3.62 16 23 C -0.23 -3.82 10.91 22.19 0.24 -3.58 16 24 C -0.04 -0.63 12.09 66.97 0.81 0.18 16 25 O -0.19 -4.21 10.65 -2.50 -0.03 -4.24 16 26 H 0.07 1.82 6.86 -2.39 -0.02 1.80 16 27 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 2.02 6.62 -2.39 -0.02 2.01 16 31 H 0.07 1.81 6.86 -2.39 -0.02 1.79 16 32 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 33 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.41 8.60 6.12 -92.71 -0.57 8.04 16 38 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.19 1.22 8.03 -2.91 -0.02 1.20 16 40 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 44 H 0.24 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -77.22 376.50 5.00 -72.22 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.43 Total: 15.18 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 5.74 Total: -26.23 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.05 Total: -79.48 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.09 Total: -25.79 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -0.75 SS G_CDS: -1.05 Total: -1.80 kcal Total: -77.22 5.00 -72.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492800275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.047 kcal (2) G-P(sol) polarization free energy of solvation -77.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds