Wall clock time and date at job start Tue Mar 31 2020 14:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47145 * 2 1 4 4 C 1.53005 * 109.47009 * 239.99951 * 2 1 3 5 5 C 1.50703 * 109.46794 * 60.00134 * 4 2 1 6 6 H 1.08002 * 120.00242 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99654 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99845 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99737 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47488 * 89.99821 * 9 7 5 11 11 H 1.48502 * 109.46660 * 209.99707 * 9 7 5 12 12 H 1.48499 * 109.47222 * 329.99226 * 9 7 5 13 13 C 1.53001 * 109.46898 * 120.00305 * 2 1 3 14 14 N 1.46496 * 109.46996 * 299.99786 * 13 2 1 15 15 C 1.34779 * 120.00057 * 180.02562 * 14 13 2 16 16 O 1.21795 * 119.99817 * 0.02562 * 15 14 13 17 17 C 1.41276 * 119.99718 * 179.97438 * 15 14 13 18 18 C 1.35113 * 119.99436 * 179.97438 * 17 15 14 19 19 S 1.76202 * 119.99843 * 180.02562 * 18 17 15 20 20 C 1.81003 * 100.00119 * 180.02562 * 19 18 17 21 21 C 1.50697 * 109.46890 * 180.02562 * 20 19 18 22 22 C 1.34511 * 125.79278 * 90.00235 * 21 20 19 23 23 C 1.41386 * 106.84141 * 180.02562 * 22 21 20 24 24 C 1.34507 * 106.84010 * 0.02562 * 23 22 21 25 25 O 1.34304 * 108.42311 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47112 * 300.00160 * 1 2 3 27 27 H 1.09001 * 109.46938 * 59.99762 * 1 2 3 28 28 H 1.09002 * 109.47060 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47205 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46895 * 300.00101 * 3 2 1 31 31 H 1.09000 * 109.47246 * 59.99921 * 3 2 1 32 32 H 1.08996 * 109.47112 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.47095 * 300.00164 * 4 2 1 34 34 H 0.97003 * 119.99741 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.46736 * 179.97438 * 13 2 1 36 36 H 1.08994 * 109.47644 * 59.99859 * 13 2 1 37 37 H 0.97007 * 120.00274 * 0.02562 * 14 13 2 38 38 H 1.07995 * 120.00467 * 0.02562 * 17 15 14 39 39 H 1.07992 * 120.00572 * 0.02562 * 18 17 15 40 40 H 1.08994 * 109.46907 * 60.00162 * 20 19 18 41 41 H 1.09003 * 109.47081 * 299.99866 * 20 19 18 42 42 H 1.08000 * 126.57995 * 0.05173 * 22 21 20 43 43 H 1.08004 * 126.57483 * 179.97438 * 23 22 21 44 44 H 1.08004 * 125.79019 * 180.26381 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 2.6264 -1.5515 -3.8527 9 14 1.2483 0.3989 -5.2572 10 1 2.2271 1.4398 -5.6615 11 1 1.0825 -0.5803 -6.3613 12 1 -0.0594 1.0373 -4.9613 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5786 -1.4807 3.7812 17 6 1.4072 0.1754 4.8230 18 6 1.7335 -0.2863 6.0501 19 16 1.1462 0.5443 7.4888 20 6 1.8823 -0.4955 8.7746 21 6 1.5032 0.0397 10.1314 22 6 0.4149 -0.3115 10.8396 23 6 0.4530 0.4291 12.0433 24 6 1.5619 1.1890 11.9984 25 8 2.1943 0.9488 10.8382 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 -0.7209 -1.2495 33 1 1.6767 -1.7490 -1.2493 34 1 2.8608 -1.8829 -4.7337 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -1.7489 1.2493 37 1 0.9937 0.7578 2.3564 38 1 0.7860 1.0532 4.7239 39 1 2.3543 -1.1644 6.1492 40 1 2.9673 -0.4881 8.6708 41 1 1.5143 -1.5163 8.6712 42 1 -0.3424 -1.0230 10.5454 43 1 -0.2702 0.3924 12.8447 44 1 1.8908 1.8725 12.7672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492800276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:01 Heat of formation + Delta-G solvation = -18.742081 kcal Electronic energy + Delta-G solvation = -23186.222153 eV Core-core repulsion = 19617.641961 eV Total energy + Delta-G solvation = -3568.580191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.05813 -39.75772 -37.17760 -33.72801 -33.58654 -33.07008 -32.52484 -32.02109 -27.47436 -27.15402 -26.51466 -26.49894 -23.95906 -22.36448 -22.26281 -21.09587 -19.91459 -18.35787 -17.89169 -17.51629 -16.96670 -16.40925 -16.10403 -15.52739 -15.21806 -15.05221 -14.60846 -14.48158 -14.26083 -13.60297 -13.53086 -13.32220 -13.18049 -13.12808 -12.75027 -12.68850 -12.61007 -12.17245 -12.05257 -11.17627 -11.01376 -10.88077 -10.85091 -10.84317 -10.62673 -10.40581 -10.39532 -10.24613 -9.89924 -9.86687 -9.17319 -8.96712 -8.91608 -8.73514 -8.35266 -7.94948 -5.99362 -4.00611 0.57647 0.89777 1.53267 1.80403 2.22706 2.43321 3.31476 3.38463 3.40208 3.44325 3.68565 3.97113 4.32539 4.45927 4.51731 4.66828 4.75001 4.78929 5.21891 5.29407 5.36170 5.40566 5.50743 5.54219 5.64048 5.66748 5.75322 5.83359 5.96405 6.18704 6.24366 6.31829 6.40824 6.58161 6.59371 6.64172 6.78389 7.07357 7.08604 7.13844 7.64727 7.76829 7.77272 7.99413 8.40164 8.44457 9.04180 9.62470 11.12061 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.050097 B = 0.001625 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.786806 B =17229.851604 C =17414.142678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.128 3.872 14 N -0.714 5.714 15 C 0.547 3.453 16 O -0.556 6.556 17 C -0.187 4.187 18 C -0.088 4.088 19 S -0.082 6.082 20 C -0.037 4.037 21 C -0.011 4.011 22 C -0.180 4.180 23 C -0.216 4.216 24 C -0.028 4.028 25 O -0.170 6.170 26 H 0.029 0.971 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.399 0.601 38 H 0.130 0.870 39 H 0.149 0.851 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 5.411 30.815 31.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.005 3.995 14 N -0.365 5.365 15 C 0.334 3.666 16 O -0.437 6.437 17 C -0.220 4.220 18 C -0.223 4.223 19 S 0.163 5.837 20 C -0.184 4.184 21 C -0.062 4.062 22 C -0.202 4.202 23 C -0.235 4.235 24 C -0.097 4.097 25 O -0.066 6.066 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.235 0.765 38 H 0.147 0.853 39 H 0.166 0.834 40 H 0.129 0.871 41 H 0.140 0.860 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.252 5.682 30.831 31.637 hybrid contribution 0.029 -0.342 -1.029 1.085 sum -4.222 5.340 29.802 30.569 Atomic orbital electron populations 1.21765 0.95255 1.01178 1.00256 1.20917 0.95500 0.95879 0.95090 1.21764 1.00557 0.95885 1.00254 1.19092 0.96357 0.95228 0.89474 1.21192 1.31206 1.12031 0.90534 0.92251 1.25018 0.95340 0.95070 0.99089 1.69970 1.36983 1.23010 1.23418 0.86641 0.79169 0.79400 0.83048 1.20789 1.21352 1.19957 1.21630 0.98955 0.96040 0.82892 1.46135 1.52671 1.31733 1.05932 1.16820 0.81195 0.84658 0.83897 1.90828 1.38824 1.26751 1.87343 1.21535 1.05310 1.02980 0.92218 1.25742 0.99458 1.01302 0.95771 1.86219 1.63762 1.37962 0.95729 1.21984 1.05592 1.01436 0.89433 1.21263 0.94562 0.95891 0.94466 1.21684 0.99162 1.04071 0.95324 1.21888 1.00529 1.00892 1.00188 1.24159 0.94420 1.02920 0.88162 1.84034 1.46614 1.48827 1.27168 0.95205 0.91428 0.93355 0.93354 0.91435 0.95199 0.96339 0.96324 0.93057 0.91739 0.91740 0.76513 0.85262 0.83373 0.87122 0.86018 0.82920 0.83034 0.77703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 2 C -0.07 -1.40 0.54 -154.50 -0.08 -1.48 16 3 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.59 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 14 N -0.71 -10.50 4.95 -63.33 -0.31 -10.81 16 15 C 0.55 8.28 7.55 -15.10 -0.11 8.16 16 16 O -0.56 -10.46 16.10 5.10 0.08 -10.38 16 17 C -0.19 -2.16 9.50 -39.54 -0.38 -2.53 16 18 C -0.09 -0.91 9.52 29.62 0.28 -0.63 16 19 S -0.08 -0.71 22.02 -107.50 -2.37 -3.08 16 20 C -0.04 -0.25 6.20 36.00 0.22 -0.03 16 21 C -0.01 -0.08 6.58 -35.63 -0.23 -0.32 16 22 C -0.18 -1.28 10.81 -39.70 -0.43 -1.71 16 23 C -0.22 -1.33 10.91 -39.70 -0.43 -1.76 16 24 C -0.03 -0.16 12.09 29.41 0.36 0.19 16 25 O -0.17 -1.44 10.65 5.70 0.06 -1.38 16 26 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 27 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 31 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.40 4.94 6.12 -40.82 -0.25 4.69 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.15 1.55 7.41 -52.49 -0.39 1.17 16 40 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.12 0.61 8.14 -51.91 -0.42 0.19 16 42 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.15 0.61 8.06 -52.48 -0.42 0.18 16 44 H 0.21 0.44 8.06 -52.48 -0.42 0.02 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -32.64 381.21 -8.33 -40.96 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.55 Total: 1.78 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -0.70 Total: -13.33 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.42 Total: -36.51 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.14 Total: -11.76 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -2.37 Total: -3.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.64 -8.33 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492800276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.222 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds