Wall clock time and date at job start Tue Mar 31 2020 14:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47145 * 2 1 4 4 C 1.53005 * 109.47009 * 239.99951 * 2 1 3 5 5 C 1.50703 * 109.46794 * 60.00134 * 4 2 1 6 6 H 1.08002 * 120.00242 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99654 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99845 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99737 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47488 * 89.99821 * 9 7 5 11 11 H 1.48502 * 109.46660 * 209.99707 * 9 7 5 12 12 H 1.48499 * 109.47222 * 329.99226 * 9 7 5 13 13 C 1.53001 * 109.46898 * 120.00305 * 2 1 3 14 14 N 1.46496 * 109.46996 * 299.99786 * 13 2 1 15 15 C 1.34779 * 120.00057 * 180.02562 * 14 13 2 16 16 O 1.21795 * 119.99817 * 0.02562 * 15 14 13 17 17 C 1.41276 * 119.99718 * 179.97438 * 15 14 13 18 18 C 1.35113 * 119.99436 * 179.97438 * 17 15 14 19 19 S 1.76202 * 119.99843 * 180.02562 * 18 17 15 20 20 C 1.81003 * 100.00119 * 180.02562 * 19 18 17 21 21 C 1.50697 * 109.46890 * 180.02562 * 20 19 18 22 22 C 1.34511 * 125.79278 * 90.00235 * 21 20 19 23 23 C 1.41386 * 106.84141 * 180.02562 * 22 21 20 24 24 C 1.34507 * 106.84010 * 0.02562 * 23 22 21 25 25 O 1.34304 * 108.42311 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47112 * 300.00160 * 1 2 3 27 27 H 1.09001 * 109.46938 * 59.99762 * 1 2 3 28 28 H 1.09002 * 109.47060 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47205 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46895 * 300.00101 * 3 2 1 31 31 H 1.09000 * 109.47246 * 59.99921 * 3 2 1 32 32 H 1.08996 * 109.47112 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.47095 * 300.00164 * 4 2 1 34 34 H 0.97003 * 119.99741 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.46736 * 179.97438 * 13 2 1 36 36 H 1.08994 * 109.47644 * 59.99859 * 13 2 1 37 37 H 0.97007 * 120.00274 * 0.02562 * 14 13 2 38 38 H 1.07995 * 120.00467 * 0.02562 * 17 15 14 39 39 H 1.07992 * 120.00572 * 0.02562 * 18 17 15 40 40 H 1.08994 * 109.46907 * 60.00162 * 20 19 18 41 41 H 1.09003 * 109.47081 * 299.99866 * 20 19 18 42 42 H 1.08000 * 126.57995 * 0.05173 * 22 21 20 43 43 H 1.08004 * 126.57483 * 179.97438 * 23 22 21 44 44 H 1.08004 * 125.79019 * 180.26381 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 2.6264 -1.5515 -3.8527 9 14 1.2483 0.3989 -5.2572 10 1 2.2271 1.4398 -5.6615 11 1 1.0825 -0.5803 -6.3613 12 1 -0.0594 1.0373 -4.9613 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5786 -1.4807 3.7812 17 6 1.4072 0.1754 4.8230 18 6 1.7335 -0.2863 6.0501 19 16 1.1462 0.5443 7.4888 20 6 1.8823 -0.4955 8.7746 21 6 1.5032 0.0397 10.1314 22 6 0.4149 -0.3115 10.8396 23 6 0.4530 0.4291 12.0433 24 6 1.5619 1.1890 11.9984 25 8 2.1943 0.9488 10.8382 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 -0.7209 -1.2495 33 1 1.6767 -1.7490 -1.2493 34 1 2.8608 -1.8829 -4.7337 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -1.7489 1.2493 37 1 0.9937 0.7578 2.3564 38 1 0.7860 1.0532 4.7239 39 1 2.3543 -1.1644 6.1492 40 1 2.9673 -0.4881 8.6708 41 1 1.5143 -1.5163 8.6712 42 1 -0.3424 -1.0230 10.5454 43 1 -0.2702 0.3924 12.8447 44 1 1.8908 1.8725 12.7672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492800276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:01 Heat of formation + Delta-G solvation = -37.906263 kcal Electronic energy + Delta-G solvation = -23187.053174 eV Core-core repulsion = 19617.641961 eV Total energy + Delta-G solvation = -3569.411213 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.54852 -41.01554 -38.71621 -35.23156 -34.23514 -34.16267 -33.71890 -33.00004 -29.16950 -28.12019 -27.94645 -27.67662 -25.48231 -23.88969 -22.74759 -21.69123 -21.01905 -19.75388 -18.64277 -18.45786 -18.33935 -17.57733 -17.00195 -16.74765 -16.38773 -16.37755 -15.70798 -15.47260 -15.15455 -15.02879 -14.75334 -14.47894 -14.18466 -13.92717 -13.79078 -13.78464 -13.61402 -13.58482 -13.12814 -12.86615 -12.71279 -12.58335 -12.32326 -12.21554 -11.96722 -11.71910 -11.58638 -11.52105 -11.23482 -10.91332 -10.89059 -10.80785 -10.50402 -10.06587 -9.45566 -8.68673 -8.13112 -6.20934 -0.04039 -0.02546 0.89793 1.20737 1.43454 1.43845 1.54275 1.74462 1.98732 2.32406 2.41047 2.50758 3.21334 3.50910 3.88840 3.93203 3.99171 4.08285 4.10051 4.22946 4.26193 4.27140 4.33413 4.70125 4.74095 4.77653 4.82716 4.86563 4.97077 4.98215 5.01605 5.11998 5.12352 5.13932 5.41514 5.48772 5.51530 5.53853 5.54962 5.59145 5.81613 5.90909 6.11474 6.31460 6.62221 6.94266 7.27662 7.46794 8.99365 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.050097 B = 0.001625 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.786806 B =17229.851604 C =17414.142678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.066 4.066 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.259 1.259 13 C 0.142 3.858 14 N -0.704 5.704 15 C 0.548 3.452 16 O -0.602 6.602 17 C -0.205 4.205 18 C -0.071 4.071 19 S -0.073 6.073 20 C -0.036 4.036 21 C -0.034 4.034 22 C -0.186 4.186 23 C -0.229 4.229 24 C -0.028 4.028 25 O -0.191 6.191 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.070 0.930 32 H -0.014 1.014 33 H -0.014 1.014 34 H 0.259 0.741 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.414 0.586 38 H 0.156 0.844 39 H 0.143 0.857 40 H 0.116 0.884 41 H 0.139 0.861 42 H 0.164 0.836 43 H 0.171 0.829 44 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.159 7.646 32.914 34.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.066 4.066 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.183 1.183 13 C 0.017 3.983 14 N -0.355 5.355 15 C 0.338 3.662 16 O -0.486 6.486 17 C -0.239 4.239 18 C -0.206 4.206 19 S 0.174 5.826 20 C -0.183 4.183 21 C -0.084 4.084 22 C -0.208 4.208 23 C -0.248 4.248 24 C -0.096 4.096 25 O -0.088 6.088 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.253 0.747 38 H 0.174 0.826 39 H 0.161 0.839 40 H 0.135 0.865 41 H 0.157 0.843 42 H 0.182 0.818 43 H 0.189 0.811 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -6.017 7.963 32.953 34.431 hybrid contribution 0.586 -1.069 -1.452 1.896 sum -5.431 6.893 31.501 32.700 Atomic orbital electron populations 1.21699 0.93529 1.00989 1.01684 1.20724 0.96767 0.96330 0.92805 1.21700 0.99903 0.94627 1.01703 1.18974 0.94261 0.94212 0.92345 1.21607 1.30462 1.12056 0.91088 0.90898 1.25959 0.95692 0.95857 1.02742 1.70129 1.38816 1.24970 1.24055 0.85523 0.79165 0.78082 0.78734 1.20190 1.21591 1.18337 1.21200 0.97765 0.95388 0.83917 1.45890 1.52813 1.31975 1.04862 1.17329 0.80210 0.84022 0.84652 1.90809 1.41027 1.28922 1.87881 1.21401 1.07297 1.04338 0.90875 1.25871 0.97743 1.00524 0.96479 1.86228 1.63142 1.37949 0.95237 1.22100 1.05946 1.01793 0.88428 1.21440 0.95226 0.96747 0.95034 1.22007 0.99065 1.04062 0.95646 1.22234 1.01214 1.00852 1.00510 1.24906 0.94056 1.02819 0.87840 1.84024 1.47415 1.49243 1.28130 0.91093 0.92563 0.94426 0.94469 0.92516 0.91103 0.99609 0.99561 0.93209 0.93613 0.93559 0.74733 0.82642 0.83946 0.86522 0.84305 0.81791 0.81125 0.74529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 2 C -0.07 -2.51 0.54 -52.18 -0.03 -2.53 16 3 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 4 C 0.04 2.03 4.04 29.85 0.12 2.16 16 5 C -0.51 -27.68 7.65 25.60 0.20 -27.48 16 6 H 0.07 3.66 5.68 -2.91 -0.02 3.65 16 7 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 8 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 9 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 13 C 0.14 5.15 4.56 86.38 0.39 5.54 16 14 N -0.70 -19.81 4.95 -472.44 -2.34 -22.15 16 15 C 0.55 16.19 7.55 84.99 0.64 16.83 16 16 O -0.60 -23.00 16.10 -4.65 -0.07 -23.08 16 17 C -0.21 -4.36 9.50 22.30 0.21 -4.15 16 18 C -0.07 -1.36 9.52 67.10 0.64 -0.72 16 19 S -0.07 -1.11 22.02 -56.49 -1.24 -2.36 16 20 C -0.04 -0.42 6.20 71.23 0.44 0.02 16 21 C -0.03 -0.48 6.58 24.83 0.16 -0.32 16 22 C -0.19 -2.31 10.81 22.19 0.24 -2.07 16 23 C -0.23 -2.35 10.91 22.19 0.24 -2.11 16 24 C -0.03 -0.27 12.09 66.97 0.81 0.53 16 25 O -0.19 -2.96 10.65 -2.51 -0.03 -2.98 16 26 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 27 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16 31 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 32 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.41 8.99 6.12 -92.70 -0.57 8.42 16 38 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.14 2.88 7.41 -2.91 -0.02 2.86 16 40 H 0.12 1.24 8.14 -2.40 -0.02 1.22 16 41 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 44 H 0.24 0.37 8.06 -2.91 -0.02 0.34 16 Total: -1.00 -73.46 381.21 4.75 -68.71 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.43 Total: 14.40 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 5.69 Total: -21.22 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -2.05 Total: -79.22 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.10 Total: -26.06 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -1.24 Total: -2.36 kcal Total: -73.46 4.75 -68.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492800276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.801 kcal (2) G-P(sol) polarization free energy of solvation -73.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds