Wall clock time and date at job start Tue Mar 31 2020 13:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32570 * 119.99934 * 2 1 4 4 C 1.47812 * 120.00009 * 171.76029 * 3 2 1 5 5 C 1.39538 * 120.13865 * 322.40862 * 4 3 2 6 6 C 1.37981 * 119.85395 * 179.74253 * 5 4 3 7 7 C 1.38347 * 120.13970 * 0.51341 * 6 5 4 8 8 C 1.38341 * 120.28355 * 359.76017 * 7 6 5 9 9 C 1.37976 * 120.14914 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00026 * 180.02562 * 2 1 3 11 11 N 1.46494 * 109.47028 * 56.36966 * 10 2 1 12 12 C 1.46507 * 120.00016 * 280.19787 * 11 10 2 13 13 S 1.65600 * 120.00191 * 100.20220 * 11 10 2 14 14 O 1.42103 * 104.27877 * 206.06569 * 13 11 10 15 15 O 1.42098 * 104.27733 * 333.92671 * 13 11 10 16 16 C 1.81404 * 104.45008 * 89.99733 * 13 11 10 17 17 C 1.53009 * 109.47150 * 179.97438 * 16 13 11 18 18 C 1.50699 * 109.46957 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00235 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99707 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99887 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99964 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47027 * 59.99739 * 22 20 18 24 24 H 1.48505 * 109.47224 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46688 * 299.99555 * 22 20 18 26 26 H 1.08998 * 109.46924 * 89.99933 * 1 2 3 27 27 H 1.08997 * 109.46839 * 209.99443 * 1 2 3 28 28 H 1.08999 * 109.47188 * 329.99776 * 1 2 3 29 29 H 1.07999 * 119.99728 * 351.49233 * 3 2 1 30 30 H 1.08001 * 120.07043 * 359.97438 * 5 4 3 31 31 H 1.07995 * 119.92847 * 180.25260 * 6 5 4 32 32 H 1.07991 * 119.85511 * 179.74033 * 7 6 5 33 33 H 1.08008 * 119.92695 * 179.97438 * 8 7 6 34 34 H 1.07999 * 120.07337 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.47224 * 176.36667 * 10 2 1 36 36 H 1.08995 * 109.46980 * 296.36608 * 10 2 1 37 37 H 1.08997 * 109.47210 * 95.09874 * 12 11 10 38 38 H 1.08998 * 109.46861 * 215.10227 * 12 11 10 39 39 H 1.09000 * 109.46944 * 335.10126 * 12 11 10 40 40 H 1.09001 * 109.47148 * 299.99745 * 16 13 11 41 41 H 1.08999 * 109.47310 * 60.00193 * 16 13 11 42 42 H 1.08992 * 109.47016 * 300.00225 * 17 16 13 43 43 H 1.08999 * 109.46728 * 59.99993 * 17 16 13 44 44 H 0.97009 * 120.00069 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1481 0.0000 4 6 3.6366 1.1547 0.1835 5 6 4.2361 0.2569 1.0675 6 6 5.6063 0.2646 1.2302 7 6 6.3842 1.1671 0.5271 8 6 5.7953 2.0636 -0.3465 9 6 4.4268 2.0625 -0.5224 10 6 2.2605 -1.3051 -0.0006 11 7 1.8422 -2.1099 -1.1509 12 6 0.5908 -2.8698 -1.0971 13 16 2.7839 -2.1609 -2.5122 14 8 1.8705 -2.4584 -3.5593 15 8 3.4984 -0.9328 -2.4902 16 6 3.9084 -3.5566 -2.2327 17 6 4.8408 -3.7093 -3.4363 18 6 5.7745 -4.8692 -3.2043 19 1 5.7098 -5.4401 -2.2899 20 6 6.7122 -5.2008 -4.1592 21 7 6.7914 -4.5053 -5.2725 22 14 7.8692 -6.6390 -3.8721 23 1 7.0781 -7.8837 -3.6985 24 1 8.7742 -6.7871 -5.0401 25 1 8.6747 -6.3898 -2.6496 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 1.6387 2.0782 -0.1384 30 1 3.6294 -0.4450 1.6203 31 1 6.0719 -0.4325 1.9110 32 1 7.4558 1.1719 0.6612 33 1 6.4082 2.7659 -0.8922 34 1 3.9684 2.7627 -1.2051 35 1 3.3304 -1.1069 -0.0656 36 1 2.0470 -1.8483 0.9199 37 1 -0.2099 -2.2837 -1.5481 38 1 0.7097 -3.8047 -1.6448 39 1 0.3417 -3.0864 -0.0583 40 1 4.4997 -3.3729 -1.3356 41 1 3.3284 -4.4706 -2.1048 42 1 4.2493 -3.8931 -4.3331 43 1 5.4209 -2.7954 -3.5646 44 1 7.4509 -4.7388 -5.9445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494434359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:49 Heat of formation + Delta-G solvation = -32.866512 kcal Electronic energy + Delta-G solvation = -25763.576676 eV Core-core repulsion = 22194.384003 eV Total energy + Delta-G solvation = -3569.192673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.44068 -37.21240 -36.54269 -35.33069 -34.23269 -33.86619 -31.13853 -30.94177 -30.86228 -28.06454 -26.46466 -25.61498 -24.68432 -22.33857 -21.83404 -21.47962 -18.85861 -18.28966 -17.47839 -16.60889 -16.48819 -15.97393 -15.57122 -15.27065 -14.93417 -14.57841 -14.53347 -14.21745 -13.95496 -13.46358 -13.32977 -13.19302 -12.97090 -12.74578 -12.51684 -12.46237 -12.18257 -11.85942 -11.80595 -11.72931 -11.48970 -11.28570 -11.16192 -11.05794 -10.94948 -10.94156 -10.76172 -10.40694 -10.35729 -9.75007 -9.55446 -9.32964 -8.79747 -8.71331 -8.48810 -8.04209 -6.10915 -4.16548 0.78064 1.13361 1.53763 2.34593 3.15544 3.27632 3.32328 3.34222 3.97245 4.33373 4.42664 4.62809 4.70623 4.82588 4.84628 4.99992 5.04972 5.13810 5.24008 5.25520 5.38007 5.43656 5.52298 5.57679 5.58406 5.65565 5.66249 5.70939 5.71790 5.78108 5.90169 6.01498 6.07592 6.15889 6.37943 6.51227 6.52529 6.62514 6.66389 6.69258 6.88495 7.12337 7.31715 7.38251 7.81678 8.19283 8.86460 9.47957 11.00114 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011819 B = 0.004404 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.495134 B = 6356.123423 C = 7849.691750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.133 4.133 3 C -0.108 4.108 4 C -0.044 4.044 5 C -0.122 4.122 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.116 4.116 9 C -0.098 4.098 10 C 0.145 3.855 11 N -1.005 6.005 12 C 0.095 3.905 13 S 2.586 3.414 14 O -0.966 6.966 15 O -0.951 6.951 16 C -0.591 4.591 17 C 0.030 3.970 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 10.123 15.211 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.135 4.135 3 C -0.128 4.128 4 C -0.044 4.044 5 C -0.140 4.140 6 C -0.138 4.138 7 C -0.138 4.138 8 C -0.135 4.135 9 C -0.116 4.116 10 C 0.020 3.980 11 N -0.841 5.841 12 C -0.050 4.050 13 S 2.684 3.316 14 O -0.956 6.956 15 O -0.941 6.941 16 C -0.724 4.724 17 C -0.009 4.009 18 C -0.560 4.560 19 H 0.079 0.921 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.201 1.201 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.871 10.727 14.321 20.435 hybrid contribution 0.835 -1.339 0.359 1.618 sum -9.036 9.388 14.680 19.629 Atomic orbital electron populations 1.20773 0.91699 1.02128 1.02209 1.22369 0.96074 0.94997 1.00031 1.21473 0.91978 0.97659 1.01652 1.18938 0.93034 0.95896 0.96561 1.21344 0.95062 0.98478 0.99121 1.21052 0.93740 0.98977 1.00081 1.21170 0.99747 0.95904 0.96998 1.21068 0.94839 0.99208 0.98335 1.21174 0.93701 0.98485 0.98207 1.20849 0.99611 0.88626 0.88902 1.57804 1.34105 1.59184 1.32981 1.21452 0.85894 0.95405 1.02297 1.05908 0.75218 0.77462 0.72998 1.93531 1.62086 1.86553 1.53441 1.93572 1.74191 1.41072 1.85306 1.30505 1.14176 1.17005 1.10757 1.18937 0.93371 0.99444 0.89156 1.20962 1.16906 1.14055 1.04032 0.92143 1.25060 0.97417 0.96916 0.95019 1.69951 1.35390 1.39745 1.07782 0.86540 0.80562 0.82456 0.77777 1.20078 1.21044 1.20068 0.91405 0.91613 0.91920 0.86191 0.85865 0.86042 0.86250 0.86170 0.86172 0.87649 0.90271 0.92696 0.91370 0.91276 0.86407 0.86470 0.95001 0.94878 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 8.77 36.01 0.32 -0.73 16 2 C -0.13 -1.57 5.62 -101.25 -0.57 -2.14 16 3 C -0.11 -1.33 9.39 -37.57 -0.35 -1.68 16 4 C -0.04 -0.60 5.19 -105.01 -0.55 -1.15 16 5 C -0.12 -1.53 7.27 -39.19 -0.29 -1.82 16 6 C -0.12 -1.48 10.03 -39.64 -0.40 -1.88 16 7 C -0.12 -1.51 10.04 -39.50 -0.40 -1.91 16 8 C -0.12 -1.51 10.03 -39.64 -0.40 -1.91 16 9 C -0.10 -1.34 9.79 -39.20 -0.38 -1.72 16 10 C 0.14 1.79 4.02 -5.20 -0.02 1.77 16 11 N -1.01 -14.10 3.09 -123.06 -0.38 -14.48 16 12 C 0.10 1.07 8.78 59.85 0.53 1.59 16 13 S 2.59 48.82 5.34 -107.50 -0.57 48.25 16 14 O -0.97 -20.86 17.19 -57.54 -0.99 -21.85 16 15 O -0.95 -20.14 16.88 -57.54 -0.97 -21.12 16 16 C -0.59 -11.78 6.12 37.16 0.23 -11.55 16 17 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 18 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 22 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H 0.07 0.69 7.99 -51.93 -0.41 0.28 16 27 H 0.06 0.52 7.58 -51.93 -0.39 0.13 16 28 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.27 6.35 -52.49 -0.33 0.94 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.11 1.46 3.85 -51.93 -0.20 1.26 16 36 H 0.08 0.74 7.99 -51.93 -0.41 0.33 16 37 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 38 H 0.07 0.76 7.97 -51.93 -0.41 0.35 16 39 H 0.07 0.56 7.90 -51.93 -0.41 0.15 16 40 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 41 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -35.41 375.52 -11.12 -46.52 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.74 Total: 2.52 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: -2.83 Total: -35.80 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.36 Total: -40.50 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.96 Total: -42.96 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 48.82 SS G_CDS: -0.57 Total: 48.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.41 -11.12 -46.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494434359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.654 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds