Wall clock time and date at job start Tue Mar 31 2020 13:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32570 * 119.99934 * 2 1 4 4 C 1.47812 * 120.00009 * 171.76029 * 3 2 1 5 5 C 1.39538 * 120.13865 * 322.40862 * 4 3 2 6 6 C 1.37981 * 119.85395 * 179.74253 * 5 4 3 7 7 C 1.38347 * 120.13970 * 0.51341 * 6 5 4 8 8 C 1.38341 * 120.28355 * 359.76017 * 7 6 5 9 9 C 1.37976 * 120.14914 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00026 * 180.02562 * 2 1 3 11 11 N 1.46494 * 109.47028 * 56.36966 * 10 2 1 12 12 C 1.46507 * 120.00016 * 280.19787 * 11 10 2 13 13 S 1.65600 * 120.00191 * 100.20220 * 11 10 2 14 14 O 1.42103 * 104.27877 * 206.06569 * 13 11 10 15 15 O 1.42098 * 104.27733 * 333.92671 * 13 11 10 16 16 C 1.81404 * 104.45008 * 89.99733 * 13 11 10 17 17 C 1.53009 * 109.47150 * 179.97438 * 16 13 11 18 18 C 1.50699 * 109.46957 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00235 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99707 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99887 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99964 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47027 * 59.99739 * 22 20 18 24 24 H 1.48505 * 109.47224 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46688 * 299.99555 * 22 20 18 26 26 H 1.08998 * 109.46924 * 89.99933 * 1 2 3 27 27 H 1.08997 * 109.46839 * 209.99443 * 1 2 3 28 28 H 1.08999 * 109.47188 * 329.99776 * 1 2 3 29 29 H 1.07999 * 119.99728 * 351.49233 * 3 2 1 30 30 H 1.08001 * 120.07043 * 359.97438 * 5 4 3 31 31 H 1.07995 * 119.92847 * 180.25260 * 6 5 4 32 32 H 1.07991 * 119.85511 * 179.74033 * 7 6 5 33 33 H 1.08008 * 119.92695 * 179.97438 * 8 7 6 34 34 H 1.07999 * 120.07337 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.47224 * 176.36667 * 10 2 1 36 36 H 1.08995 * 109.46980 * 296.36608 * 10 2 1 37 37 H 1.08997 * 109.47210 * 95.09874 * 12 11 10 38 38 H 1.08998 * 109.46861 * 215.10227 * 12 11 10 39 39 H 1.09000 * 109.46944 * 335.10126 * 12 11 10 40 40 H 1.09001 * 109.47148 * 299.99745 * 16 13 11 41 41 H 1.08999 * 109.47310 * 60.00193 * 16 13 11 42 42 H 1.08992 * 109.47016 * 300.00225 * 17 16 13 43 43 H 1.08999 * 109.46728 * 59.99993 * 17 16 13 44 44 H 0.97009 * 120.00069 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1481 0.0000 4 6 3.6366 1.1547 0.1835 5 6 4.2361 0.2569 1.0675 6 6 5.6063 0.2646 1.2302 7 6 6.3842 1.1671 0.5271 8 6 5.7953 2.0636 -0.3465 9 6 4.4268 2.0625 -0.5224 10 6 2.2605 -1.3051 -0.0006 11 7 1.8422 -2.1099 -1.1509 12 6 0.5908 -2.8698 -1.0971 13 16 2.7839 -2.1609 -2.5122 14 8 1.8705 -2.4584 -3.5593 15 8 3.4984 -0.9328 -2.4902 16 6 3.9084 -3.5566 -2.2327 17 6 4.8408 -3.7093 -3.4363 18 6 5.7745 -4.8692 -3.2043 19 1 5.7098 -5.4401 -2.2899 20 6 6.7122 -5.2008 -4.1592 21 7 6.7914 -4.5053 -5.2725 22 14 7.8692 -6.6390 -3.8721 23 1 7.0781 -7.8837 -3.6985 24 1 8.7742 -6.7871 -5.0401 25 1 8.6747 -6.3898 -2.6496 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 1.6387 2.0782 -0.1384 30 1 3.6294 -0.4450 1.6203 31 1 6.0719 -0.4325 1.9110 32 1 7.4558 1.1719 0.6612 33 1 6.4082 2.7659 -0.8922 34 1 3.9684 2.7627 -1.2051 35 1 3.3304 -1.1069 -0.0656 36 1 2.0470 -1.8483 0.9199 37 1 -0.2099 -2.2837 -1.5481 38 1 0.7097 -3.8047 -1.6448 39 1 0.3417 -3.0864 -0.0583 40 1 4.4997 -3.3729 -1.3356 41 1 3.3284 -4.4706 -2.1048 42 1 4.2493 -3.8931 -4.3331 43 1 5.4209 -2.7954 -3.5646 44 1 7.4509 -4.7388 -5.9445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494434359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:49 Heat of formation + Delta-G solvation = -55.186736 kcal Electronic energy + Delta-G solvation = -25764.544553 eV Core-core repulsion = 22194.384003 eV Total energy + Delta-G solvation = -3570.160550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.37089 -38.25968 -38.07925 -36.94017 -35.90718 -35.21703 -33.13779 -31.87864 -31.75045 -28.95394 -27.61891 -27.31934 -25.75197 -23.57621 -23.18335 -22.74651 -20.05732 -19.44899 -19.02541 -18.29118 -17.65472 -17.29800 -16.87218 -16.55660 -16.39805 -15.97493 -15.78790 -15.25150 -15.02541 -14.92259 -14.48059 -14.28183 -14.11873 -13.81106 -13.75160 -13.71517 -13.41671 -13.18513 -13.13093 -13.00023 -12.91498 -12.83194 -12.78423 -12.47288 -12.25579 -12.22480 -12.14665 -11.86819 -11.76026 -11.66654 -11.16850 -10.65148 -10.47728 -9.95456 -9.70823 -8.97225 -8.26712 -6.41535 -0.71210 0.17503 0.57047 1.38232 1.39906 1.43791 1.52003 1.88571 2.37539 2.87629 3.00341 3.06364 3.21044 3.76034 3.85314 3.96787 4.05059 4.07617 4.10621 4.16068 4.24429 4.36013 4.56155 4.63397 4.65710 4.71396 4.72878 4.76184 4.85296 4.90037 4.97673 5.02190 5.12136 5.20331 5.23260 5.23939 5.24683 5.49544 5.59604 5.65287 5.66489 5.68859 5.73269 5.97780 6.04573 6.19310 6.71618 7.28849 8.85492 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011819 B = 0.004404 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.495134 B = 6356.123423 C = 7849.691750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.060 4.060 5 C -0.129 4.129 6 C -0.130 4.130 7 C -0.136 4.136 8 C -0.133 4.133 9 C -0.125 4.125 10 C 0.134 3.866 11 N -0.992 5.992 12 C 0.082 3.918 13 S 2.606 3.394 14 O -0.998 6.998 15 O -0.980 6.980 16 C -0.590 4.590 17 C 0.024 3.976 18 C -0.540 4.540 19 H 0.076 0.924 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.284 1.284 25 H -0.262 1.262 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.003 0.997 43 H 0.003 0.997 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.672 8.573 17.923 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.136 4.136 3 C -0.143 4.143 4 C -0.060 4.060 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.151 4.151 9 C -0.143 4.143 10 C 0.011 3.989 11 N -0.830 5.830 12 C -0.062 4.062 13 S 2.703 3.297 14 O -0.988 6.988 15 O -0.970 6.970 16 C -0.722 4.722 17 C -0.015 4.015 18 C -0.579 4.579 19 H 0.094 0.906 20 C -0.201 4.201 21 N -0.575 5.575 22 Si 0.797 3.203 23 H -0.186 1.186 24 H -0.209 1.209 25 H -0.187 1.187 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.149 0.851 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.108 0.892 36 H 0.139 0.861 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.713 9.170 17.039 22.118 hybrid contribution 1.026 -0.801 -0.445 1.376 sum -9.687 8.369 16.594 20.958 Atomic orbital electron populations 1.20832 0.89812 1.04010 1.02077 1.22583 0.97400 0.94386 0.99206 1.21660 0.91542 0.98676 1.02375 1.19239 0.93913 0.96088 0.96785 1.21653 0.95503 0.98547 0.98976 1.21430 0.93985 0.99164 1.00227 1.21501 1.00890 0.95986 0.97028 1.21348 0.94989 0.99881 0.98835 1.21428 0.94384 0.99395 0.99075 1.21141 0.98970 0.89335 0.89501 1.57354 1.34103 1.59638 1.31953 1.21813 0.84281 0.94990 1.05160 1.04996 0.74791 0.76347 0.73565 1.93482 1.62756 1.86750 1.55832 1.93533 1.75197 1.42126 1.86129 1.30405 1.14021 1.19211 1.08547 1.18771 0.93914 0.97845 0.90933 1.21473 1.17226 1.14572 1.04623 0.90603 1.26133 0.99392 1.00034 0.94578 1.70108 1.36476 1.41876 1.08990 0.85363 0.78161 0.78724 0.78017 1.18646 1.20896 1.18651 0.92379 0.89511 0.90421 0.85064 0.83645 0.83793 0.84572 0.84932 0.85936 0.89210 0.86093 0.92341 0.91490 0.87047 0.84402 0.84256 0.97918 0.97877 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 8.77 71.24 0.62 -1.11 16 2 C -0.13 -2.85 5.62 -17.60 -0.10 -2.95 16 3 C -0.12 -2.90 9.39 23.65 0.22 -2.68 16 4 C -0.06 -1.61 5.19 -20.12 -0.10 -1.72 16 5 C -0.13 -3.07 7.27 22.52 0.16 -2.91 16 6 C -0.13 -3.07 10.03 22.23 0.22 -2.85 16 7 C -0.14 -3.40 10.04 22.32 0.22 -3.17 16 8 C -0.13 -3.53 10.03 22.23 0.22 -3.31 16 9 C -0.12 -3.52 9.79 22.52 0.22 -3.30 16 10 C 0.13 2.93 4.02 85.63 0.34 3.27 16 11 N -0.99 -25.44 3.09 -543.24 -1.68 -27.12 16 12 C 0.08 1.56 8.78 127.77 1.12 2.68 16 13 S 2.61 98.03 5.34 -56.49 -0.30 97.73 16 14 O -1.00 -43.58 17.19 -127.65 -2.19 -45.78 16 15 O -0.98 -42.33 16.88 -127.65 -2.16 -44.49 16 16 C -0.59 -23.24 6.12 71.99 0.44 -22.79 16 17 C 0.02 1.31 4.98 29.85 0.15 1.46 16 18 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 19 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 20 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 21 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 22 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 26 H 0.06 1.05 7.99 -2.39 -0.02 1.03 16 27 H 0.09 0.99 7.58 -2.39 -0.02 0.97 16 28 H 0.08 0.98 8.07 -2.39 -0.02 0.97 16 29 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 30 H 0.15 2.63 6.35 -2.91 -0.02 2.61 16 31 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 32 H 0.14 2.77 8.06 -2.92 -0.02 2.75 16 33 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.12 3.18 8.06 -2.91 -0.02 3.15 16 35 H 0.09 2.31 3.85 -2.39 -0.01 2.30 16 36 H 0.12 1.65 7.99 -2.39 -0.02 1.63 16 37 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 38 H 0.07 1.31 7.97 -2.39 -0.02 1.29 16 39 H 0.11 1.21 7.90 -2.39 -0.02 1.19 16 40 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 41 H 0.14 4.78 8.14 -2.39 -0.02 4.76 16 42 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -79.17 375.52 1.40 -77.76 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.97 Total: 23.09 kcal Atomic # 6 Polarization: -73.70 SS G_CDS: 4.45 Total: -69.26 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.39 Total: -84.52 kcal Atomic # 8 Polarization: -85.92 SS G_CDS: -4.35 Total: -90.27 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 98.03 SS G_CDS: -0.30 Total: 97.73 kcal Total: -79.17 1.40 -77.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494434359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.577 kcal (2) G-P(sol) polarization free energy of solvation -79.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds