Wall clock time and date at job start Tue Mar 31 2020 13:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32565 * 120.00296 * 2 1 4 4 C 1.47818 * 119.99952 * 7.68101 * 3 2 1 5 5 C 1.39539 * 120.13955 * 213.15478 * 4 3 2 6 6 C 1.37974 * 119.85243 * 179.71720 * 5 4 3 7 7 C 1.38348 * 120.14009 * 0.52997 * 6 5 4 8 8 C 1.38350 * 120.29024 * 359.76469 * 7 6 5 9 9 C 1.37972 * 120.13753 * 359.95427 * 8 7 6 10 10 C 1.50703 * 119.99842 * 180.27981 * 2 1 3 11 11 N 1.46501 * 109.46942 * 274.99715 * 10 2 1 12 12 C 1.46501 * 120.00023 * 275.00259 * 11 10 2 13 13 S 1.65603 * 119.99686 * 95.00247 * 11 10 2 14 14 O 1.42097 * 104.27379 * 206.06903 * 13 11 10 15 15 O 1.42102 * 104.27819 * 333.92564 * 13 11 10 16 16 C 1.81398 * 104.44823 * 89.99912 * 13 11 10 17 17 C 1.53001 * 109.46658 * 179.97438 * 16 13 11 18 18 C 1.50707 * 109.46744 * 180.02562 * 17 16 13 19 19 H 1.07993 * 120.00076 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99554 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00037 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99505 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47046 * 60.00168 * 22 20 18 24 24 H 1.48501 * 109.47006 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46968 * 299.99994 * 22 20 18 26 26 H 1.08994 * 109.46756 * 266.39904 * 1 2 3 27 27 H 1.09009 * 109.46774 * 26.39762 * 1 2 3 28 28 H 1.08994 * 109.47145 * 146.39604 * 1 2 3 29 29 H 1.07995 * 120.00670 * 187.67638 * 3 2 1 30 30 H 1.07996 * 120.07432 * 359.97257 * 5 4 3 31 31 H 1.07997 * 119.92818 * 180.27232 * 6 5 4 32 32 H 1.08002 * 119.85680 * 179.74117 * 7 6 5 33 33 H 1.07995 * 119.92872 * 179.97438 * 8 7 6 34 34 H 1.07995 * 120.07074 * 180.02562 * 9 8 7 35 35 H 1.08997 * 109.47207 * 35.00154 * 10 2 1 36 36 H 1.09006 * 109.46751 * 155.00031 * 10 2 1 37 37 H 1.08994 * 109.47358 * 89.99876 * 12 11 10 38 38 H 1.09002 * 109.46379 * 210.00190 * 12 11 10 39 39 H 1.08996 * 109.46916 * 329.99830 * 12 11 10 40 40 H 1.08998 * 109.47378 * 299.99729 * 16 13 11 41 41 H 1.08995 * 109.47194 * 59.99870 * 16 13 11 42 42 H 1.09007 * 109.47478 * 299.99588 * 17 16 13 43 43 H 1.08995 * 109.47386 * 60.00034 * 17 16 13 44 44 H 0.97005 * 119.99763 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1480 0.0000 4 6 1.4408 2.4224 0.1711 5 6 1.8899 3.5780 -0.4694 6 6 1.2015 4.7631 -0.3102 7 6 0.0746 4.8096 0.4910 8 6 -0.3723 3.6689 1.1337 9 6 0.3038 2.4763 0.9781 10 6 2.2605 -1.3051 -0.0064 11 7 2.4004 -1.7949 1.3672 12 6 3.5059 -1.3222 2.2044 13 16 1.3090 -2.8828 1.9736 14 8 1.3403 -2.6650 3.3774 15 8 0.1260 -2.6483 1.2220 16 6 2.0117 -4.5044 1.5651 17 6 1.0837 -5.6066 2.0800 18 6 1.6679 -6.9539 1.7412 19 1 2.6067 -7.0176 1.2113 20 6 1.0035 -8.1052 2.1078 21 7 -0.1395 -8.0275 2.7535 22 14 1.7279 -9.7752 1.6885 23 1 3.0611 -9.9111 2.3281 24 1 0.8272 -10.8450 2.1881 25 1 1.8708 -9.8970 0.2154 26 1 -0.3632 -0.0645 1.0256 27 1 -0.3633 0.9206 -0.4569 28 1 -0.3633 -0.8559 -0.5687 29 1 3.2426 1.1523 -0.1249 30 1 2.7719 3.5439 -1.0915 31 1 1.5454 5.6571 -0.8089 32 1 -0.4584 5.7407 0.6157 33 1 -1.2524 3.7119 1.7581 34 1 -0.0462 1.5863 1.4800 35 1 1.7132 -2.0378 -0.5994 36 1 3.2488 -1.1519 -0.4400 37 1 3.1945 -0.4303 2.7479 38 1 3.7832 -2.1018 2.9139 39 1 4.3624 -1.0831 1.5741 40 1 2.1167 -4.5931 0.4838 41 1 2.9902 -4.6051 2.0346 42 1 0.9792 -5.5179 3.1614 43 1 0.1050 -5.5061 1.6109 44 1 -0.6070 -8.8375 3.0111 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494434361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:52 Heat of formation + Delta-G solvation = -35.422269 kcal Electronic energy + Delta-G solvation = -24880.360007 eV Core-core repulsion = 21311.056509 eV Total energy + Delta-G solvation = -3569.303499 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.57802 -37.34250 -36.60932 -35.40731 -34.53240 -33.90082 -31.29042 -31.16995 -30.62079 -27.66877 -27.18373 -25.64081 -24.61129 -22.54640 -21.97745 -21.52591 -19.06533 -18.23286 -17.45603 -16.69529 -16.52844 -16.12657 -15.80740 -15.51502 -15.11800 -14.64710 -14.56629 -14.36144 -13.81455 -13.73483 -13.52273 -13.36629 -12.96572 -12.71066 -12.60712 -12.49981 -12.18559 -11.80210 -11.76591 -11.71149 -11.55206 -11.31128 -11.19565 -11.13727 -11.07867 -10.98139 -10.93675 -10.43477 -10.39070 -9.82063 -9.75907 -9.36971 -9.06553 -8.83054 -8.51438 -8.23493 -6.13630 -4.19412 0.66263 0.90796 1.25412 2.21751 3.10894 3.26163 3.31057 3.32813 3.71332 4.28239 4.37677 4.53921 4.58496 4.64852 4.74598 4.79865 4.93167 5.00070 5.10488 5.21339 5.25674 5.38977 5.41159 5.47746 5.55690 5.62476 5.65690 5.72170 5.80235 5.82210 5.84268 5.95428 5.98261 6.16673 6.26023 6.30888 6.35477 6.47231 6.55483 6.60258 6.79021 6.87624 7.28203 7.34376 7.79034 8.16142 8.83738 9.45316 10.97319 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.032645 B = 0.002529 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.516708 B =11070.434792 C =11266.562426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 C -0.128 4.128 4 C -0.048 4.048 5 C -0.112 4.112 6 C -0.125 4.125 7 C -0.124 4.124 8 C -0.122 4.122 9 C -0.113 4.113 10 C 0.160 3.840 11 N -1.004 6.004 12 C 0.097 3.903 13 S 2.587 3.413 14 O -0.964 6.964 15 O -0.957 6.957 16 C -0.590 4.590 17 C 0.029 3.971 18 C -0.521 4.521 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.812 22.698 -6.797 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.115 4.115 3 C -0.147 4.147 4 C -0.048 4.048 5 C -0.131 4.131 6 C -0.143 4.143 7 C -0.143 4.143 8 C -0.140 4.140 9 C -0.130 4.130 10 C 0.035 3.965 11 N -0.840 5.840 12 C -0.049 4.049 13 S 2.685 3.315 14 O -0.954 6.954 15 O -0.947 6.947 16 C -0.724 4.724 17 C -0.010 4.010 18 C -0.561 4.561 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.728 3.272 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.889 22.851 -6.249 24.190 hybrid contribution 0.946 -1.220 -0.453 1.609 sum 5.835 21.631 -6.702 23.385 Atomic orbital electron populations 1.21169 0.91463 1.02599 1.02690 1.22577 0.96774 0.94760 0.97368 1.21455 0.98678 0.90629 1.03942 1.19057 0.95209 0.93433 0.97127 1.21257 1.00014 0.92262 0.99520 1.21053 0.96062 0.97784 0.99354 1.21189 0.96973 0.98322 0.97770 1.21135 1.00161 0.92788 0.99951 1.21737 0.94853 0.98471 0.97986 1.20177 1.00084 0.93587 0.82648 1.57778 1.44966 1.59506 1.21714 1.21398 0.88727 1.00466 0.94265 1.05889 0.74532 0.76813 0.74273 1.93541 1.86317 1.84880 1.30659 1.93543 1.44163 1.84454 1.72545 1.30495 1.12343 1.18776 1.10743 1.18953 0.93381 0.91552 0.97133 1.20966 1.07364 0.89730 1.38015 0.92112 1.25074 0.94911 0.99617 0.94894 1.69944 1.15124 1.29157 1.38604 0.86525 0.78986 0.82917 0.78818 1.20070 1.21054 1.20067 0.90990 0.91626 0.90506 0.86316 0.86089 0.86261 0.86359 0.86032 0.84948 0.89099 0.89908 0.92765 0.90949 0.91425 0.86297 0.86390 0.94942 0.94825 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 6.88 36.01 0.25 -1.32 16 2 C -0.11 -1.32 5.57 -101.25 -0.56 -1.88 16 3 C -0.13 -1.33 9.42 -37.57 -0.35 -1.68 16 4 C -0.05 -0.52 5.21 -105.01 -0.55 -1.07 16 5 C -0.11 -1.06 9.79 -39.19 -0.38 -1.44 16 6 C -0.12 -1.08 10.03 -39.64 -0.40 -1.48 16 7 C -0.12 -1.10 10.04 -39.50 -0.40 -1.50 16 8 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 9 C -0.11 -1.26 7.59 -39.20 -0.30 -1.56 16 10 C 0.16 1.80 5.48 -5.19 -0.03 1.77 16 11 N -1.00 -13.20 3.10 -123.05 -0.38 -13.58 16 12 C 0.10 1.07 10.24 59.85 0.61 1.68 16 13 S 2.59 45.70 5.32 -107.50 -0.57 45.12 16 14 O -0.96 -19.96 17.09 -57.54 -0.98 -20.94 16 15 O -0.96 -18.50 15.16 -57.54 -0.87 -19.38 16 16 C -0.59 -11.17 6.12 37.16 0.23 -10.95 16 17 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 18 C -0.52 -14.36 9.11 -34.43 -0.31 -14.67 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 22 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H 0.07 1.00 6.72 -51.93 -0.35 0.66 16 27 H 0.07 0.76 5.98 -51.92 -0.31 0.45 16 28 H 0.08 1.04 7.81 -51.93 -0.41 0.63 16 29 H 0.12 1.02 7.98 -52.49 -0.42 0.60 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.54 5.31 -52.49 -0.28 1.26 16 35 H 0.09 1.01 7.59 -51.93 -0.39 0.62 16 36 H 0.08 0.69 7.80 -51.93 -0.41 0.28 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.80 7.79 -51.93 -0.40 0.39 16 39 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 40 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 41 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 42 H 0.03 0.87 8.14 -51.92 -0.42 0.45 16 43 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -34.00 374.66 -11.00 -45.01 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.72 Total: 1.28 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: -2.83 Total: -33.57 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.36 Total: -39.26 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.86 Total: -40.32 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 45.70 SS G_CDS: -0.57 Total: 45.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.00 -11.00 -45.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494434361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.584 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds