Wall clock time and date at job start Tue Mar 31 2020 13:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32565 * 120.00296 * 2 1 4 4 C 1.47818 * 119.99952 * 7.68101 * 3 2 1 5 5 C 1.39539 * 120.13955 * 213.15478 * 4 3 2 6 6 C 1.37974 * 119.85243 * 179.71720 * 5 4 3 7 7 C 1.38348 * 120.14009 * 0.52997 * 6 5 4 8 8 C 1.38350 * 120.29024 * 359.76469 * 7 6 5 9 9 C 1.37972 * 120.13753 * 359.95427 * 8 7 6 10 10 C 1.50703 * 119.99842 * 180.27981 * 2 1 3 11 11 N 1.46501 * 109.46942 * 274.99715 * 10 2 1 12 12 C 1.46501 * 120.00023 * 275.00259 * 11 10 2 13 13 S 1.65603 * 119.99686 * 95.00247 * 11 10 2 14 14 O 1.42097 * 104.27379 * 206.06903 * 13 11 10 15 15 O 1.42102 * 104.27819 * 333.92564 * 13 11 10 16 16 C 1.81398 * 104.44823 * 89.99912 * 13 11 10 17 17 C 1.53001 * 109.46658 * 179.97438 * 16 13 11 18 18 C 1.50707 * 109.46744 * 180.02562 * 17 16 13 19 19 H 1.07993 * 120.00076 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99554 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00037 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99505 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47046 * 60.00168 * 22 20 18 24 24 H 1.48501 * 109.47006 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46968 * 299.99994 * 22 20 18 26 26 H 1.08994 * 109.46756 * 266.39904 * 1 2 3 27 27 H 1.09009 * 109.46774 * 26.39762 * 1 2 3 28 28 H 1.08994 * 109.47145 * 146.39604 * 1 2 3 29 29 H 1.07995 * 120.00670 * 187.67638 * 3 2 1 30 30 H 1.07996 * 120.07432 * 359.97257 * 5 4 3 31 31 H 1.07997 * 119.92818 * 180.27232 * 6 5 4 32 32 H 1.08002 * 119.85680 * 179.74117 * 7 6 5 33 33 H 1.07995 * 119.92872 * 179.97438 * 8 7 6 34 34 H 1.07995 * 120.07074 * 180.02562 * 9 8 7 35 35 H 1.08997 * 109.47207 * 35.00154 * 10 2 1 36 36 H 1.09006 * 109.46751 * 155.00031 * 10 2 1 37 37 H 1.08994 * 109.47358 * 89.99876 * 12 11 10 38 38 H 1.09002 * 109.46379 * 210.00190 * 12 11 10 39 39 H 1.08996 * 109.46916 * 329.99830 * 12 11 10 40 40 H 1.08998 * 109.47378 * 299.99729 * 16 13 11 41 41 H 1.08995 * 109.47194 * 59.99870 * 16 13 11 42 42 H 1.09007 * 109.47478 * 299.99588 * 17 16 13 43 43 H 1.08995 * 109.47386 * 60.00034 * 17 16 13 44 44 H 0.97005 * 119.99763 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1480 0.0000 4 6 1.4408 2.4224 0.1711 5 6 1.8899 3.5780 -0.4694 6 6 1.2015 4.7631 -0.3102 7 6 0.0746 4.8096 0.4910 8 6 -0.3723 3.6689 1.1337 9 6 0.3038 2.4763 0.9781 10 6 2.2605 -1.3051 -0.0064 11 7 2.4004 -1.7949 1.3672 12 6 3.5059 -1.3222 2.2044 13 16 1.3090 -2.8828 1.9736 14 8 1.3403 -2.6650 3.3774 15 8 0.1260 -2.6483 1.2220 16 6 2.0117 -4.5044 1.5651 17 6 1.0837 -5.6066 2.0800 18 6 1.6679 -6.9539 1.7412 19 1 2.6067 -7.0176 1.2113 20 6 1.0035 -8.1052 2.1078 21 7 -0.1395 -8.0275 2.7535 22 14 1.7279 -9.7752 1.6885 23 1 3.0611 -9.9111 2.3281 24 1 0.8272 -10.8450 2.1881 25 1 1.8708 -9.8970 0.2154 26 1 -0.3632 -0.0645 1.0256 27 1 -0.3633 0.9206 -0.4569 28 1 -0.3633 -0.8559 -0.5687 29 1 3.2426 1.1523 -0.1249 30 1 2.7719 3.5439 -1.0915 31 1 1.5454 5.6571 -0.8089 32 1 -0.4584 5.7407 0.6157 33 1 -1.2524 3.7119 1.7581 34 1 -0.0462 1.5863 1.4800 35 1 1.7132 -2.0378 -0.5994 36 1 3.2488 -1.1519 -0.4400 37 1 3.1945 -0.4303 2.7479 38 1 3.7832 -2.1018 2.9139 39 1 4.3624 -1.0831 1.5741 40 1 2.1167 -4.5931 0.4838 41 1 2.9902 -4.6051 2.0346 42 1 0.9792 -5.5179 3.1614 43 1 0.1050 -5.5061 1.6109 44 1 -0.6070 -8.8375 3.0111 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494434361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:51 Heat of formation + Delta-G solvation = -56.204282 kcal Electronic energy + Delta-G solvation = -24881.261183 eV Core-core repulsion = 21311.056509 eV Total energy + Delta-G solvation = -3570.204674 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32280 -38.34542 -38.03590 -36.92828 -35.89666 -35.43865 -33.12732 -32.01868 -31.39869 -28.59507 -28.03519 -27.59631 -25.60376 -23.48773 -23.27370 -22.69410 -20.14730 -19.42099 -18.91673 -18.24543 -17.48752 -17.28328 -17.16495 -16.55038 -16.36453 -16.07541 -15.84020 -15.29719 -15.02870 -14.61871 -14.53447 -14.50516 -14.34810 -13.94532 -13.72339 -13.60046 -13.43699 -13.24146 -13.11702 -12.91219 -12.85600 -12.80710 -12.63695 -12.47930 -12.24025 -12.16212 -12.11313 -11.87321 -11.76621 -11.74174 -11.15180 -10.64839 -10.58606 -9.98247 -9.78650 -9.03672 -8.26630 -6.41118 -0.71417 0.08390 0.52996 1.37805 1.40279 1.43978 1.52168 1.91519 2.37660 2.88617 2.97954 3.06426 3.22007 3.71215 3.75624 3.99096 4.05820 4.10403 4.12686 4.18685 4.22870 4.36394 4.51332 4.62500 4.68917 4.69722 4.72142 4.76644 4.81676 4.84713 4.99523 5.03258 5.11482 5.16699 5.22539 5.25838 5.26831 5.46331 5.53491 5.64236 5.64498 5.67269 5.75609 5.97350 6.05306 6.14878 6.72450 7.29107 8.85394 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.032645 B = 0.002529 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.516708 B =11070.434792 C =11266.562426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 C -0.105 4.105 4 C -0.071 4.071 5 C -0.113 4.113 6 C -0.127 4.127 7 C -0.126 4.126 8 C -0.137 4.137 9 C -0.133 4.133 10 C 0.154 3.846 11 N -0.992 5.992 12 C 0.087 3.913 13 S 2.607 3.393 14 O -0.999 6.999 15 O -0.980 6.980 16 C -0.589 4.589 17 C 0.022 3.978 18 C -0.540 4.540 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.284 1.284 25 H -0.262 1.262 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.002 0.998 43 H 0.006 0.994 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.815 24.193 -8.666 27.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.141 4.141 3 C -0.124 4.124 4 C -0.071 4.071 5 C -0.131 4.131 6 C -0.145 4.145 7 C -0.144 4.144 8 C -0.155 4.155 9 C -0.151 4.151 10 C 0.030 3.970 11 N -0.830 5.830 12 C -0.058 4.058 13 S 2.704 3.296 14 O -0.989 6.989 15 O -0.970 6.970 16 C -0.721 4.721 17 C -0.017 4.017 18 C -0.579 4.579 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.574 5.574 22 Si 0.798 3.202 23 H -0.187 1.187 24 H -0.210 1.210 25 H -0.187 1.187 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.165 0.835 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.143 0.857 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.128 0.872 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.021 0.979 43 H 0.025 0.975 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.900 24.340 -8.122 26.848 hybrid contribution -0.005 -1.463 0.115 1.467 sum 7.895 22.878 -8.007 25.492 Atomic orbital electron populations 1.21068 0.93240 1.02087 1.01032 1.22493 0.95760 0.95679 1.00180 1.21724 0.99855 0.89830 1.00995 1.19258 0.95480 0.94404 0.97955 1.21554 1.00604 0.91816 0.99131 1.21435 0.95603 0.98602 0.98872 1.21521 0.97141 0.98704 0.97039 1.21344 1.00607 0.92945 1.00554 1.21758 0.95808 0.98528 0.98982 1.20475 1.02287 0.93104 0.81164 1.57373 1.44771 1.57911 1.22984 1.21691 0.89068 1.00146 0.94877 1.04978 0.74622 0.76715 0.73273 1.93487 1.87016 1.85342 1.33102 1.93511 1.46054 1.84676 1.72769 1.30394 1.11753 1.17764 1.12169 1.18801 0.93782 0.93831 0.95317 1.21496 1.07912 0.90756 1.37728 0.90564 1.26152 0.95233 1.04341 0.94652 1.70101 1.16862 1.30373 1.40091 0.85353 0.78394 0.77263 0.79187 1.18709 1.20994 1.18655 0.93298 0.91095 0.92120 0.83529 0.83853 0.83611 0.84146 0.85244 0.86609 0.89505 0.85679 0.93095 0.91232 0.87236 0.83961 0.84338 0.97926 0.97533 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 6.88 71.24 0.49 -2.67 16 2 C -0.14 -3.09 5.57 -17.60 -0.10 -3.19 16 3 C -0.10 -1.93 9.42 23.66 0.22 -1.71 16 4 C -0.07 -1.43 5.21 -20.12 -0.10 -1.53 16 5 C -0.11 -1.81 9.79 22.52 0.22 -1.59 16 6 C -0.13 -1.84 10.03 22.23 0.22 -1.61 16 7 C -0.13 -1.98 10.04 22.32 0.22 -1.76 16 8 C -0.14 -2.63 10.03 22.23 0.22 -2.41 16 9 C -0.13 -2.99 7.59 22.52 0.17 -2.82 16 10 C 0.15 3.11 5.48 85.63 0.47 3.57 16 11 N -0.99 -24.62 3.10 -543.22 -1.68 -26.30 16 12 C 0.09 1.69 10.24 127.77 1.31 3.00 16 13 S 2.61 94.00 5.32 -56.49 -0.30 93.70 16 14 O -1.00 -42.85 17.09 -127.65 -2.18 -45.03 16 15 O -0.98 -39.64 15.16 -127.65 -1.94 -41.57 16 16 C -0.59 -22.28 6.12 71.98 0.44 -21.84 16 17 C 0.02 1.14 4.98 29.85 0.15 1.29 16 18 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 19 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16 20 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 21 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 22 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 H 0.05 1.49 6.72 -2.39 -0.02 1.47 16 27 H 0.07 1.73 5.98 -2.38 -0.01 1.72 16 28 H 0.06 1.75 7.81 -2.39 -0.02 1.73 16 29 H 0.15 1.84 7.98 -2.91 -0.02 1.81 16 30 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 32 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 34 H 0.12 2.91 5.31 -2.91 -0.02 2.89 16 35 H 0.09 1.83 7.59 -2.39 -0.02 1.81 16 36 H 0.13 1.50 7.80 -2.38 -0.02 1.48 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 39 H 0.11 1.24 7.94 -2.39 -0.02 1.23 16 40 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 41 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 42 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 43 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -76.96 374.66 1.82 -75.15 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.97 Total: 18.70 kcal Atomic # 6 Polarization: -67.54 SS G_CDS: 4.63 Total: -62.91 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -1.40 Total: -83.31 kcal Atomic # 8 Polarization: -82.49 SS G_CDS: -4.12 Total: -86.61 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 94.00 SS G_CDS: -0.30 Total: 93.70 kcal Total: -76.96 1.82 -75.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494434361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.943 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds