Wall clock time and date at job start Tue Mar 31 2020 14:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46923 * 2 1 4 4 C 1.53001 * 109.47288 * 240.00413 * 2 1 3 5 5 O 1.45199 * 109.47482 * 119.99879 * 2 1 3 6 6 C 1.34652 * 116.99801 * 59.99970 * 5 2 1 7 7 O 1.21511 * 119.99991 * 0.02562 * 6 5 2 8 8 N 1.34769 * 120.00314 * 180.02562 * 6 5 2 9 9 C 1.39956 * 120.00429 * 185.31681 * 8 6 5 10 10 C 1.38884 * 120.06415 * 33.25886 * 9 8 6 11 11 C 1.38095 * 119.92423 * 179.97438 * 10 9 8 12 12 C 1.38308 * 120.07180 * 0.27913 * 11 10 9 13 13 C 1.38258 * 120.13604 * 359.44801 * 12 11 10 14 14 C 1.50699 * 119.96348 * 180.27926 * 13 12 11 15 15 S 1.81404 * 109.46837 * 270.27436 * 14 13 12 16 16 C 1.81394 * 102.99860 * 179.97438 * 15 14 13 17 17 C 1.50710 * 109.47181 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99793 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00061 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00449 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00087 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46996 * 89.99636 * 21 19 17 23 23 H 1.48498 * 109.47600 * 209.99980 * 21 19 17 24 24 H 1.48500 * 109.46913 * 330.00239 * 21 19 17 25 25 C 1.38139 * 120.07191 * 0.55025 * 13 12 11 26 26 H 1.09000 * 109.47212 * 299.99920 * 1 2 3 27 27 H 1.09005 * 109.47117 * 60.00091 * 1 2 3 28 28 H 1.09001 * 109.46773 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46747 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47698 * 299.99643 * 3 2 1 31 31 H 1.09000 * 109.47111 * 60.00018 * 3 2 1 32 32 H 1.09001 * 109.47014 * 299.99608 * 4 2 1 33 33 H 1.08992 * 109.47118 * 59.99626 * 4 2 1 34 34 H 1.08997 * 109.46824 * 180.02562 * 4 2 1 35 35 H 0.97011 * 119.99673 * 5.31409 * 8 6 5 36 36 H 1.08000 * 120.03977 * 0.02562 * 10 9 8 37 37 H 1.08004 * 119.96410 * 180.02562 * 11 10 9 38 38 H 1.08001 * 119.92832 * 179.72483 * 12 11 10 39 39 H 1.09001 * 109.46951 * 30.26874 * 14 13 12 40 40 H 1.08994 * 109.47446 * 150.27218 * 14 13 12 41 41 H 1.09002 * 109.47684 * 299.99956 * 16 15 14 42 42 H 1.09003 * 109.47414 * 60.00394 * 16 15 14 43 43 H 0.96998 * 120.00601 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.03457 * 179.74550 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6844 1.1855 6 6 1.6523 -1.9724 1.3383 7 8 0.9517 -2.5098 0.5036 8 7 2.0673 -2.6655 2.4171 9 6 1.7855 -4.0325 2.5215 10 6 1.7371 -4.8221 1.3800 11 6 1.4594 -6.1706 1.4865 12 6 1.2239 -6.7338 2.7275 13 6 1.2769 -5.9515 3.8662 14 6 1.0259 -6.5705 5.2171 15 16 -0.7452 -6.4873 5.6005 16 6 -0.8460 -7.2680 7.2348 17 6 -2.2793 -7.2756 7.7004 18 1 -3.0523 -6.8535 7.0754 19 6 -2.6037 -7.8215 8.9242 20 7 -1.6625 -8.3361 9.6851 21 14 -4.3802 -7.8304 9.5016 22 1 -5.0420 -9.0798 9.0476 23 1 -4.4192 -7.7602 10.9844 24 1 -5.0917 -6.6581 8.9317 25 6 1.5543 -4.6019 3.7665 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6768 -1.7489 -1.2493 33 1 1.6767 -0.2073 -2.1392 34 1 3.1300 -0.7215 -1.2490 35 1 2.5613 -2.2169 3.1212 36 1 1.9173 -4.3822 0.4103 37 1 1.4220 -6.7854 0.5993 38 1 1.0025 -7.7879 2.8077 39 1 1.3464 -7.6122 5.2046 40 1 1.5879 -6.0265 5.9762 41 1 -0.4787 -8.2923 7.1715 42 1 -0.2371 -6.7068 7.9437 43 1 -1.8907 -8.7205 10.5459 44 1 1.5915 -3.9905 4.6560 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496496697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:51 Heat of formation + Delta-G solvation = -68.476077 kcal Electronic energy + Delta-G solvation = -23982.519038 eV Core-core repulsion = 20411.782219 eV Total energy + Delta-G solvation = -3570.736819 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29991 -39.50893 -37.44677 -35.18576 -34.23204 -33.14070 -32.32556 -29.77796 -28.54440 -27.76426 -27.69534 -26.82705 -23.87845 -23.09386 -22.31432 -21.12851 -20.12252 -18.53537 -17.40989 -16.69805 -16.50568 -16.27204 -15.93888 -15.28699 -15.26072 -14.84147 -14.56996 -14.54851 -14.02620 -13.71705 -13.44725 -13.08630 -12.87802 -12.77950 -12.64288 -12.43025 -12.28469 -12.23074 -12.22021 -11.89912 -11.79667 -11.78433 -11.43655 -11.18451 -10.87393 -10.81993 -10.69511 -10.47040 -10.24104 -9.99697 -9.57122 -8.88809 -8.61277 -8.58287 -8.12201 -6.67926 -6.19066 -4.23093 1.24349 1.35001 1.84004 2.54406 2.80809 3.26778 3.32328 3.38134 3.78538 3.86660 3.95933 4.35789 4.36236 4.41054 4.55071 4.82947 4.90946 5.12040 5.16190 5.18034 5.20360 5.21729 5.33982 5.35488 5.40985 5.44572 5.52702 5.55339 5.63668 5.70144 5.86349 5.95274 6.01403 6.03397 6.16309 6.27456 6.34511 6.55275 6.71030 7.02434 7.09731 7.11249 7.12911 7.75693 8.01812 8.07235 8.78883 9.39925 10.92165 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.002225 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.185413 B =12583.185856 C =13392.933023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.362 6.362 6 C 0.652 3.348 7 O -0.548 6.548 8 N -0.650 5.650 9 C 0.155 3.845 10 C -0.124 4.124 11 C -0.100 4.100 12 C -0.115 4.115 13 C -0.034 4.034 14 C -0.055 4.055 15 S -0.293 6.293 16 C 0.087 3.913 17 C -0.511 4.511 18 H 0.067 0.933 19 C 0.065 3.935 20 N -0.893 5.893 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.271 1.271 25 C -0.125 4.125 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.415 0.585 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.265 0.735 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.105 15.196 -19.727 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.277 6.277 6 C 0.406 3.594 7 O -0.436 6.436 8 N -0.302 5.302 9 C 0.062 3.938 10 C -0.144 4.144 11 C -0.119 4.119 12 C -0.135 4.135 13 C -0.035 4.035 14 C -0.203 4.203 15 S -0.065 6.065 16 C -0.059 4.059 17 C -0.550 4.550 18 H 0.085 0.915 19 C -0.139 4.139 20 N -0.532 5.532 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.147 4.147 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.252 0.748 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.980 15.399 -20.621 27.981 hybrid contribution 0.244 -0.293 1.530 1.577 sum 11.224 15.106 -19.091 26.807 Atomic orbital electron populations 1.22536 0.93719 1.05340 1.02682 1.22129 0.94582 0.91496 0.81820 1.21870 1.02237 0.92410 1.03283 1.22526 1.01546 1.03577 0.96479 1.86304 1.71235 1.23344 1.46838 1.18000 0.78589 0.80635 0.82201 1.90933 1.39517 1.70130 1.42973 1.42011 1.58371 1.07863 1.21905 1.17339 1.01421 0.80576 0.94452 1.21058 1.02096 0.93384 0.97909 1.20962 0.99184 0.94290 0.97473 1.21086 1.00309 1.00424 0.91707 1.19141 0.97384 0.92771 0.94244 1.22203 0.99068 1.03164 0.95855 1.86933 1.06042 1.82170 1.31315 1.21079 1.01355 0.97009 0.86492 1.20679 0.91422 1.39949 1.02971 0.91493 1.24965 0.98162 0.94776 0.96010 1.69952 1.32679 1.38956 1.11580 0.86352 0.83842 0.78761 0.77721 1.20333 1.20985 1.19553 1.20687 1.02852 0.95166 0.96022 0.91985 0.91003 0.89220 0.91447 0.90016 0.91346 0.89328 0.90982 0.92132 0.74820 0.84998 0.85626 0.85527 0.89726 0.89921 0.94599 0.94636 0.92523 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 8.37 37.16 0.31 -1.35 16 2 C 0.14 1.17 1.13 -90.62 -0.10 1.07 16 3 C -0.14 -0.84 8.85 37.16 0.33 -0.51 16 4 C -0.18 -1.49 8.37 37.16 0.31 -1.18 16 5 O -0.36 -3.80 9.94 -40.36 -0.40 -4.20 16 6 C 0.65 7.88 7.79 54.05 0.42 8.30 16 7 O -0.55 -7.69 9.57 -19.28 -0.18 -7.87 16 8 N -0.65 -7.19 5.35 -14.27 -0.08 -7.27 16 9 C 0.15 2.01 6.28 -83.69 -0.53 1.48 16 10 C -0.12 -1.61 8.65 -39.39 -0.34 -1.96 16 11 C -0.10 -1.25 10.04 -39.61 -0.40 -1.65 16 12 C -0.11 -1.58 9.70 -39.55 -0.38 -1.96 16 13 C -0.03 -0.50 5.14 -104.65 -0.54 -1.04 16 14 C -0.06 -0.93 6.07 36.01 0.22 -0.71 16 15 S -0.29 -6.43 21.64 -107.50 -2.33 -8.76 16 16 C 0.09 2.27 5.70 36.01 0.21 2.48 16 17 C -0.51 -14.51 9.13 -34.44 -0.31 -14.82 16 18 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 19 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 20 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 21 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.13 -1.71 9.62 -39.39 -0.38 -2.09 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.92 5.88 -51.93 -0.31 0.61 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.42 3.44 8.93 -40.82 -0.36 3.08 16 36 H 0.13 1.71 6.41 -52.49 -0.34 1.37 16 37 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.08 1.35 8.09 -51.92 -0.42 0.93 16 40 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 41 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 42 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 43 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 377.68 15.07 5.69 5.69 Total: -1.00 -31.62 377.68 -9.63 -41.24 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.76 Total: 2.16 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.28 Total: -12.22 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.66 Total: -32.54 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.59 Total: -12.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -6.43 SS G_CDS: -2.33 Total: -8.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.62 -9.63 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496496697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.232 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds