Wall clock time and date at job start Tue Mar 31 2020 14:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46923 * 2 1 4 4 C 1.53001 * 109.47288 * 240.00413 * 2 1 3 5 5 O 1.45199 * 109.47482 * 119.99879 * 2 1 3 6 6 C 1.34652 * 116.99801 * 59.99970 * 5 2 1 7 7 O 1.21511 * 119.99991 * 0.02562 * 6 5 2 8 8 N 1.34769 * 120.00314 * 180.02562 * 6 5 2 9 9 C 1.39956 * 120.00429 * 185.31681 * 8 6 5 10 10 C 1.38884 * 120.06415 * 33.25886 * 9 8 6 11 11 C 1.38095 * 119.92423 * 179.97438 * 10 9 8 12 12 C 1.38308 * 120.07180 * 0.27913 * 11 10 9 13 13 C 1.38258 * 120.13604 * 359.44801 * 12 11 10 14 14 C 1.50699 * 119.96348 * 180.27926 * 13 12 11 15 15 S 1.81404 * 109.46837 * 270.27436 * 14 13 12 16 16 C 1.81394 * 102.99860 * 179.97438 * 15 14 13 17 17 C 1.50710 * 109.47181 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99793 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00061 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00449 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00087 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46996 * 89.99636 * 21 19 17 23 23 H 1.48498 * 109.47600 * 209.99980 * 21 19 17 24 24 H 1.48500 * 109.46913 * 330.00239 * 21 19 17 25 25 C 1.38139 * 120.07191 * 0.55025 * 13 12 11 26 26 H 1.09000 * 109.47212 * 299.99920 * 1 2 3 27 27 H 1.09005 * 109.47117 * 60.00091 * 1 2 3 28 28 H 1.09001 * 109.46773 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46747 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47698 * 299.99643 * 3 2 1 31 31 H 1.09000 * 109.47111 * 60.00018 * 3 2 1 32 32 H 1.09001 * 109.47014 * 299.99608 * 4 2 1 33 33 H 1.08992 * 109.47118 * 59.99626 * 4 2 1 34 34 H 1.08997 * 109.46824 * 180.02562 * 4 2 1 35 35 H 0.97011 * 119.99673 * 5.31409 * 8 6 5 36 36 H 1.08000 * 120.03977 * 0.02562 * 10 9 8 37 37 H 1.08004 * 119.96410 * 180.02562 * 11 10 9 38 38 H 1.08001 * 119.92832 * 179.72483 * 12 11 10 39 39 H 1.09001 * 109.46951 * 30.26874 * 14 13 12 40 40 H 1.08994 * 109.47446 * 150.27218 * 14 13 12 41 41 H 1.09002 * 109.47684 * 299.99956 * 16 15 14 42 42 H 1.09003 * 109.47414 * 60.00394 * 16 15 14 43 43 H 0.96998 * 120.00601 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.03457 * 179.74550 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6844 1.1855 6 6 1.6523 -1.9724 1.3383 7 8 0.9517 -2.5098 0.5036 8 7 2.0673 -2.6655 2.4171 9 6 1.7855 -4.0325 2.5215 10 6 1.7371 -4.8221 1.3800 11 6 1.4594 -6.1706 1.4865 12 6 1.2239 -6.7338 2.7275 13 6 1.2769 -5.9515 3.8662 14 6 1.0259 -6.5705 5.2171 15 16 -0.7452 -6.4873 5.6005 16 6 -0.8460 -7.2680 7.2348 17 6 -2.2793 -7.2756 7.7004 18 1 -3.0523 -6.8535 7.0754 19 6 -2.6037 -7.8215 8.9242 20 7 -1.6625 -8.3361 9.6851 21 14 -4.3802 -7.8304 9.5016 22 1 -5.0420 -9.0798 9.0476 23 1 -4.4192 -7.7602 10.9844 24 1 -5.0917 -6.6581 8.9317 25 6 1.5543 -4.6019 3.7665 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6768 -1.7489 -1.2493 33 1 1.6767 -0.2073 -2.1392 34 1 3.1300 -0.7215 -1.2490 35 1 2.5613 -2.2169 3.1212 36 1 1.9173 -4.3822 0.4103 37 1 1.4220 -6.7854 0.5993 38 1 1.0025 -7.7879 2.8077 39 1 1.3464 -7.6122 5.2046 40 1 1.5879 -6.0265 5.9762 41 1 -0.4787 -8.2923 7.1715 42 1 -0.2371 -6.7068 7.9437 43 1 -1.8907 -8.7205 10.5459 44 1 1.5915 -3.9905 4.6560 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496496697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:50 Heat of formation + Delta-G solvation = -85.666091 kcal Electronic energy + Delta-G solvation = -23983.264453 eV Core-core repulsion = 20411.782219 eV Total energy + Delta-G solvation = -3571.482234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.19461 -40.48348 -38.33678 -36.16261 -35.29144 -34.97305 -33.45324 -30.81004 -30.66150 -28.36887 -28.30278 -28.06209 -25.20766 -24.75807 -23.38117 -22.07081 -21.02840 -19.39071 -18.76383 -18.24869 -17.57323 -17.27897 -17.02794 -16.88027 -16.38709 -16.27390 -15.66664 -15.36196 -15.06200 -14.82841 -14.58432 -14.51617 -14.45904 -14.11857 -13.85551 -13.49725 -13.32275 -13.16984 -12.94357 -12.89988 -12.77641 -12.74117 -12.62974 -12.53427 -12.27146 -12.20452 -12.13679 -11.65126 -11.43695 -11.32571 -11.05418 -10.74916 -10.72230 -9.72933 -9.17304 -8.46647 -8.33429 -6.46434 0.09435 0.28418 0.98314 1.23785 1.39965 1.40701 1.53374 1.67197 2.04178 2.36481 2.87588 2.99188 3.00822 3.64565 3.73108 3.78949 3.85413 3.93684 4.09490 4.23428 4.34674 4.42643 4.55076 4.59733 4.62491 4.63369 4.74679 4.77323 4.85579 4.88519 4.95353 4.96019 4.97956 5.11883 5.24334 5.25542 5.28614 5.32404 5.42990 5.56505 5.56949 5.61561 5.89214 5.99086 6.24100 6.60653 7.18155 7.21346 8.78248 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.002225 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.185413 B =12583.185856 C =13392.933023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.125 3.875 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.362 6.362 6 C 0.649 3.351 7 O -0.569 6.569 8 N -0.644 5.644 9 C 0.153 3.847 10 C -0.127 4.127 11 C -0.096 4.096 12 C -0.120 4.120 13 C -0.052 4.052 14 C -0.038 4.038 15 S -0.310 6.310 16 C 0.091 3.909 17 C -0.536 4.536 18 H 0.059 0.941 19 C 0.015 3.985 20 N -0.924 5.924 21 Si 0.975 3.025 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.267 1.267 25 C -0.127 4.127 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.428 0.572 36 H 0.133 0.867 37 H 0.152 0.848 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.270 0.730 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.238 16.456 -20.989 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.089 3.911 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.277 6.277 6 C 0.404 3.596 7 O -0.459 6.459 8 N -0.296 5.296 9 C 0.060 3.940 10 C -0.148 4.148 11 C -0.115 4.115 12 C -0.140 4.140 13 C -0.054 4.054 14 C -0.185 4.185 15 S -0.081 6.081 16 C -0.056 4.056 17 C -0.575 4.575 18 H 0.077 0.923 19 C -0.186 4.186 20 N -0.563 5.563 21 Si 0.798 3.202 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.192 1.192 25 C -0.150 4.150 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.267 0.733 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.153 0.847 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.079 0.921 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.127 16.679 -21.873 29.672 hybrid contribution 0.310 -0.610 1.774 1.901 sum 11.438 16.068 -20.099 28.160 Atomic orbital electron populations 1.22502 0.94177 1.03659 1.03669 1.22493 0.94434 0.92827 0.81339 1.21899 1.02600 0.90394 1.04399 1.22482 1.01819 1.02265 0.97155 1.86327 1.71091 1.22394 1.47859 1.18131 0.78330 0.81117 0.82030 1.90929 1.40454 1.70719 1.43754 1.41947 1.58208 1.07304 1.22180 1.17382 1.01037 0.81393 0.94203 1.21232 1.01720 0.93796 0.98011 1.21227 0.97996 0.94305 0.97954 1.21259 1.00100 1.00883 0.91802 1.19057 0.99361 0.93491 0.93468 1.22215 0.94645 1.04267 0.97393 1.86785 1.11624 1.81477 1.28231 1.20754 1.00022 0.95982 0.88842 1.20984 0.92378 1.40514 1.03609 0.92264 1.25895 1.02759 0.94006 0.95967 1.70048 1.34857 1.39336 1.12025 0.85294 0.78284 0.79028 0.77551 1.19383 1.19910 1.19174 1.20773 1.02580 0.94883 0.96718 0.92173 0.88871 0.92110 0.90891 0.87827 0.91304 0.91815 0.88967 0.91606 0.73332 0.84899 0.83038 0.84712 0.88862 0.89002 0.96521 0.96548 0.92059 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 8.37 71.98 0.60 -2.50 16 2 C 0.12 1.96 1.13 -10.79 -0.01 1.95 16 3 C -0.14 -1.28 8.85 71.98 0.64 -0.64 16 4 C -0.18 -2.67 8.37 71.98 0.60 -2.07 16 5 O -0.36 -7.22 9.94 -55.61 -0.55 -7.78 16 6 C 0.65 15.31 7.79 129.79 1.01 16.32 16 7 O -0.57 -15.89 9.57 19.81 0.19 -15.70 16 8 N -0.64 -13.65 5.35 -429.47 -2.30 -15.95 16 9 C 0.15 3.81 6.28 38.14 0.24 4.05 16 10 C -0.13 -3.16 8.65 22.39 0.19 -2.96 16 11 C -0.10 -2.24 10.04 22.25 0.22 -2.02 16 12 C -0.12 -3.13 9.70 22.29 0.22 -2.92 16 13 C -0.05 -1.50 5.14 -19.88 -0.10 -1.60 16 14 C -0.04 -1.25 6.07 71.24 0.43 -0.82 16 15 S -0.31 -13.77 21.64 -56.49 -1.22 -14.99 16 16 C 0.09 4.90 5.70 71.24 0.41 5.30 16 17 C -0.54 -31.09 9.13 25.60 0.23 -30.86 16 18 H 0.06 3.45 7.71 -2.91 -0.02 3.43 16 19 C 0.01 0.82 5.46 84.65 0.46 1.29 16 20 N -0.92 -54.47 13.29 21.45 0.28 -54.19 16 21 Si 0.98 44.15 29.54 68.60 2.03 46.18 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 C -0.13 -3.36 9.62 22.39 0.22 -3.14 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.12 8.14 -2.38 -0.02 1.11 16 28 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 29 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 1.30 5.88 -2.39 -0.01 1.28 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.43 6.61 8.93 -92.70 -0.83 5.79 16 36 H 0.13 3.32 6.41 -2.91 -0.02 3.30 16 37 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 39 H 0.09 2.92 8.09 -2.39 -0.02 2.90 16 40 H 0.09 2.86 8.08 -2.39 -0.02 2.84 16 41 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -68.72 377.68 3.96 -64.76 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.17 Total: 18.28 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 5.36 Total: -20.61 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -2.01 Total: -70.14 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.36 Total: -23.48 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -13.77 SS G_CDS: -1.22 Total: -14.99 kcal Total: -68.72 3.96 -64.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496496697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.907 kcal (2) G-P(sol) polarization free energy of solvation -68.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds