Wall clock time and date at job start Tue Mar 31 2020 14:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46703 * 2 1 4 4 O 1.42900 * 109.47231 * 240.00534 * 2 1 3 5 5 C 1.53001 * 109.46930 * 119.99962 * 2 1 3 6 6 C 1.52998 * 109.46983 * 60.00469 * 5 2 1 7 7 S 1.81397 * 109.46799 * 179.97438 * 6 5 2 8 8 C 1.81401 * 102.99816 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47126 * 180.02562 * 8 7 6 10 10 O 1.21276 * 119.99579 * 354.83761 * 9 8 7 11 11 N 1.34778 * 119.99824 * 174.84329 * 9 8 7 12 12 C 1.37142 * 120.00088 * 5.67568 * 11 9 8 13 13 H 1.07994 * 120.00120 * 55.66883 * 12 11 9 14 14 C 1.38882 * 119.99783 * 235.66404 * 12 11 9 15 15 N 1.31424 * 120.00170 * 9.25079 * 14 12 11 16 16 Si 1.86805 * 120.00198 * 189.24869 * 14 12 11 17 17 H 1.48507 * 109.46835 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47114 * 119.99900 * 16 14 12 19 19 H 1.48497 * 109.47091 * 240.00514 * 16 14 12 20 20 C 1.39790 * 119.99838 * 185.67125 * 11 9 8 21 21 C 1.38959 * 120.07739 * 175.18889 * 20 11 9 22 22 C 1.38080 * 119.91795 * 179.97438 * 21 20 11 23 23 C 1.38308 * 120.08470 * 0.02562 * 22 21 20 24 24 C 1.38311 * 120.15006 * 359.97438 * 23 22 21 25 25 C 1.38079 * 120.08086 * 0.02562 * 24 23 22 26 26 H 1.08995 * 109.47401 * 299.99684 * 1 2 3 27 27 H 1.09007 * 109.47194 * 60.00062 * 1 2 3 28 28 H 1.09001 * 109.46692 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46574 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47472 * 299.99879 * 3 2 1 31 31 H 1.09003 * 109.46815 * 59.99773 * 3 2 1 32 32 H 0.96698 * 113.99753 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.47084 * 299.99922 * 5 2 1 34 34 H 1.08996 * 109.46659 * 180.02562 * 5 2 1 35 35 H 1.08995 * 109.47146 * 59.99769 * 6 5 2 36 36 H 1.09002 * 109.47266 * 299.99927 * 6 5 2 37 37 H 1.08993 * 109.47598 * 60.00134 * 8 7 6 38 38 H 1.09000 * 109.47043 * 299.99869 * 8 7 6 39 39 H 0.96996 * 120.00296 * 184.97981 * 15 14 12 40 40 H 1.07999 * 120.03828 * 359.71039 * 21 20 11 41 41 H 1.08006 * 119.95690 * 179.97438 * 22 21 20 42 42 H 1.07991 * 119.92287 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.95893 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.04142 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 1.5301 -2.1637 1.2492 7 16 2.1353 -3.0190 2.7299 8 6 1.4388 -4.6846 2.5524 9 6 1.8579 -5.5320 3.7261 10 8 2.6325 -5.0895 4.5476 11 7 1.3718 -6.7817 3.8626 12 6 0.5892 -7.3246 2.8759 13 1 0.9576 -7.3772 1.8621 14 6 -0.6770 -7.8070 3.1806 15 7 -1.1984 -7.5819 4.3658 16 14 -1.6393 -8.7757 1.9057 17 1 -0.8363 -8.8906 0.6617 18 1 -1.9319 -10.1328 2.4325 19 1 -2.9141 -8.0741 1.6095 20 6 1.6655 -7.5244 5.0098 21 6 1.0852 -8.7728 5.1988 22 6 1.3781 -9.5039 6.3330 23 6 2.2474 -8.9949 7.2806 24 6 2.8268 -7.7526 7.0958 25 6 2.5386 -7.0160 5.9640 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 2.9704 -0.7120 -1.2327 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7208 1.2495 35 1 1.8934 -2.6775 0.3592 36 1 0.4400 -2.1638 1.2491 37 1 1.8044 -5.1349 1.6297 38 1 0.3511 -4.6219 2.5200 39 1 -2.0506 -7.9791 4.6042 40 1 0.4027 -9.1689 4.4614 41 1 0.9270 -10.4741 6.4806 42 1 2.4743 -9.5687 8.1669 43 1 3.5055 -7.3583 7.8376 44 1 2.9910 -6.0460 5.8205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566472501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:53 Heat of formation + Delta-G solvation = -48.732336 kcal Electronic energy + Delta-G solvation = -24764.827687 eV Core-core repulsion = 21194.947021 eV Total energy + Delta-G solvation = -3569.880666 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.72118 -38.74562 -37.22058 -35.08940 -33.47493 -32.03987 -30.64755 -30.21595 -29.61564 -27.80110 -27.60116 -25.24523 -23.90421 -21.84659 -21.20968 -20.40800 -19.53158 -17.87853 -16.66765 -16.35662 -16.01172 -15.69240 -15.57696 -15.22007 -14.79263 -14.61243 -14.41034 -14.13435 -13.47944 -13.30080 -13.13934 -12.84326 -12.62667 -12.58956 -12.42200 -12.30610 -12.25462 -11.95633 -11.73074 -11.59131 -11.48906 -11.33016 -11.20129 -11.17340 -10.87840 -10.78602 -10.50628 -10.09017 -10.04509 -9.50938 -9.29426 -8.80489 -8.23972 -7.81799 -7.24519 -6.93924 -6.37486 -4.63466 1.90705 2.38013 2.54482 2.95635 2.98970 3.07926 3.10939 3.65715 3.89656 4.01519 4.45847 4.54401 4.63175 4.67610 4.77450 5.03039 5.08923 5.17604 5.36874 5.47622 5.54635 5.64275 5.66715 5.70123 5.73950 5.79948 5.86063 5.91096 5.98475 6.02002 6.08649 6.12254 6.15215 6.68198 6.70887 6.87775 7.11273 7.17565 7.47893 7.48410 7.59136 7.65205 7.73071 8.00334 8.38346 8.76390 9.14182 9.52788 10.39959 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.003297 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.680193 B = 8491.709986 C =10014.384002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.130 3.870 3 C -0.177 4.177 4 O -0.560 6.560 5 C -0.125 4.125 6 C -0.101 4.101 7 S -0.213 6.213 8 C -0.088 4.088 9 C 0.509 3.491 10 O -0.547 6.547 11 N -0.379 5.379 12 C -0.373 4.373 13 H 0.094 0.906 14 C 0.057 3.943 15 N -0.838 5.838 16 Si 0.913 3.087 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.276 1.276 20 C 0.184 3.816 21 C -0.105 4.105 22 C -0.124 4.124 23 C -0.172 4.172 24 C -0.120 4.120 25 C -0.191 4.191 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.375 0.625 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.275 0.725 40 H 0.131 0.869 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.674 9.711 -6.903 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.088 3.912 3 C -0.235 4.235 4 O -0.366 6.366 5 C -0.164 4.164 6 C -0.249 4.249 7 S 0.013 5.987 8 C -0.239 4.239 9 C 0.299 3.701 10 O -0.431 6.431 11 N -0.087 5.087 12 C -0.500 4.500 13 H 0.111 0.889 14 C -0.153 4.153 15 N -0.469 5.469 16 Si 0.738 3.262 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.202 1.202 20 C 0.087 3.913 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.192 4.192 24 C -0.139 4.139 25 C -0.211 4.211 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.223 0.777 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.086 0.914 40 H 0.149 0.851 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.795 10.312 -5.767 12.141 hybrid contribution -1.087 -1.230 -1.313 2.102 sum 1.708 9.082 -7.080 11.642 Atomic orbital electron populations 1.21829 0.92651 1.03246 1.02340 1.21220 0.95087 0.90411 0.84488 1.22480 1.01527 0.96624 1.02838 1.86559 1.26663 1.79533 1.43800 1.21982 1.01615 0.93955 0.98849 1.23418 1.03675 0.98191 0.99610 1.87116 1.70138 1.10021 1.31406 1.23230 1.05172 0.93711 1.01739 1.19989 0.82210 0.81778 0.86079 1.90222 1.37169 1.72292 1.43401 1.40852 1.42242 1.09567 1.16039 1.19382 0.95813 1.44394 0.90453 0.88855 1.25626 0.96201 0.96551 0.96918 1.70040 1.18283 1.38347 1.20273 0.86081 0.79667 0.79533 0.80898 1.18756 1.19948 1.20199 1.18249 0.93719 0.91159 0.88132 1.21018 0.99378 0.93915 0.98259 1.20771 0.99239 0.99202 0.95051 1.20802 1.01498 0.97247 0.99614 1.20871 1.00467 0.94952 0.97574 1.22787 1.00524 1.03772 0.93972 0.91012 0.92030 0.91401 0.92244 0.91776 0.91435 0.77725 0.90117 0.90792 0.89826 0.90122 0.88103 0.87200 0.91412 0.85097 0.87743 0.88123 0.87647 0.80843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.49 37.16 0.32 -1.02 16 2 C 0.13 1.20 1.09 -90.61 -0.10 1.10 16 3 C -0.18 -1.31 8.82 37.16 0.33 -0.98 16 4 O -0.56 -5.59 12.31 -35.23 -0.43 -6.02 16 5 C -0.13 -1.31 4.46 -26.73 -0.12 -1.43 16 6 C -0.10 -1.30 5.44 37.16 0.20 -1.10 16 7 S -0.21 -3.72 20.88 -107.50 -2.24 -5.97 16 8 C -0.09 -1.71 5.25 36.01 0.19 -1.53 16 9 C 0.51 12.07 7.59 -10.98 -0.08 11.99 16 10 O -0.55 -13.71 12.27 5.56 0.07 -13.64 16 11 N -0.38 -9.45 2.62 -58.98 -0.15 -9.60 16 12 C -0.37 -8.98 7.61 -14.94 -0.11 -9.09 16 13 H 0.09 2.13 7.85 -52.49 -0.41 1.72 16 14 C 0.06 1.36 3.49 -17.49 -0.06 1.30 16 15 N -0.84 -21.35 11.39 55.49 0.63 -20.72 16 16 Si 0.91 18.20 29.57 -169.99 -5.03 13.17 16 17 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 20 C 0.18 4.64 6.05 -83.69 -0.51 4.13 16 21 C -0.10 -2.51 7.87 -39.37 -0.31 -2.82 16 22 C -0.12 -2.61 10.04 -39.61 -0.40 -3.01 16 23 C -0.17 -3.44 10.04 -39.53 -0.40 -3.84 16 24 C -0.12 -2.52 10.04 -39.61 -0.40 -2.92 16 25 C -0.19 -4.58 9.06 -39.37 -0.36 -4.94 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 28 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.38 2.52 9.05 45.56 0.41 2.93 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.08 7.68 -51.93 -0.40 0.68 16 36 H 0.08 1.04 6.43 -51.92 -0.33 0.70 16 37 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.11 2.16 8.04 -51.92 -0.42 1.74 16 39 H 0.28 6.62 8.32 -40.82 -0.34 6.28 16 40 H 0.13 3.23 5.15 -52.49 -0.27 2.95 16 41 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 42 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 44 H 0.18 4.34 4.50 -56.37 -0.25 4.09 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -28.93 368.44 -9.21 -38.13 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -5.79 Total: 13.25 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.81 Total: -14.16 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.48 Total: -30.32 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.37 Total: -19.66 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -2.24 Total: -5.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.93 -9.21 -38.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566472501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.600 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds