Wall clock time and date at job start Tue Mar 31 2020 14:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46703 * 2 1 4 4 O 1.42900 * 109.47231 * 240.00534 * 2 1 3 5 5 C 1.53001 * 109.46930 * 119.99962 * 2 1 3 6 6 C 1.52998 * 109.46983 * 60.00469 * 5 2 1 7 7 S 1.81397 * 109.46799 * 179.97438 * 6 5 2 8 8 C 1.81401 * 102.99816 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47126 * 180.02562 * 8 7 6 10 10 O 1.21276 * 119.99579 * 354.83761 * 9 8 7 11 11 N 1.34778 * 119.99824 * 174.84329 * 9 8 7 12 12 C 1.37142 * 120.00088 * 5.67568 * 11 9 8 13 13 H 1.07994 * 120.00120 * 55.66883 * 12 11 9 14 14 C 1.38882 * 119.99783 * 235.66404 * 12 11 9 15 15 N 1.31424 * 120.00170 * 9.25079 * 14 12 11 16 16 Si 1.86805 * 120.00198 * 189.24869 * 14 12 11 17 17 H 1.48507 * 109.46835 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47114 * 119.99900 * 16 14 12 19 19 H 1.48497 * 109.47091 * 240.00514 * 16 14 12 20 20 C 1.39790 * 119.99838 * 185.67125 * 11 9 8 21 21 C 1.38959 * 120.07739 * 175.18889 * 20 11 9 22 22 C 1.38080 * 119.91795 * 179.97438 * 21 20 11 23 23 C 1.38308 * 120.08470 * 0.02562 * 22 21 20 24 24 C 1.38311 * 120.15006 * 359.97438 * 23 22 21 25 25 C 1.38079 * 120.08086 * 0.02562 * 24 23 22 26 26 H 1.08995 * 109.47401 * 299.99684 * 1 2 3 27 27 H 1.09007 * 109.47194 * 60.00062 * 1 2 3 28 28 H 1.09001 * 109.46692 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46574 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47472 * 299.99879 * 3 2 1 31 31 H 1.09003 * 109.46815 * 59.99773 * 3 2 1 32 32 H 0.96698 * 113.99753 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.47084 * 299.99922 * 5 2 1 34 34 H 1.08996 * 109.46659 * 180.02562 * 5 2 1 35 35 H 1.08995 * 109.47146 * 59.99769 * 6 5 2 36 36 H 1.09002 * 109.47266 * 299.99927 * 6 5 2 37 37 H 1.08993 * 109.47598 * 60.00134 * 8 7 6 38 38 H 1.09000 * 109.47043 * 299.99869 * 8 7 6 39 39 H 0.96996 * 120.00296 * 184.97981 * 15 14 12 40 40 H 1.07999 * 120.03828 * 359.71039 * 21 20 11 41 41 H 1.08006 * 119.95690 * 179.97438 * 22 21 20 42 42 H 1.07991 * 119.92287 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.95893 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.04142 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 1.5301 -2.1637 1.2492 7 16 2.1353 -3.0190 2.7299 8 6 1.4388 -4.6846 2.5524 9 6 1.8579 -5.5320 3.7261 10 8 2.6325 -5.0895 4.5476 11 7 1.3718 -6.7817 3.8626 12 6 0.5892 -7.3246 2.8759 13 1 0.9576 -7.3772 1.8621 14 6 -0.6770 -7.8070 3.1806 15 7 -1.1984 -7.5819 4.3658 16 14 -1.6393 -8.7757 1.9057 17 1 -0.8363 -8.8906 0.6617 18 1 -1.9319 -10.1328 2.4325 19 1 -2.9141 -8.0741 1.6095 20 6 1.6655 -7.5244 5.0098 21 6 1.0852 -8.7728 5.1988 22 6 1.3781 -9.5039 6.3330 23 6 2.2474 -8.9949 7.2806 24 6 2.8268 -7.7526 7.0958 25 6 2.5386 -7.0160 5.9640 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 2.9704 -0.7120 -1.2327 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7208 1.2495 35 1 1.8934 -2.6775 0.3592 36 1 0.4400 -2.1638 1.2491 37 1 1.8044 -5.1349 1.6297 38 1 0.3511 -4.6219 2.5200 39 1 -2.0506 -7.9791 4.6042 40 1 0.4027 -9.1689 4.4614 41 1 0.9270 -10.4741 6.4806 42 1 2.4743 -9.5687 8.1669 43 1 3.5055 -7.3583 7.8376 44 1 2.9910 -6.0460 5.8205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566472501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:52 Heat of formation + Delta-G solvation = -64.767108 kcal Electronic energy + Delta-G solvation = -24765.523007 eV Core-core repulsion = 21194.947021 eV Total energy + Delta-G solvation = -3570.575986 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51159 -39.50014 -38.96191 -36.89261 -34.29049 -33.87817 -31.94431 -31.45019 -31.32414 -29.47574 -28.27614 -27.08579 -24.85086 -23.56454 -22.92179 -21.39808 -21.09629 -19.63593 -18.10351 -17.49264 -17.45038 -17.26192 -16.85594 -16.55777 -16.27377 -16.07017 -15.69369 -15.17529 -15.12953 -14.80673 -14.59288 -14.22012 -14.11643 -14.01401 -13.61006 -13.41780 -13.23709 -13.13746 -13.06572 -12.96795 -12.86431 -12.73750 -12.50931 -12.46705 -12.14494 -12.09053 -11.77703 -11.57709 -11.10027 -10.89093 -10.75211 -10.59495 -10.04524 -9.55546 -8.76917 -8.63776 -8.17713 -6.51101 0.53488 0.64451 0.79529 1.38302 1.43748 1.55965 1.65307 1.89791 2.21746 2.75014 2.87981 3.32678 3.34130 3.75677 3.87767 3.93564 3.97246 4.16729 4.17886 4.30930 4.33986 4.35437 4.45728 4.58314 4.59651 4.73794 4.81774 4.90216 4.92284 4.97918 5.00665 5.03541 5.13529 5.14482 5.29524 5.32205 5.37365 5.40399 5.77559 5.86266 5.86922 6.00370 6.19999 6.58661 6.89755 6.93307 7.32306 7.71211 8.60310 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.003297 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.680193 B = 8491.709986 C =10014.384002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 C -0.172 4.172 4 O -0.575 6.575 5 C -0.120 4.120 6 C -0.082 4.082 7 S -0.246 6.246 8 C -0.077 4.077 9 C 0.492 3.508 10 O -0.569 6.569 11 N -0.391 5.391 12 C -0.385 4.385 13 H 0.100 0.900 14 C 0.025 3.975 15 N -0.874 5.874 16 Si 0.980 3.020 17 H -0.254 1.254 18 H -0.272 1.272 19 H -0.276 1.276 20 C 0.151 3.849 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.163 4.163 24 C -0.119 4.119 25 C -0.217 4.217 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.389 0.611 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.276 0.724 40 H 0.118 0.882 41 H 0.134 0.866 42 H 0.143 0.857 43 H 0.136 0.864 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 9.578 -7.298 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.092 3.908 3 C -0.230 4.230 4 O -0.384 6.384 5 C -0.159 4.159 6 C -0.230 4.230 7 S -0.019 6.019 8 C -0.227 4.227 9 C 0.284 3.716 10 O -0.454 6.454 11 N -0.100 5.100 12 C -0.512 4.512 13 H 0.117 0.883 14 C -0.182 4.182 15 N -0.507 5.507 16 Si 0.802 3.198 17 H -0.177 1.177 18 H -0.198 1.198 19 H -0.201 1.201 20 C 0.055 3.945 21 C -0.146 4.146 22 C -0.143 4.143 23 C -0.182 4.182 24 C -0.138 4.138 25 C -0.236 4.236 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.238 0.762 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.152 0.848 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.852 10.174 -6.168 12.235 hybrid contribution -1.041 -1.167 -1.140 1.936 sum 1.811 9.007 -7.307 11.739 Atomic orbital electron populations 1.21890 0.92947 1.02563 1.03120 1.21200 0.94913 0.91230 0.83417 1.22430 1.02161 0.95094 1.03323 1.86533 1.28127 1.79770 1.43951 1.22013 1.01990 0.92152 0.99792 1.23484 1.03662 0.99007 0.96893 1.87159 1.70565 1.09214 1.34973 1.23054 1.04655 0.94549 1.00473 1.20655 0.81963 0.81954 0.87063 1.90202 1.38036 1.72752 1.44422 1.41107 1.42470 1.10101 1.16303 1.19679 0.96209 1.44628 0.90689 0.88258 1.26358 0.96593 0.96855 0.98407 1.70151 1.18728 1.39508 1.22273 0.85088 0.78075 0.77927 0.78756 1.17735 1.19761 1.20139 1.18631 0.94894 0.92119 0.88878 1.21064 0.99947 0.94136 0.99454 1.21166 0.98958 1.00065 0.94063 1.21238 0.99799 0.96777 1.00366 1.21242 1.00422 0.95173 0.96938 1.22803 1.01401 1.03981 0.95442 0.89983 0.91598 0.92786 0.91280 0.91449 0.90785 0.76169 0.90037 0.90194 0.89441 0.89948 0.86808 0.87854 0.91421 0.86423 0.84789 0.83882 0.84660 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.49 71.98 0.61 -1.96 16 2 C 0.13 2.25 1.09 -10.79 -0.01 2.23 16 3 C -0.17 -2.17 8.82 71.98 0.63 -1.53 16 4 O -0.58 -10.52 12.31 -148.98 -1.83 -12.35 16 5 C -0.12 -2.35 4.46 30.59 0.14 -2.22 16 6 C -0.08 -2.08 5.44 71.98 0.39 -1.69 16 7 S -0.25 -8.70 20.88 -56.49 -1.18 -9.87 16 8 C -0.08 -3.09 5.25 71.24 0.37 -2.72 16 9 C 0.49 24.30 7.59 87.66 0.66 24.97 16 10 O -0.57 -29.80 12.27 -3.02 -0.04 -29.84 16 11 N -0.39 -20.22 2.62 -458.90 -1.20 -21.42 16 12 C -0.39 -18.96 7.61 84.02 0.64 -18.32 16 13 H 0.10 4.61 7.85 -2.91 -0.02 4.58 16 14 C 0.02 1.19 3.49 84.91 0.30 1.49 16 15 N -0.87 -45.45 11.39 21.65 0.25 -45.20 16 16 Si 0.98 37.31 29.57 68.60 2.03 39.33 16 17 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 18 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 19 H -0.28 -10.42 7.11 99.48 0.71 -9.72 16 20 C 0.15 7.83 6.05 38.22 0.23 8.06 16 21 C -0.13 -6.05 7.87 22.41 0.18 -5.88 16 22 C -0.12 -5.03 10.04 22.25 0.22 -4.81 16 23 C -0.16 -6.07 10.04 22.30 0.22 -5.85 16 24 C -0.12 -4.86 10.04 22.25 0.22 -4.64 16 25 C -0.22 -10.62 9.06 22.41 0.20 -10.42 16 26 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.05 1.08 6.43 -2.39 -0.02 1.06 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.39 4.51 9.05 -74.06 -0.67 3.84 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 2.17 7.68 -2.39 -0.02 2.15 16 36 H 0.08 2.08 6.43 -2.39 -0.02 2.06 16 37 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 38 H 0.10 4.22 8.04 -2.39 -0.02 4.20 16 39 H 0.28 13.50 8.32 -92.71 -0.77 12.73 16 40 H 0.12 5.91 5.15 -2.91 -0.02 5.89 16 41 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.14 4.12 8.06 -2.92 -0.02 4.10 16 43 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 44 H 0.16 8.25 4.50 -64.43 -0.29 7.96 16 Total: -1.00 -63.97 368.44 3.10 -60.87 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: 0.06 Total: 41.75 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: 5.02 Total: -23.27 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.96 Total: -66.63 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.87 Total: -42.19 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.33 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.18 Total: -9.87 kcal Total: -63.97 3.10 -60.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566472501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.899 kcal (2) G-P(sol) polarization free energy of solvation -63.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds