Wall clock time and date at job start Tue Mar 31 2020 14:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42094 * 109.47428 * 2 1 4 4 C 1.76209 * 102.99955 * 250.94650 * 2 1 3 5 5 C 1.38352 * 119.85435 * 89.99711 * 4 2 1 6 6 C 1.37956 * 120.14842 * 179.97438 * 5 4 2 7 7 C 1.39583 * 119.84929 * 0.03252 * 6 5 4 8 8 C 1.47846 * 120.14171 * 179.97438 * 7 6 5 9 9 O 1.21543 * 120.00084 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99806 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47551 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47392 * 300.00334 * 12 11 10 14 14 C 1.53005 * 109.46914 * 60.00464 * 12 11 10 15 15 C 1.52996 * 109.47473 * 180.02562 * 12 11 10 16 16 C 1.50699 * 109.47235 * 180.02562 * 15 12 11 17 17 H 1.07996 * 120.00370 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99790 * 179.97438 * 16 15 12 19 19 N 1.31508 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99910 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46949 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46931 * 119.99831 * 20 18 16 23 23 H 1.48493 * 109.47546 * 240.00072 * 20 18 16 24 24 C 1.39580 * 119.70996 * 0.24334 * 7 6 5 25 25 C 1.37961 * 119.85138 * 359.47415 * 24 7 6 26 26 H 1.09003 * 109.47515 * 169.05548 * 1 2 3 27 27 H 1.09006 * 109.46667 * 289.05581 * 1 2 3 28 28 H 1.09006 * 109.47170 * 49.05170 * 1 2 3 29 29 H 1.08004 * 119.92940 * 359.97438 * 5 4 2 30 30 H 1.07999 * 120.07546 * 180.02562 * 6 5 4 31 31 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 32 32 H 1.09000 * 109.47024 * 300.00478 * 11 10 8 33 33 H 1.09004 * 109.46875 * 60.00324 * 11 10 8 34 34 H 1.09002 * 109.47097 * 59.99758 * 13 12 11 35 35 H 1.09001 * 109.47142 * 179.97438 * 13 12 11 36 36 H 1.08996 * 109.46698 * 299.99777 * 13 12 11 37 37 H 1.08992 * 109.47061 * 59.99825 * 14 12 11 38 38 H 1.08998 * 109.47061 * 180.02562 * 14 12 11 39 39 H 1.09002 * 109.46935 * 299.99850 * 14 12 11 40 40 H 1.09000 * 109.46870 * 300.00218 * 15 12 11 41 41 H 1.08996 * 109.47261 * 59.99829 * 15 12 11 42 42 H 0.97001 * 120.00657 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.06620 * 179.75266 * 24 7 6 44 44 H 1.08001 * 119.92467 * 180.27178 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2103 -0.5605 -1.6229 5 6 2.3652 0.3546 -2.6489 6 6 2.6760 -0.0775 -3.9216 7 6 2.8336 -1.4414 -4.1732 8 6 3.1662 -1.9116 -5.5348 9 8 3.3025 -1.1100 -6.4382 10 7 3.3182 -3.2292 -5.7743 11 6 3.6472 -3.6953 -7.1236 12 6 3.7619 -5.2209 -7.1225 13 6 4.8648 -5.6487 -6.1521 14 6 2.4301 -5.8321 -6.6825 15 6 4.1061 -5.7076 -8.5315 16 6 4.2185 -7.2104 -8.5304 17 1 4.0599 -7.7631 -7.6163 18 6 4.5229 -7.8798 -9.6968 19 7 4.7156 -7.2068 -10.8101 20 14 4.6629 -9.7425 -9.6954 21 1 4.4031 -10.2573 -8.3269 22 1 3.6665 -10.3145 -10.6363 23 1 6.0296 -10.1366 -10.1218 24 6 2.6703 -2.3597 -3.1348 25 6 2.3652 -1.9138 -1.8653 26 1 -0.3634 -1.0090 -0.1951 27 1 -0.3633 0.3355 0.9714 28 1 -0.3634 0.6735 -0.7762 29 1 2.2425 1.4096 -2.4531 30 1 2.7971 0.6379 -4.7216 31 1 3.2090 -3.8689 -5.0534 32 1 2.8612 -3.3909 -7.8149 33 1 4.5958 -3.2595 -7.4373 34 1 4.6200 -5.3020 -5.1481 35 1 4.9462 -6.7357 -6.1510 36 1 5.8135 -5.2133 -6.4656 37 1 1.6445 -5.5274 -7.3737 38 1 2.5119 -6.9190 -6.6812 39 1 2.1853 -5.4854 -5.6785 40 1 3.3207 -5.4028 -9.2231 41 1 5.0550 -5.2721 -8.8447 42 1 4.9300 -7.6776 -11.6306 43 1 2.7870 -3.4166 -3.3238 44 1 2.2430 -2.6230 -1.0601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588177720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:40 Heat of formation + Delta-G solvation = -63.166427 kcal Electronic energy + Delta-G solvation = -24333.243812 eV Core-core repulsion = 20762.737237 eV Total energy + Delta-G solvation = -3570.506575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.32980 -38.59791 -37.09764 -36.15081 -33.84181 -32.32414 -31.50234 -31.25376 -29.23858 -27.21765 -26.58109 -26.47464 -24.23216 -23.09921 -22.56997 -20.48097 -18.94372 -18.41491 -17.49592 -16.65312 -16.42411 -16.00380 -15.33910 -15.20001 -15.11432 -14.97504 -14.50362 -14.13429 -14.08613 -13.78230 -13.75101 -13.35633 -13.15063 -12.91682 -12.81597 -12.68022 -12.22411 -12.18816 -12.10560 -11.53617 -11.22582 -11.07293 -10.87827 -10.72769 -10.70053 -10.47062 -10.29391 -10.00263 -9.94297 -9.60141 -9.36635 -9.24254 -8.96569 -8.88540 -8.78346 -8.39904 -6.03519 -4.05079 0.19369 0.99780 1.38522 2.18856 2.71701 3.23586 3.27537 3.35916 3.37833 3.41668 3.61860 4.39472 4.42055 4.51899 4.66207 4.73613 4.80928 4.96360 5.10616 5.29996 5.31981 5.42510 5.52108 5.55251 5.58892 5.67311 5.77334 5.84678 5.99583 6.08728 6.14675 6.22489 6.31588 6.43098 6.48544 6.56579 6.67017 6.99076 7.01408 7.06029 7.58003 7.60871 7.71324 7.94792 8.24228 8.36512 8.99847 9.58289 11.07918 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.030781 B = 0.002158 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.438274 B =12973.956596 C =13521.971291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.334 4.666 3 O -0.856 6.856 4 C -0.446 4.446 5 C -0.062 4.062 6 C -0.078 4.078 7 C -0.090 4.090 8 C 0.545 3.455 9 O -0.537 6.537 10 N -0.712 5.712 11 C 0.126 3.874 12 C -0.073 4.073 13 C -0.128 4.128 14 C -0.127 4.127 15 C 0.035 3.965 16 C -0.511 4.511 17 H 0.060 0.940 18 C 0.055 3.945 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.106 4.106 25 C -0.051 4.051 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.398 0.602 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.027 0.973 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.260 0.740 43 H 0.134 0.866 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 8.830 24.773 27.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.530 4.470 3 O -0.851 6.851 4 C -0.543 4.543 5 C -0.081 4.081 6 C -0.098 4.098 7 C -0.093 4.093 8 C 0.331 3.669 9 O -0.415 6.415 10 N -0.364 5.364 11 C 0.004 3.996 12 C -0.073 4.073 13 C -0.185 4.185 14 C -0.185 4.185 15 C -0.002 4.002 16 C -0.549 4.549 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.533 5.533 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.125 4.125 25 C -0.070 4.070 26 H 0.131 0.869 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.150 0.850 30 H 0.157 0.843 31 H 0.235 0.765 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.152 0.848 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.750 9.631 24.633 27.297 hybrid contribution -0.827 -0.110 -1.703 1.896 sum -7.578 9.521 22.930 25.959 Atomic orbital electron populations 1.27765 1.22147 1.08170 1.07417 1.69549 0.86125 0.99624 0.91652 1.93121 1.73194 1.37264 1.81539 1.27871 1.10309 0.99707 1.16387 1.21102 0.95207 0.99782 0.91969 1.21399 0.96208 0.94909 0.97267 1.20335 1.00499 0.94643 0.93865 1.18289 0.77909 0.82979 0.87749 1.90783 1.50773 1.54303 1.45617 1.46150 1.70303 1.06529 1.13382 1.21711 1.00836 0.95682 0.81374 1.20917 0.95405 0.90457 1.00523 1.21773 0.98115 1.02657 0.95951 1.21771 0.96519 1.02208 0.97980 1.19098 0.96976 0.96145 0.87985 1.21201 1.47323 0.91625 0.94777 0.92173 1.25026 0.95623 0.98150 0.95769 1.69969 1.48344 1.35304 0.99694 0.86583 0.77620 0.86069 0.77986 1.19789 1.21140 1.21123 1.21486 0.98710 0.99540 0.92805 1.20784 0.95741 0.93616 0.96878 0.86880 0.87526 0.89875 0.85000 0.84329 0.76497 0.91539 0.91505 0.95345 0.91268 0.93260 0.93288 0.91267 0.95364 0.96308 0.96285 0.93057 0.84815 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.21 10.70 101.05 1.08 -1.13 16 2 S 1.33 7.04 14.18 -107.50 -1.52 5.52 16 3 O -0.86 -10.39 16.88 -35.23 -0.59 -10.99 16 4 C -0.45 -3.56 5.62 -39.50 -0.22 -3.78 16 5 C -0.06 -0.67 9.42 -39.64 -0.37 -1.04 16 6 C -0.08 -0.95 9.60 -39.18 -0.38 -1.33 16 7 C -0.09 -1.10 5.87 -104.96 -0.62 -1.72 16 8 C 0.54 8.34 7.77 -12.33 -0.10 8.24 16 9 O -0.54 -10.29 16.35 5.33 0.09 -10.20 16 10 N -0.71 -10.09 4.91 -61.26 -0.30 -10.39 16 11 C 0.13 2.18 4.56 -4.05 -0.02 2.16 16 12 C -0.07 -1.32 0.54 -154.51 -0.08 -1.41 16 13 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 14 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 15 C 0.04 0.85 4.04 -27.89 -0.11 0.74 16 16 C -0.51 -13.25 7.65 -34.44 -0.26 -13.51 16 17 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 18 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 20 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.11 -0.92 9.54 -39.18 -0.37 -1.30 16 25 C -0.05 -0.32 9.73 -39.64 -0.39 -0.71 16 26 H 0.11 0.27 8.14 -51.92 -0.42 -0.16 16 27 H 0.11 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.13 1.48 7.44 -52.48 -0.39 1.09 16 30 H 0.14 1.75 7.65 -52.49 -0.40 1.35 16 31 H 0.40 4.57 4.20 -40.82 -0.17 4.40 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 35 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 39 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.13 0.88 6.41 -52.49 -0.34 0.55 16 44 H 0.14 0.23 8.06 -52.49 -0.42 -0.20 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -37.11 371.05 -8.73 -45.83 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.36 Total: 1.19 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.34 Total: -17.01 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.44 Total: -35.74 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.51 Total: -21.19 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 7.04 SS G_CDS: -1.52 Total: 5.52 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.11 -8.73 -45.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588177720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.333 kcal (2) G-P(sol) polarization free energy of solvation -37.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds