Wall clock time and date at job start Tue Mar 31 2020 14:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42094 * 109.47428 * 2 1 4 4 C 1.76209 * 102.99955 * 250.94650 * 2 1 3 5 5 C 1.38352 * 119.85435 * 89.99711 * 4 2 1 6 6 C 1.37956 * 120.14842 * 179.97438 * 5 4 2 7 7 C 1.39583 * 119.84929 * 0.03252 * 6 5 4 8 8 C 1.47846 * 120.14171 * 179.97438 * 7 6 5 9 9 O 1.21543 * 120.00084 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99806 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47551 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47392 * 300.00334 * 12 11 10 14 14 C 1.53005 * 109.46914 * 60.00464 * 12 11 10 15 15 C 1.52996 * 109.47473 * 180.02562 * 12 11 10 16 16 C 1.50699 * 109.47235 * 180.02562 * 15 12 11 17 17 H 1.07996 * 120.00370 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99790 * 179.97438 * 16 15 12 19 19 N 1.31508 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99910 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46949 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46931 * 119.99831 * 20 18 16 23 23 H 1.48493 * 109.47546 * 240.00072 * 20 18 16 24 24 C 1.39580 * 119.70996 * 0.24334 * 7 6 5 25 25 C 1.37961 * 119.85138 * 359.47415 * 24 7 6 26 26 H 1.09003 * 109.47515 * 169.05548 * 1 2 3 27 27 H 1.09006 * 109.46667 * 289.05581 * 1 2 3 28 28 H 1.09006 * 109.47170 * 49.05170 * 1 2 3 29 29 H 1.08004 * 119.92940 * 359.97438 * 5 4 2 30 30 H 1.07999 * 120.07546 * 180.02562 * 6 5 4 31 31 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 32 32 H 1.09000 * 109.47024 * 300.00478 * 11 10 8 33 33 H 1.09004 * 109.46875 * 60.00324 * 11 10 8 34 34 H 1.09002 * 109.47097 * 59.99758 * 13 12 11 35 35 H 1.09001 * 109.47142 * 179.97438 * 13 12 11 36 36 H 1.08996 * 109.46698 * 299.99777 * 13 12 11 37 37 H 1.08992 * 109.47061 * 59.99825 * 14 12 11 38 38 H 1.08998 * 109.47061 * 180.02562 * 14 12 11 39 39 H 1.09002 * 109.46935 * 299.99850 * 14 12 11 40 40 H 1.09000 * 109.46870 * 300.00218 * 15 12 11 41 41 H 1.08996 * 109.47261 * 59.99829 * 15 12 11 42 42 H 0.97001 * 120.00657 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.06620 * 179.75266 * 24 7 6 44 44 H 1.08001 * 119.92467 * 180.27178 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2103 -0.5605 -1.6229 5 6 2.3652 0.3546 -2.6489 6 6 2.6760 -0.0775 -3.9216 7 6 2.8336 -1.4414 -4.1732 8 6 3.1662 -1.9116 -5.5348 9 8 3.3025 -1.1100 -6.4382 10 7 3.3182 -3.2292 -5.7743 11 6 3.6472 -3.6953 -7.1236 12 6 3.7619 -5.2209 -7.1225 13 6 4.8648 -5.6487 -6.1521 14 6 2.4301 -5.8321 -6.6825 15 6 4.1061 -5.7076 -8.5315 16 6 4.2185 -7.2104 -8.5304 17 1 4.0599 -7.7631 -7.6163 18 6 4.5229 -7.8798 -9.6968 19 7 4.7156 -7.2068 -10.8101 20 14 4.6629 -9.7425 -9.6954 21 1 4.4031 -10.2573 -8.3269 22 1 3.6665 -10.3145 -10.6363 23 1 6.0296 -10.1366 -10.1218 24 6 2.6703 -2.3597 -3.1348 25 6 2.3652 -1.9138 -1.8653 26 1 -0.3634 -1.0090 -0.1951 27 1 -0.3633 0.3355 0.9714 28 1 -0.3634 0.6735 -0.7762 29 1 2.2425 1.4096 -2.4531 30 1 2.7971 0.6379 -4.7216 31 1 3.2090 -3.8689 -5.0534 32 1 2.8612 -3.3909 -7.8149 33 1 4.5958 -3.2595 -7.4373 34 1 4.6200 -5.3020 -5.1481 35 1 4.9462 -6.7357 -6.1510 36 1 5.8135 -5.2133 -6.4656 37 1 1.6445 -5.5274 -7.3737 38 1 2.5119 -6.9190 -6.6812 39 1 2.1853 -5.4854 -5.6785 40 1 3.3207 -5.4028 -9.2231 41 1 5.0550 -5.2721 -8.8447 42 1 4.9300 -7.6776 -11.6306 43 1 2.7870 -3.4166 -3.3238 44 1 2.2430 -2.6230 -1.0601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588177720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:39 Heat of formation + Delta-G solvation = -89.845899 kcal Electronic energy + Delta-G solvation = -24334.400721 eV Core-core repulsion = 20762.737237 eV Total energy + Delta-G solvation = -3571.663484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.42055 -39.60171 -38.54503 -36.90900 -35.38969 -34.09447 -32.39269 -32.03892 -29.61273 -29.10966 -27.94167 -27.80886 -25.51239 -24.36998 -23.61661 -21.66237 -20.14849 -19.23993 -18.58507 -18.35062 -17.48154 -17.05145 -16.53180 -16.48682 -16.03523 -15.86964 -15.77215 -15.21424 -15.19560 -14.76472 -14.64716 -14.46791 -14.21795 -14.00493 -13.93827 -13.89062 -13.59477 -13.32720 -12.88895 -12.79046 -12.67881 -12.58650 -12.33220 -12.27486 -12.19276 -11.94019 -11.54009 -11.51510 -11.24601 -10.93337 -10.82258 -10.51749 -10.46218 -10.11098 -10.07976 -9.39143 -8.13156 -6.21055 -0.58239 0.28062 0.87851 1.43440 1.44505 1.55519 1.56172 1.87396 2.04148 2.45829 2.67191 2.97359 3.21744 3.60636 3.70290 3.91044 3.96007 4.06807 4.21375 4.28143 4.33755 4.38896 4.55357 4.57927 4.68957 4.70135 4.75344 4.92372 4.97445 5.06056 5.09531 5.12953 5.14684 5.22485 5.22624 5.32912 5.44891 5.52250 5.54557 5.57602 5.77514 5.81162 5.90860 6.30176 6.45844 6.94755 7.08999 7.46988 8.99641 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.030781 B = 0.002158 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.438274 B =12973.956596 C =13521.971291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.410 4.590 3 O -0.926 6.926 4 C -0.446 4.446 5 C -0.083 4.083 6 C -0.099 4.099 7 C -0.113 4.113 8 C 0.544 3.456 9 O -0.588 6.588 10 N -0.695 5.695 11 C 0.139 3.861 12 C -0.063 4.063 13 C -0.123 4.123 14 C -0.123 4.123 15 C 0.038 3.962 16 C -0.509 4.509 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.941 5.941 20 Si 0.960 3.040 21 H -0.253 1.253 22 H -0.286 1.286 23 H -0.286 1.286 24 C -0.097 4.097 25 C -0.031 4.031 26 H 0.146 0.854 27 H 0.122 0.878 28 H 0.059 0.941 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.416 0.584 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.059 0.941 39 H 0.074 0.926 40 H -0.016 1.016 41 H -0.016 1.016 42 H 0.259 0.741 43 H 0.166 0.834 44 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.805 5.893 29.570 31.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 1.607 4.393 3 O -0.922 6.922 4 C -0.541 4.541 5 C -0.102 4.102 6 C -0.120 4.120 7 C -0.116 4.116 8 C 0.333 3.667 9 O -0.470 6.470 10 N -0.348 5.348 11 C 0.015 3.985 12 C -0.064 4.064 13 C -0.181 4.181 14 C -0.180 4.180 15 C 0.000 4.000 16 C -0.547 4.547 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.582 5.582 20 Si 0.786 3.214 21 H -0.176 1.176 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.117 4.117 25 C -0.049 4.049 26 H 0.164 0.836 27 H 0.141 0.859 28 H 0.078 0.922 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.256 0.744 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.003 0.997 41 H 0.003 0.997 42 H 0.067 0.933 43 H 0.183 0.817 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.043 6.670 29.471 31.269 hybrid contribution -0.510 0.867 -3.105 3.264 sum -8.553 7.537 26.367 28.725 Atomic orbital electron populations 1.27780 1.20454 1.09795 1.07629 1.68687 0.85820 0.96417 0.88365 1.93000 1.75896 1.41012 1.82329 1.28345 1.08799 1.00414 1.16528 1.21049 0.96879 0.99867 0.92387 1.21272 0.98102 0.95112 0.97473 1.20110 1.03420 0.95089 0.92991 1.18839 0.76610 0.82592 0.88706 1.90756 1.53032 1.55588 1.47628 1.45832 1.69901 1.06681 1.12366 1.21301 0.99224 0.95055 0.82918 1.20711 0.97475 0.90782 0.97425 1.21723 0.96667 1.01980 0.97695 1.21719 0.94627 1.01440 1.00243 1.18995 0.94077 0.95727 0.91201 1.21624 1.45536 0.92469 0.95105 0.90503 1.25994 0.95688 1.03291 0.95557 1.70135 1.50205 1.37378 1.00483 0.85464 0.77188 0.79999 0.78796 1.17606 1.21263 1.21273 1.21913 0.96960 1.00291 0.92511 1.21519 0.92259 0.93589 0.97527 0.83575 0.85909 0.92179 0.86670 0.86804 0.74390 0.93522 0.93562 0.90717 0.92146 0.94624 0.94597 0.92155 0.90706 0.99733 0.99748 0.93266 0.81668 0.77368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.51 10.70 113.37 1.21 -1.30 16 2 S 1.41 10.45 14.18 -56.49 -0.80 9.65 16 3 O -0.93 -21.80 16.88 -148.98 -2.52 -24.32 16 4 C -0.45 -5.76 5.62 22.33 0.13 -5.64 16 5 C -0.08 -1.81 9.42 22.23 0.21 -1.60 16 6 C -0.10 -2.55 9.60 22.53 0.22 -2.34 16 7 C -0.11 -2.64 5.87 -20.09 -0.12 -2.76 16 8 C 0.54 16.73 7.77 86.79 0.67 17.41 16 9 O -0.59 -24.01 16.35 -3.85 -0.06 -24.07 16 10 N -0.70 -18.64 4.91 -466.00 -2.29 -20.93 16 11 C 0.14 4.89 4.56 86.38 0.39 5.29 16 12 C -0.06 -2.28 0.54 -52.18 -0.03 -2.31 16 13 C -0.12 -3.83 8.05 71.98 0.58 -3.25 16 14 C -0.12 -3.80 8.05 71.98 0.58 -3.22 16 15 C 0.04 1.88 4.04 29.85 0.12 2.00 16 16 C -0.51 -26.54 7.65 25.60 0.20 -26.34 16 17 H 0.08 3.69 5.68 -2.91 -0.02 3.67 16 18 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 19 N -0.94 -56.89 13.29 21.45 0.28 -56.60 16 20 Si 0.96 42.70 29.54 68.60 2.03 44.73 16 21 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 24 C -0.10 -1.25 9.54 22.53 0.21 -1.03 16 25 C -0.03 -0.21 9.73 22.23 0.22 0.00 16 26 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.12 2.82 7.44 -2.91 -0.02 2.79 16 30 H 0.11 3.32 7.65 -2.91 -0.02 3.30 16 31 H 0.42 7.76 4.20 -92.71 -0.39 7.37 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.07 1.62 6.86 -2.39 -0.02 1.60 16 35 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.99 6.62 -2.39 -0.02 1.97 16 39 H 0.07 1.60 6.86 -2.39 -0.02 1.59 16 40 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 42 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.17 1.04 6.41 -2.91 -0.02 1.02 16 44 H 0.21 -1.23 8.06 -2.91 -0.02 -1.26 16 Total: -1.00 -89.60 371.05 2.32 -87.28 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.62 Total: 9.37 kcal Atomic # 6 Polarization: -30.17 SS G_CDS: 5.06 Total: -25.12 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -2.00 Total: -77.53 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -2.58 Total: -48.39 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 10.45 SS G_CDS: -0.80 Total: 9.65 kcal Total: -89.60 2.32 -87.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588177720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.561 kcal (2) G-P(sol) polarization free energy of solvation -89.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds