Wall clock time and date at job start Tue Mar 31 2020 14:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42105 * 109.46988 * 2 1 4 4 C 1.76197 * 103.00066 * 250.94469 * 2 1 3 5 5 C 1.38394 * 119.92658 * 89.99757 * 4 2 1 6 6 C 1.38336 * 120.29189 * 179.97438 * 5 4 2 7 7 C 1.37981 * 120.14470 * 0.02562 * 6 5 4 8 8 C 1.39555 * 119.85489 * 0.02562 * 7 6 5 9 9 C 1.47845 * 120.14654 * 180.02562 * 8 7 6 10 10 O 1.21549 * 120.00086 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99788 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99742 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46738 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47438 * 299.99740 * 13 12 11 15 15 C 1.53000 * 109.47077 * 60.00313 * 13 12 11 16 16 C 1.53003 * 109.46661 * 180.02562 * 13 12 11 17 17 C 1.50704 * 109.46991 * 180.02562 * 16 13 12 18 18 H 1.07999 * 119.99604 * 359.97438 * 17 16 13 19 19 C 1.37873 * 119.99983 * 179.97438 * 17 16 13 20 20 N 1.31512 * 120.00365 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99971 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47067 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46977 * 119.99767 * 21 19 17 24 24 H 1.48492 * 109.47370 * 240.00173 * 21 19 17 25 25 C 1.37933 * 119.92995 * 269.72719 * 4 2 1 26 26 H 1.09000 * 109.46905 * 49.05257 * 1 2 3 27 27 H 1.08994 * 109.47180 * 169.05162 * 1 2 3 28 28 H 1.09001 * 109.47115 * 289.05867 * 1 2 3 29 29 H 1.07998 * 119.85232 * 359.97438 * 5 4 2 30 30 H 1.07997 * 119.92543 * 180.02562 * 6 5 4 31 31 H 1.07996 * 120.07124 * 179.97438 * 7 6 5 32 32 H 0.96996 * 119.99959 * 0.02562 * 11 9 8 33 33 H 1.08994 * 109.47061 * 299.99930 * 12 11 9 34 34 H 1.09000 * 109.46922 * 60.00007 * 12 11 9 35 35 H 1.09007 * 109.46758 * 60.00540 * 14 13 12 36 36 H 1.09000 * 109.47314 * 179.97438 * 14 13 12 37 37 H 1.09000 * 109.47457 * 300.00536 * 14 13 12 38 38 H 1.09004 * 109.47015 * 59.99917 * 15 13 12 39 39 H 1.09001 * 109.46824 * 179.97438 * 15 13 12 40 40 H 1.08998 * 109.47059 * 299.99578 * 15 13 12 41 41 H 1.09003 * 109.46936 * 299.99847 * 16 13 12 42 42 H 1.08994 * 109.47436 * 59.99786 * 16 13 12 43 43 H 0.96998 * 120.00271 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.06873 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5605 -1.6227 5 6 2.3657 0.3535 -2.6502 6 6 2.6774 -0.0781 -3.9270 7 6 2.8351 -1.4246 -4.1840 8 6 2.6788 -2.3517 -3.1527 9 6 2.8468 -3.7959 -3.4208 10 8 2.7106 -4.6010 -2.5204 11 7 3.1510 -4.2196 -4.6634 12 6 3.3169 -5.6508 -4.9292 13 6 3.6557 -5.8592 -6.4066 14 6 2.5214 -5.3078 -7.2727 15 6 4.9556 -5.1244 -6.7404 16 6 3.8284 -7.3538 -6.6843 17 6 4.1627 -7.5591 -8.1394 18 1 4.2434 -6.7086 -8.8000 19 6 4.3654 -8.8327 -8.6271 20 7 4.2675 -9.8683 -7.8225 21 14 4.7791 -9.0872 -10.4309 22 1 4.8306 -7.7713 -11.1174 23 1 6.0994 -9.7571 -10.5462 24 1 3.7368 -9.9352 -11.0630 25 6 2.3708 -1.9089 -1.8651 26 1 -0.3633 0.6735 -0.7762 27 1 -0.3633 -1.0089 -0.1952 28 1 -0.3633 0.3356 0.9713 29 1 2.2430 1.4085 -2.4543 30 1 2.7976 0.6403 -4.7243 31 1 3.0780 -1.7603 -5.1813 32 1 3.2601 -3.5771 -5.3818 33 1 4.1247 -6.0437 -4.3119 34 1 2.3907 -6.1741 -4.6918 35 1 2.3980 -4.2430 -7.0750 36 1 2.7629 -5.4559 -8.3253 37 1 1.5953 -5.8312 -7.0350 38 1 5.7637 -5.5173 -6.1233 39 1 5.1971 -5.2733 -7.7928 40 1 4.8322 -4.0597 -6.5426 41 1 4.6363 -7.7470 -6.0673 42 1 2.9022 -7.8769 -6.4466 43 1 4.4098 -10.7643 -8.1658 44 1 2.2540 -2.6208 -1.0613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588177976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:45 Heat of formation + Delta-G solvation = -63.538380 kcal Electronic energy + Delta-G solvation = -24406.489240 eV Core-core repulsion = 20835.966535 eV Total energy + Delta-G solvation = -3570.522705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.31908 -38.59743 -37.08445 -36.09714 -33.82989 -32.32231 -31.42126 -31.36704 -29.16765 -27.20825 -26.57850 -26.44160 -24.12759 -23.26108 -22.54206 -20.57015 -19.13692 -18.02358 -17.38392 -16.44524 -16.41393 -15.97144 -15.73139 -15.31086 -15.09560 -15.00967 -14.50888 -14.18854 -14.01703 -13.77140 -13.73809 -13.22812 -13.13272 -12.88788 -12.81280 -12.43656 -12.17994 -12.11499 -12.05528 -11.85739 -11.22069 -11.07148 -10.87589 -10.69789 -10.68148 -10.46511 -10.29082 -9.97512 -9.93960 -9.66697 -9.34534 -9.23771 -8.96249 -8.81815 -8.76038 -8.39717 -6.03535 -4.04928 0.38020 0.75229 1.46122 2.25934 2.73742 3.25264 3.27576 3.36019 3.38073 3.46057 3.63270 4.41880 4.46745 4.49711 4.65173 4.77959 4.86979 4.87936 5.08561 5.25596 5.32058 5.45076 5.50884 5.55882 5.58085 5.67996 5.80003 5.87259 5.92587 6.09261 6.15048 6.21732 6.32223 6.41642 6.47708 6.56846 6.67773 6.99628 7.01521 7.06409 7.58958 7.61779 7.71573 7.94954 8.26196 8.36881 8.99958 9.58482 11.07891 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.035790 B = 0.002173 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.143002 B =12880.950610 C =13298.404592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.337 4.663 3 O -0.858 6.858 4 C -0.471 4.471 5 C -0.034 4.034 6 C -0.140 4.140 7 C -0.052 4.052 8 C -0.143 4.143 9 C 0.551 3.449 10 O -0.539 6.539 11 N -0.715 5.715 12 C 0.127 3.873 13 C -0.073 4.073 14 C -0.128 4.128 15 C -0.128 4.128 16 C 0.036 3.964 17 C -0.511 4.511 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.013 3.987 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.397 0.603 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 19.030 13.441 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.534 4.466 3 O -0.854 6.854 4 C -0.567 4.567 5 C -0.053 4.053 6 C -0.159 4.159 7 C -0.071 4.071 8 C -0.148 4.148 9 C 0.337 3.663 10 O -0.418 6.418 11 N -0.366 5.366 12 C 0.005 3.995 13 C -0.073 4.073 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.002 4.002 17 C -0.549 4.549 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.007 4.007 26 H 0.100 0.900 27 H 0.132 0.868 28 H 0.125 0.875 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.234 0.766 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.272 18.506 14.790 24.270 hybrid contribution -0.586 1.280 -3.295 3.583 sum -5.858 19.786 11.495 23.621 Atomic orbital electron populations 1.27767 1.22164 1.08235 1.07351 1.69712 0.86070 0.99286 0.91541 1.93092 1.73306 1.37383 1.81578 1.27702 1.13079 0.99251 1.16688 1.21302 0.92176 0.99618 0.92239 1.21211 1.01692 0.95739 0.97293 1.21572 0.93673 0.93178 0.98645 1.20214 1.05849 0.93563 0.95132 1.18176 0.77421 0.87509 0.83159 1.90770 1.51166 1.55536 1.44285 1.46156 1.70318 1.10225 1.09939 1.21696 1.01587 0.78581 0.97639 1.20919 0.94886 1.00835 0.90688 1.21773 0.98041 0.97238 1.01442 1.21774 0.97154 0.96608 1.02980 1.19099 0.97404 0.86660 0.97016 1.21205 1.47244 0.92119 0.94368 0.92222 1.25015 0.95701 0.96327 0.97479 1.69968 1.50013 0.98478 1.34845 0.86594 0.77980 0.78148 0.85595 1.19830 1.21118 1.21124 1.20969 0.89997 0.93570 0.96157 0.89982 0.86785 0.87489 0.85218 0.85042 0.85119 0.76642 0.91462 0.91500 0.95443 0.91321 0.93249 0.93222 0.91320 0.95416 0.96252 0.96268 0.93060 0.83160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.71 10.70 101.05 1.08 -1.63 16 2 S 1.34 8.58 14.18 -107.50 -1.52 7.06 16 3 O -0.86 -10.71 16.89 -35.23 -0.60 -11.31 16 4 C -0.47 -4.19 5.61 -39.64 -0.22 -4.41 16 5 C -0.03 -0.34 9.44 -39.49 -0.37 -0.71 16 6 C -0.14 -1.27 10.03 -39.64 -0.40 -1.66 16 7 C -0.05 -0.50 9.54 -39.18 -0.37 -0.87 16 8 C -0.14 -1.62 5.87 -104.97 -0.62 -2.24 16 9 C 0.55 7.83 7.77 -12.33 -0.10 7.74 16 10 O -0.54 -9.31 16.35 5.32 0.09 -9.22 16 11 N -0.72 -9.88 4.91 -61.25 -0.30 -10.18 16 12 C 0.13 2.14 4.56 -4.04 -0.02 2.12 16 13 C -0.07 -1.32 0.54 -154.51 -0.08 -1.41 16 14 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 15 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 16 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 17 C -0.51 -13.25 7.65 -34.44 -0.26 -13.51 16 18 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 21 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.01 0.12 9.30 -39.18 -0.36 -0.24 16 26 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.11 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.13 1.30 7.44 -52.49 -0.39 0.91 16 30 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.13 1.02 6.40 -52.49 -0.34 0.69 16 32 H 0.40 4.62 4.20 -40.82 -0.17 4.44 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 36 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 40 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.15 1.13 7.65 -52.48 -0.40 0.73 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -35.65 371.06 -8.72 -44.38 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.36 Total: 1.40 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -1.34 Total: -18.35 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.44 Total: -35.40 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.51 Total: -20.53 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 8.58 SS G_CDS: -1.52 Total: 7.06 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.65 -8.72 -44.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588177976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.162 kcal (2) G-P(sol) polarization free energy of solvation -35.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds