Wall clock time and date at job start Tue Mar 31 2020 14:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42105 * 109.46988 * 2 1 4 4 C 1.76197 * 103.00066 * 250.94469 * 2 1 3 5 5 C 1.38394 * 119.92658 * 89.99757 * 4 2 1 6 6 C 1.38336 * 120.29189 * 179.97438 * 5 4 2 7 7 C 1.37981 * 120.14470 * 0.02562 * 6 5 4 8 8 C 1.39555 * 119.85489 * 0.02562 * 7 6 5 9 9 C 1.47845 * 120.14654 * 180.02562 * 8 7 6 10 10 O 1.21549 * 120.00086 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99788 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99742 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46738 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47438 * 299.99740 * 13 12 11 15 15 C 1.53000 * 109.47077 * 60.00313 * 13 12 11 16 16 C 1.53003 * 109.46661 * 180.02562 * 13 12 11 17 17 C 1.50704 * 109.46991 * 180.02562 * 16 13 12 18 18 H 1.07999 * 119.99604 * 359.97438 * 17 16 13 19 19 C 1.37873 * 119.99983 * 179.97438 * 17 16 13 20 20 N 1.31512 * 120.00365 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99971 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47067 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46977 * 119.99767 * 21 19 17 24 24 H 1.48492 * 109.47370 * 240.00173 * 21 19 17 25 25 C 1.37933 * 119.92995 * 269.72719 * 4 2 1 26 26 H 1.09000 * 109.46905 * 49.05257 * 1 2 3 27 27 H 1.08994 * 109.47180 * 169.05162 * 1 2 3 28 28 H 1.09001 * 109.47115 * 289.05867 * 1 2 3 29 29 H 1.07998 * 119.85232 * 359.97438 * 5 4 2 30 30 H 1.07997 * 119.92543 * 180.02562 * 6 5 4 31 31 H 1.07996 * 120.07124 * 179.97438 * 7 6 5 32 32 H 0.96996 * 119.99959 * 0.02562 * 11 9 8 33 33 H 1.08994 * 109.47061 * 299.99930 * 12 11 9 34 34 H 1.09000 * 109.46922 * 60.00007 * 12 11 9 35 35 H 1.09007 * 109.46758 * 60.00540 * 14 13 12 36 36 H 1.09000 * 109.47314 * 179.97438 * 14 13 12 37 37 H 1.09000 * 109.47457 * 300.00536 * 14 13 12 38 38 H 1.09004 * 109.47015 * 59.99917 * 15 13 12 39 39 H 1.09001 * 109.46824 * 179.97438 * 15 13 12 40 40 H 1.08998 * 109.47059 * 299.99578 * 15 13 12 41 41 H 1.09003 * 109.46936 * 299.99847 * 16 13 12 42 42 H 1.08994 * 109.47436 * 59.99786 * 16 13 12 43 43 H 0.96998 * 120.00271 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.06873 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5605 -1.6227 5 6 2.3657 0.3535 -2.6502 6 6 2.6774 -0.0781 -3.9270 7 6 2.8351 -1.4246 -4.1840 8 6 2.6788 -2.3517 -3.1527 9 6 2.8468 -3.7959 -3.4208 10 8 2.7106 -4.6010 -2.5204 11 7 3.1510 -4.2196 -4.6634 12 6 3.3169 -5.6508 -4.9292 13 6 3.6557 -5.8592 -6.4066 14 6 2.5214 -5.3078 -7.2727 15 6 4.9556 -5.1244 -6.7404 16 6 3.8284 -7.3538 -6.6843 17 6 4.1627 -7.5591 -8.1394 18 1 4.2434 -6.7086 -8.8000 19 6 4.3654 -8.8327 -8.6271 20 7 4.2675 -9.8683 -7.8225 21 14 4.7791 -9.0872 -10.4309 22 1 4.8306 -7.7713 -11.1174 23 1 6.0994 -9.7571 -10.5462 24 1 3.7368 -9.9352 -11.0630 25 6 2.3708 -1.9089 -1.8651 26 1 -0.3633 0.6735 -0.7762 27 1 -0.3633 -1.0089 -0.1952 28 1 -0.3633 0.3356 0.9713 29 1 2.2430 1.4085 -2.4543 30 1 2.7976 0.6403 -4.7243 31 1 3.0780 -1.7603 -5.1813 32 1 3.2601 -3.5771 -5.3818 33 1 4.1247 -6.0437 -4.3119 34 1 2.3907 -6.1741 -4.6918 35 1 2.3980 -4.2430 -7.0750 36 1 2.7629 -5.4559 -8.3253 37 1 1.5953 -5.8312 -7.0350 38 1 5.7637 -5.5173 -6.1233 39 1 5.1971 -5.2733 -7.7928 40 1 4.8322 -4.0597 -6.5426 41 1 4.6363 -7.7470 -6.0673 42 1 2.9022 -7.8769 -6.4466 43 1 4.4098 -10.7643 -8.1658 44 1 2.2540 -2.6208 -1.0613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588177976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:45 Heat of formation + Delta-G solvation = -87.587016 kcal Electronic energy + Delta-G solvation = -24407.532067 eV Core-core repulsion = 20835.966535 eV Total energy + Delta-G solvation = -3571.565532 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34021 -39.59111 -38.48547 -36.89326 -35.32591 -34.06286 -32.30729 -32.14891 -29.63557 -29.09510 -27.95938 -27.75455 -25.42361 -24.36487 -23.69058 -21.64105 -20.26060 -19.23651 -18.36910 -18.10505 -17.42244 -16.94222 -16.53395 -16.48489 -16.43914 -15.89918 -15.79448 -15.15785 -15.15070 -14.83717 -14.66549 -14.50185 -14.29411 -13.96137 -13.93507 -13.66763 -13.46919 -13.14048 -12.88919 -12.77120 -12.69197 -12.59104 -12.57898 -12.33708 -12.22182 -11.94614 -11.53345 -11.44092 -11.21132 -10.90541 -10.79406 -10.50879 -10.41503 -10.20851 -9.96050 -9.37635 -8.13035 -6.20299 -0.38436 0.03029 0.87489 1.42144 1.43717 1.54736 1.62543 1.87095 2.13742 2.45470 2.67954 2.94414 3.21749 3.57905 3.80791 3.93880 3.99351 4.09641 4.11635 4.23133 4.29840 4.36648 4.49448 4.54389 4.69602 4.73278 4.80782 4.83227 4.96204 5.06552 5.11334 5.13073 5.15567 5.17038 5.20165 5.36761 5.46437 5.51956 5.54372 5.58490 5.71752 5.81720 5.91603 6.31596 6.52179 6.95197 7.16812 7.47379 8.99547 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.035790 B = 0.002173 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.143002 B =12880.950610 C =13298.404592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.497 4.497 2 S 1.392 4.608 3 O -0.917 6.917 4 C -0.475 4.475 5 C -0.048 4.048 6 C -0.140 4.140 7 C -0.049 4.049 8 C -0.161 4.161 9 C 0.553 3.447 10 O -0.575 6.575 11 N -0.705 5.705 12 C 0.141 3.859 13 C -0.064 4.064 14 C -0.123 4.123 15 C -0.124 4.124 16 C 0.039 3.961 17 C -0.511 4.511 18 H 0.072 0.928 19 C -0.006 4.006 20 N -0.938 5.938 21 Si 0.957 3.043 22 H -0.257 1.257 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.013 3.987 26 H 0.067 0.933 27 H 0.134 0.866 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.411 0.589 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.055 0.945 40 H 0.068 0.932 41 H -0.012 1.012 42 H -0.012 1.012 43 H 0.259 0.741 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 21.346 12.657 25.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.590 4.410 3 O -0.913 6.913 4 C -0.570 4.570 5 C -0.067 4.067 6 C -0.158 4.158 7 C -0.068 4.068 8 C -0.165 4.165 9 C 0.341 3.659 10 O -0.456 6.456 11 N -0.358 5.358 12 C 0.017 3.983 13 C -0.065 4.065 14 C -0.180 4.180 15 C -0.181 4.181 16 C 0.001 3.999 17 C -0.549 4.549 18 H 0.090 0.910 19 C -0.202 4.202 20 N -0.579 5.579 21 Si 0.782 3.218 22 H -0.181 1.181 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.007 4.007 26 H 0.087 0.913 27 H 0.153 0.847 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.173 0.827 31 H 0.169 0.831 32 H 0.250 0.750 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.006 0.994 42 H 0.006 0.994 43 H 0.068 0.932 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.685 20.868 13.974 25.751 hybrid contribution -0.531 0.582 -2.964 3.067 sum -6.216 21.450 11.010 24.899 Atomic orbital electron populations 1.27748 1.20506 1.09304 1.07911 1.69088 0.86104 0.96509 0.89317 1.92979 1.75601 1.40387 1.82366 1.27896 1.12771 0.98874 1.17494 1.21493 0.92471 0.99650 0.93121 1.21466 1.00807 0.96005 0.97567 1.21773 0.92904 0.93032 0.99096 1.20070 1.08114 0.91794 0.96550 1.18590 0.76220 0.88584 0.82458 1.90753 1.52744 1.56841 1.45301 1.45913 1.70357 1.08882 1.10607 1.21277 1.00219 0.80468 0.96321 1.20708 0.96728 0.97108 0.91948 1.21713 0.96626 0.99640 1.00070 1.21716 0.95655 0.98857 1.01858 1.18984 0.94546 0.90569 0.95783 1.21617 1.45594 0.92344 0.95351 0.90969 1.25929 0.96016 0.96334 1.01966 1.70118 1.51837 0.98927 1.37009 0.85517 0.77362 0.78557 0.80315 1.18100 1.21165 1.21136 1.21175 0.89282 0.94083 0.96174 0.91338 0.84739 0.85823 0.85746 0.82680 0.83070 0.75039 0.93066 0.93035 0.91295 0.92559 0.94252 0.94277 0.92550 0.91290 0.99401 0.99372 0.93206 0.81577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.28 10.70 113.37 1.21 -3.07 16 2 S 1.39 15.90 14.18 -56.49 -0.80 15.10 16 3 O -0.92 -22.37 16.89 -148.98 -2.52 -24.88 16 4 C -0.47 -7.64 5.61 22.23 0.12 -7.51 16 5 C -0.05 -0.86 9.44 22.33 0.21 -0.65 16 6 C -0.14 -2.13 10.03 22.23 0.22 -1.91 16 7 C -0.05 -0.80 9.54 22.53 0.21 -0.58 16 8 C -0.16 -3.31 5.87 -20.09 -0.12 -3.43 16 9 C 0.55 14.96 7.77 86.79 0.67 15.63 16 10 O -0.58 -19.68 16.35 -3.87 -0.06 -19.75 16 11 N -0.71 -18.16 4.91 -465.97 -2.29 -20.45 16 12 C 0.14 4.73 4.56 86.38 0.39 5.12 16 13 C -0.06 -2.31 0.54 -52.18 -0.03 -2.34 16 14 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 15 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 16 C 0.04 1.91 4.04 29.85 0.12 2.03 16 17 C -0.51 -26.71 7.65 25.60 0.20 -26.51 16 18 H 0.07 3.53 5.68 -2.91 -0.02 3.52 16 19 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 20 N -0.94 -56.13 13.29 21.45 0.28 -55.85 16 21 Si 0.96 42.93 29.54 68.60 2.03 44.96 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 25 C 0.01 0.22 9.30 22.53 0.21 0.43 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.12 2.37 7.44 -2.91 -0.02 2.35 16 30 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 31 H 0.15 1.72 6.40 -2.91 -0.02 1.70 16 32 H 0.41 8.10 4.20 -92.71 -0.39 7.71 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 1.60 6.86 -2.38 -0.02 1.59 16 36 H 0.06 1.93 6.62 -2.39 -0.02 1.92 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.06 1.94 6.62 -2.39 -0.02 1.93 16 40 H 0.07 1.62 6.86 -2.39 -0.02 1.60 16 41 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 42 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.17 2.21 7.65 -2.91 -0.02 2.19 16 Total: -1.00 -79.55 371.06 2.32 -77.23 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.62 Total: 12.96 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 5.06 Total: -29.33 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -2.00 Total: -76.29 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -2.58 Total: -44.63 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 15.90 SS G_CDS: -0.80 Total: 15.10 kcal Total: -79.55 2.32 -77.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588177976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.355 kcal (2) G-P(sol) polarization free energy of solvation -79.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds