Wall clock time and date at job start Tue Mar 31 2020 14:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99982 * 2 1 4 4 C 1.53001 * 109.46833 * 125.00271 * 3 2 1 5 5 C 1.52996 * 109.47351 * 60.00192 * 4 3 2 6 6 C 1.52997 * 109.47214 * 299.99789 * 4 3 2 7 7 C 1.53009 * 109.46848 * 179.97438 * 4 3 2 8 8 N 1.46505 * 109.46667 * 179.97438 * 7 4 3 9 9 S 1.65598 * 119.99364 * 164.99946 * 8 7 4 10 10 O 1.42098 * 106.40579 * 311.46117 * 9 8 7 11 11 O 1.42104 * 106.40061 * 178.54303 * 9 8 7 12 12 C 1.76195 * 107.21796 * 65.00334 * 9 8 7 13 13 C 1.38662 * 119.87952 * 270.24723 * 12 9 8 14 14 C 1.38613 * 120.50337 * 180.30428 * 13 12 9 15 15 C 1.37635 * 120.24644 * 359.44170 * 14 13 12 16 16 C 1.40700 * 119.74734 * 0.27966 * 15 14 13 17 17 C 1.41393 * 120.24808 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00329 * 204.39358 * 17 16 15 19 19 C 1.39942 * 119.99793 * 24.38823 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.86190 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.85679 * 19 17 16 22 22 H 1.48504 * 109.46865 * 90.00477 * 21 19 17 23 23 H 1.48493 * 109.47164 * 210.00257 * 21 19 17 24 24 H 1.48499 * 109.47067 * 330.00626 * 21 19 17 25 25 C 1.37597 * 119.87685 * 90.00071 * 12 9 8 26 26 H 1.07997 * 120.00742 * 179.97438 * 1 2 3 27 27 H 1.08009 * 119.99771 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.99786 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47242 * 5.00173 * 3 2 1 30 30 H 1.09001 * 109.47105 * 244.99720 * 3 2 1 31 31 H 1.08993 * 109.47453 * 180.02562 * 5 4 3 32 32 H 1.09008 * 109.46756 * 300.00032 * 5 4 3 33 33 H 1.08995 * 109.47594 * 59.99498 * 5 4 3 34 34 H 1.09003 * 109.47209 * 299.99990 * 6 4 3 35 35 H 1.08994 * 109.47056 * 59.99964 * 6 4 3 36 36 H 1.08999 * 109.47150 * 180.02562 * 6 4 3 37 37 H 1.08994 * 109.47041 * 60.00016 * 7 4 3 38 38 H 1.08995 * 109.46964 * 299.99808 * 7 4 3 39 39 H 0.97000 * 120.00105 * 345.00850 * 8 7 4 40 40 H 1.07998 * 119.74547 * 0.04857 * 13 12 9 41 41 H 1.07991 * 119.87429 * 179.72331 * 14 13 12 42 42 H 1.07998 * 120.12988 * 180.25464 * 15 14 13 43 43 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.12756 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 4.0246 0.1728 1.0558 6 6 2.2522 1.1961 2.4890 7 6 3.8006 2.6578 1.1812 8 7 4.7304 2.6847 2.3131 9 16 5.9435 3.8109 2.3612 10 8 6.5768 3.7732 1.0897 11 8 6.6389 3.5996 3.5823 12 6 5.1807 5.3939 2.4904 13 6 4.8471 6.0958 1.3421 14 6 4.2523 7.3448 1.4287 15 6 3.9759 7.8972 2.6586 16 6 4.3047 7.1917 3.8307 17 6 4.0260 7.7495 5.0997 18 1 4.5960 7.4394 5.9629 19 6 3.0114 8.7035 5.2371 20 7 2.1013 8.8293 4.3057 21 14 2.9564 9.7973 6.7504 22 1 3.7417 11.0321 6.4975 23 1 1.5475 10.1592 7.0487 24 1 3.5365 9.0702 7.9080 25 6 4.9137 5.9269 3.7306 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 4.7164 0.1924 1.8978 32 1 3.4795 -0.7712 1.0558 33 1 4.5823 0.2703 0.1245 34 1 1.5473 2.0227 2.5786 35 1 1.7072 0.2522 2.4889 36 1 2.9443 1.2164 3.3308 37 1 3.0960 3.4845 1.2706 38 1 4.3583 2.7548 0.2499 39 1 4.6356 2.0428 3.0341 40 1 5.0560 5.6677 0.3728 41 1 4.0008 7.8845 0.5278 42 1 3.5087 8.8688 2.7239 43 1 1.3978 9.4904 4.4011 44 1 5.1704 5.3766 4.6238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590087970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:43 Heat of formation + Delta-G solvation = -58.229240 kcal Electronic energy + Delta-G solvation = -25388.220453 eV Core-core repulsion = 21817.927970 eV Total energy + Delta-G solvation = -3570.292483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.73067 -37.63683 -36.62061 -35.27933 -34.60724 -33.85075 -31.94903 -30.08013 -29.78673 -27.35288 -27.06026 -25.55685 -25.40269 -21.88877 -21.00050 -20.30513 -19.16048 -18.75971 -17.97778 -17.01573 -16.01713 -15.90930 -15.38106 -15.20392 -14.93606 -14.63155 -14.53627 -13.98380 -13.70510 -13.44655 -13.33713 -13.20540 -12.65074 -12.57886 -12.01773 -11.88917 -11.77736 -11.67650 -11.59418 -11.49300 -11.42445 -11.39176 -11.37906 -11.04987 -10.99892 -10.89118 -10.79372 -10.61077 -10.44836 -9.78070 -9.64772 -9.42431 -9.36357 -9.09756 -8.03966 -7.71043 -6.93650 -4.54267 1.06132 2.14683 2.20102 2.62752 2.99404 3.03570 3.06363 3.61638 3.82289 4.25619 4.43297 4.51071 4.69300 4.78611 4.97869 5.07092 5.10223 5.31698 5.40177 5.48906 5.57828 5.67433 5.69012 5.74749 5.78213 5.90545 5.92413 6.03892 6.04555 6.15254 6.17719 6.26774 6.29937 6.50820 6.64313 6.65370 6.75952 6.84999 7.02718 7.20373 7.26575 7.38509 7.72487 7.80708 7.94008 8.39962 8.66408 8.71419 10.01766 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.003654 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.331376 B = 7660.601097 C = 8629.108825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.087 4.087 4 C -0.064 4.064 5 C -0.144 4.144 6 C -0.143 4.143 7 C 0.128 3.872 8 N -1.119 6.119 9 S 2.690 3.310 10 O -0.976 6.976 11 O -0.975 6.975 12 C -0.631 4.631 13 C -0.149 4.149 14 C -0.121 4.121 15 C -0.119 4.119 16 C 0.092 3.908 17 C -0.461 4.461 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.260 1.260 25 C -0.123 4.123 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.412 0.588 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.283 0.717 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.560 -12.442 -5.914 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.162 4.162 3 C -0.125 4.125 4 C -0.066 4.066 5 C -0.201 4.201 6 C -0.200 4.200 7 C 0.002 3.998 8 N -0.878 5.878 9 S 2.785 3.215 10 O -0.966 6.966 11 O -0.965 6.965 12 C -0.723 4.723 13 C -0.170 4.170 14 C -0.140 4.140 15 C -0.139 4.139 16 C 0.088 3.912 17 C -0.490 4.490 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.736 3.264 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.145 4.145 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.247 0.753 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.851 -12.395 -6.154 14.129 hybrid contribution -0.906 0.827 1.021 1.596 sum -3.757 -11.567 -5.132 13.200 Atomic orbital electron populations 1.23842 0.96013 1.01698 1.02142 1.22916 0.95828 0.98469 0.98940 1.20816 0.97904 0.95768 0.97972 1.20674 0.95098 0.94923 0.95887 1.21925 0.98619 0.97228 1.02353 1.21895 0.99976 1.02089 0.96063 1.21318 0.92188 0.97627 0.88684 1.55566 1.50343 1.49914 1.31953 1.01609 0.72994 0.73849 0.73006 1.93506 1.73027 1.87138 1.42932 1.93535 1.70834 1.85993 1.46141 1.29748 1.20672 1.21519 1.00342 1.20080 1.04866 0.97253 0.94837 1.20805 1.00369 0.95745 0.97097 1.21634 1.00879 1.00002 0.91350 1.17684 0.89900 0.89937 0.93674 1.19633 1.15206 1.19231 0.94935 0.89904 1.25930 0.93879 0.96373 0.98081 1.69785 1.09484 1.29033 1.33632 0.86245 0.78235 0.80435 0.81502 1.19147 1.20215 1.18421 1.20779 1.03519 0.96455 0.93723 0.88843 0.88592 0.87408 0.90887 0.90527 0.92342 0.92462 0.92286 0.92097 0.92357 0.92472 0.91169 0.90364 0.75292 0.87638 0.88424 0.85773 0.90602 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.64 14.32 29.01 0.42 -1.23 16 2 C -0.14 -1.21 7.65 -36.03 -0.28 -1.49 16 3 C -0.09 -0.80 4.73 -27.88 -0.13 -0.93 16 4 C -0.06 -0.65 0.56 -154.51 -0.09 -0.74 16 5 C -0.14 -1.36 8.05 37.16 0.30 -1.06 16 6 C -0.14 -1.46 8.06 37.16 0.30 -1.16 16 7 C 0.13 1.63 5.11 -4.03 -0.02 1.61 16 8 N -1.12 -15.94 5.33 -10.61 -0.06 -15.99 16 9 S 2.69 49.95 5.73 -107.50 -0.62 49.34 16 10 O -0.98 -19.66 16.75 -57.17 -0.96 -20.62 16 11 O -0.97 -20.42 17.27 -57.17 -0.99 -21.41 16 12 C -0.63 -13.64 5.94 -39.66 -0.24 -13.87 16 13 C -0.15 -3.19 9.53 -39.29 -0.37 -3.57 16 14 C -0.12 -2.68 10.02 -39.66 -0.40 -3.08 16 15 C -0.12 -2.94 8.70 -38.87 -0.34 -3.28 16 16 C 0.09 2.35 5.58 -106.82 -0.60 1.76 16 17 C -0.46 -11.79 9.05 -37.74 -0.34 -12.13 16 18 H 0.08 2.05 7.91 -52.49 -0.42 1.63 16 19 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 20 N -0.79 -19.47 10.95 55.55 0.61 -18.86 16 21 Si 0.91 18.00 29.60 -169.99 -5.03 12.97 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 24 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 25 C -0.12 -2.95 9.26 -38.87 -0.36 -3.31 16 26 H 0.09 0.67 8.06 -52.49 -0.42 0.24 16 27 H 0.10 0.79 7.84 -52.48 -0.41 0.38 16 28 H 0.11 0.83 6.81 -52.49 -0.36 0.47 16 29 H 0.07 0.69 7.79 -51.93 -0.40 0.28 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.57 7.20 -51.93 -0.37 0.19 16 32 H 0.06 0.46 6.53 -51.92 -0.34 0.12 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.54 7.22 -51.93 -0.37 0.16 16 36 H 0.06 0.58 6.60 -51.93 -0.34 0.24 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 39 H 0.41 5.06 6.47 -34.47 -0.22 4.84 16 40 H 0.11 2.02 7.61 -52.49 -0.40 1.63 16 41 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 43 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 44 H 0.11 2.56 7.60 -52.48 -0.40 2.16 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -29.78 369.09 -10.15 -39.93 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.44 Total: 9.83 kcal Atomic # 6 Polarization: -38.52 SS G_CDS: -2.23 Total: -40.76 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.55 Total: -34.85 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -1.94 Total: -42.02 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 49.95 SS G_CDS: -0.62 Total: 49.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.78 -10.15 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590087970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.300 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds