Wall clock time and date at job start Tue Mar 31 2020 13:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47279 * 2 1 4 4 C 1.52994 * 113.01533 * 294.47213 * 3 2 1 5 5 C 1.53002 * 109.46982 * 308.97933 * 4 3 2 6 6 C 1.53945 * 113.74289 * 162.80764 * 3 2 1 7 7 N 1.47583 * 86.11630 * 269.25970 * 6 3 2 8 8 S 1.65600 * 134.49132 * 155.36002 * 7 6 3 9 9 O 1.42106 * 106.40065 * 23.53817 * 8 7 6 10 10 O 1.42092 * 106.40208 * 156.46006 * 8 7 6 11 11 C 1.76205 * 107.21846 * 270.00167 * 8 7 6 12 12 C 1.38656 * 119.87578 * 89.99813 * 11 8 7 13 13 C 1.38619 * 120.49750 * 179.97438 * 12 11 8 14 14 C 1.37635 * 120.24961 * 359.97438 * 13 12 11 15 15 C 1.40698 * 119.74699 * 0.02562 * 14 13 12 16 16 C 1.41396 * 120.24521 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99682 * 151.00715 * 16 15 14 18 18 C 1.39945 * 119.99874 * 331.00213 * 16 15 14 19 19 N 1.30822 * 119.99467 * 164.04098 * 18 16 15 20 20 Si 1.86799 * 120.00144 * 344.04657 * 18 16 15 21 21 H 1.48491 * 109.47376 * 93.24056 * 20 18 16 22 22 H 1.48498 * 109.46696 * 213.24206 * 20 18 16 23 23 H 1.48499 * 109.47075 * 333.23548 * 20 18 16 24 24 C 1.37595 * 119.87269 * 269.72518 * 11 8 7 25 25 C 1.47576 * 91.01676 * 335.36087 * 7 6 3 26 26 H 1.09000 * 109.47223 * 182.67659 * 1 2 3 27 27 H 1.09008 * 109.47361 * 302.67251 * 1 2 3 28 28 H 1.09002 * 109.47181 * 62.66624 * 1 2 3 29 29 H 1.08999 * 109.47372 * 239.99766 * 2 1 3 30 30 H 1.09003 * 109.46995 * 119.99878 * 2 1 3 31 31 H 1.09006 * 109.47446 * 68.97431 * 4 3 2 32 32 H 1.08998 * 109.47203 * 188.97821 * 4 3 2 33 33 H 1.09000 * 109.47560 * 67.24837 * 5 4 3 34 34 H 1.09003 * 109.47092 * 187.24680 * 5 4 3 35 35 H 1.09004 * 109.47300 * 307.24250 * 5 4 3 36 36 H 1.08998 * 113.76658 * 23.56248 * 6 3 2 37 37 H 1.09001 * 113.76781 * 154.96138 * 6 3 2 38 38 H 1.07996 * 119.75113 * 359.95527 * 12 11 8 39 39 H 1.08000 * 119.86831 * 180.02562 * 13 12 11 40 40 H 1.08003 * 120.12726 * 180.02562 * 14 13 12 41 41 H 0.97006 * 119.99968 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.12705 * 359.97438 * 24 11 8 43 43 H 1.09004 * 113.76937 * 270.33926 * 25 7 6 44 44 H 1.08999 * 113.77259 * 138.94291 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6895 2.2010 -1.2817 5 6 2.1179 1.3751 -2.4963 6 6 3.5158 1.5782 0.4165 7 7 3.0086 1.7333 1.7937 8 16 3.6430 1.4702 3.3006 9 8 5.0553 1.5388 3.1590 10 8 2.9105 2.2971 4.1943 11 6 3.2674 -0.1939 3.7414 12 6 4.1519 -1.2110 3.4161 13 6 3.8696 -2.5246 3.7571 14 6 2.7059 -2.8331 4.4241 15 6 1.8010 -1.8092 4.7593 16 6 0.6025 -2.1141 5.4449 17 1 0.1523 -1.3808 6.0975 18 6 -0.0001 -3.3660 5.2777 19 7 -0.9117 -3.7713 6.1240 20 14 0.4973 -4.4584 3.8464 21 1 1.5712 -5.3868 4.2821 22 1 -0.6788 -5.2414 3.3895 23 1 0.9947 -3.6153 2.7298 24 6 2.1002 -0.4785 4.4121 25 6 1.7091 2.2170 1.2887 26 1 -0.3634 -1.0265 0.0480 27 1 -0.3634 0.5548 0.8651 28 1 -0.3634 0.4719 -0.9129 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.6136 2.3721 -1.3199 32 1 2.2103 3.1584 -1.2913 33 1 1.5055 0.4755 -2.5584 34 1 1.9873 1.9668 -3.4024 35 1 3.1662 1.0947 -2.3936 36 1 4.1007 0.6712 0.2632 37 1 4.0027 2.4712 0.0245 38 1 5.0675 -0.9781 2.8929 39 1 4.5660 -3.3088 3.4991 40 1 2.4881 -3.8572 4.6892 41 1 -1.3292 -4.6392 6.0084 42 1 1.4150 0.3159 4.6687 43 1 1.6652 3.2976 1.1528 44 1 0.8514 1.8201 1.8318 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590162331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:41 Heat of formation + Delta-G solvation = -36.801178 kcal Electronic energy + Delta-G solvation = -26370.354088 eV Core-core repulsion = 22800.990795 eV Total energy + Delta-G solvation = -3569.363293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.11868 -37.94651 -36.72191 -35.37920 -34.13384 -33.80843 -31.35629 -30.75311 -30.18770 -27.47895 -26.34092 -25.39774 -23.39334 -23.13612 -22.33644 -20.92682 -18.81111 -18.18727 -17.94687 -17.02624 -16.39377 -15.96246 -15.63295 -15.21636 -15.10635 -14.80475 -14.33696 -13.85432 -13.63237 -13.37790 -13.15697 -12.97220 -12.90598 -12.56863 -12.30919 -12.24463 -11.98732 -11.89280 -11.81405 -11.75447 -11.63985 -11.49056 -11.41083 -11.08183 -10.98350 -10.84820 -10.61280 -10.31895 -10.24034 -10.17204 -9.99754 -9.76858 -9.36236 -8.86169 -8.28429 -7.91094 -7.10677 -4.66962 0.82335 1.89394 2.39577 2.95415 3.07262 3.14001 3.33553 3.80572 4.14470 4.21383 4.27152 4.60871 4.65020 4.71311 4.91875 5.13820 5.19188 5.32005 5.41546 5.45642 5.48490 5.58197 5.63223 5.67743 5.71630 5.75529 5.81559 5.95238 5.99517 6.04225 6.07754 6.10056 6.17257 6.23100 6.35377 6.43403 6.49924 6.61389 6.65360 6.84378 7.06583 7.17609 7.36595 7.58963 7.75255 8.15804 8.40059 8.58699 9.91291 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.005326 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.673073 B = 5256.125671 C = 6371.107850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.089 4.089 4 C -0.109 4.109 5 C -0.152 4.152 6 C 0.137 3.863 7 N -1.038 6.038 8 S 2.704 3.296 9 O -0.970 6.970 10 O -0.966 6.966 11 C -0.620 4.620 12 C -0.157 4.157 13 C -0.091 4.091 14 C -0.201 4.201 15 C 0.075 3.925 16 C -0.441 4.441 17 H 0.095 0.905 18 C 0.082 3.918 19 N -0.801 5.801 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.243 1.243 24 C -0.102 4.102 25 C 0.134 3.866 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.288 0.712 42 H 0.118 0.882 43 H 0.082 0.918 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 6.574 -15.675 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.142 4.142 3 C -0.091 4.091 4 C -0.147 4.147 5 C -0.209 4.209 6 C 0.011 3.989 7 N -0.876 5.876 8 S 2.802 3.198 9 O -0.961 6.961 10 O -0.957 6.957 11 C -0.711 4.711 12 C -0.178 4.178 13 C -0.110 4.110 14 C -0.221 4.221 15 C 0.071 3.929 16 C -0.469 4.469 17 H 0.113 0.887 18 C -0.137 4.137 19 N -0.425 5.425 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.166 1.166 24 C -0.123 4.123 25 C 0.009 3.991 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.100 0.900 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.903 7.033 -14.806 16.646 hybrid contribution -0.123 -1.422 -0.330 1.465 sum 2.780 5.611 -15.136 16.380 Atomic orbital electron populations 1.21761 0.95464 1.01989 1.01659 1.21348 0.96233 0.93603 1.03005 1.22623 0.95575 0.96777 0.94131 1.21475 1.01652 0.98286 0.93290 1.21785 1.01632 1.00269 0.97222 1.22792 0.95801 1.01510 0.78760 1.60112 1.26527 1.81000 1.19985 1.01242 0.72721 0.74701 0.71120 1.93508 1.29375 1.87591 1.85607 1.93529 1.73660 1.66670 1.61799 1.29998 1.05118 1.21261 1.14770 1.20031 0.98937 0.92312 1.06538 1.20682 0.96562 0.95508 0.98252 1.21287 0.95676 0.98728 1.06372 1.17787 0.93166 0.91219 0.90761 1.19549 1.05446 0.99536 1.22381 0.88666 1.26172 0.93516 0.97404 0.96637 1.69666 1.20888 1.19877 1.32021 0.86340 0.77499 0.79764 0.82669 1.19540 1.21585 1.16636 1.20841 0.94890 0.97370 0.99199 1.22835 0.85621 0.98467 0.92181 0.92605 0.92297 0.92865 0.91301 0.90704 0.91335 0.91681 0.92346 0.93071 0.92591 0.90198 0.89981 0.87223 0.87950 0.87626 0.90172 0.86411 0.89957 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.58 37.16 0.36 -1.32 16 2 C -0.10 -1.21 4.91 -26.73 -0.13 -1.34 16 3 C -0.09 -0.91 0.59 -153.58 -0.09 -1.00 16 4 C -0.11 -0.85 5.02 -26.73 -0.13 -0.98 16 5 C -0.15 -1.10 9.11 37.16 0.34 -0.76 16 6 C 0.14 1.57 7.99 -2.97 -0.02 1.54 16 7 N -1.04 -15.24 3.96 -118.40 -0.47 -15.71 16 8 S 2.70 51.06 6.23 -107.50 -0.67 50.39 16 9 O -0.97 -19.85 17.24 -57.17 -0.99 -20.84 16 10 O -0.97 -20.52 17.23 -57.17 -0.99 -21.51 16 11 C -0.62 -13.07 5.97 -39.66 -0.24 -13.30 16 12 C -0.16 -3.24 9.53 -39.29 -0.37 -3.61 16 13 C -0.09 -1.90 10.02 -39.66 -0.40 -2.30 16 14 C -0.20 -4.67 7.12 -38.87 -0.28 -4.95 16 15 C 0.07 1.84 5.15 -106.82 -0.55 1.29 16 16 C -0.44 -11.54 9.59 -37.74 -0.36 -11.90 16 17 H 0.10 2.61 8.06 -52.49 -0.42 2.19 16 18 C 0.08 2.08 5.44 -17.34 -0.09 1.98 16 19 N -0.80 -20.59 13.93 55.55 0.77 -19.81 16 20 Si 0.91 19.73 24.43 -169.99 -4.15 15.58 16 21 H -0.27 -5.67 6.62 56.52 0.37 -5.30 16 22 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.24 -5.30 6.80 56.52 0.38 -4.91 16 24 C -0.10 -2.35 9.26 -38.87 -0.36 -2.71 16 25 C 0.13 1.61 7.91 -2.98 -0.02 1.59 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.68 6.75 -51.92 -0.35 0.33 16 28 H 0.05 0.48 7.23 -51.93 -0.38 0.11 16 29 H 0.07 0.71 6.54 -51.93 -0.34 0.37 16 30 H 0.07 1.09 8.01 -51.93 -0.42 0.67 16 31 H 0.07 0.51 7.43 -51.93 -0.39 0.12 16 32 H 0.06 0.46 7.99 -51.93 -0.42 0.04 16 33 H 0.06 0.44 6.95 -51.93 -0.36 0.08 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.40 8.05 -51.93 -0.42 -0.01 16 36 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.08 0.79 8.00 -51.93 -0.42 0.37 16 38 H 0.11 2.04 7.60 -52.49 -0.40 1.64 16 39 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 40 H 0.11 2.42 4.39 -52.48 -0.23 2.18 16 41 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 42 H 0.12 2.63 7.60 -52.49 -0.40 2.23 16 43 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 44 H 0.08 1.05 6.80 -51.93 -0.35 0.70 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -30.30 360.98 -9.98 -40.28 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.57 Total: 3.95 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: -2.36 Total: -37.77 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.31 Total: -35.52 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.97 Total: -42.35 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.15 Total: 15.58 kcal Atomic # 16 Polarization: 51.06 SS G_CDS: -0.67 Total: 50.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.30 -9.98 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590162331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.476 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds