Wall clock time and date at job start Tue Mar 31 2020 13:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47417 * 2 1 4 4 N 1.46500 * 110.43176 * 297.93051 * 3 2 1 5 5 S 1.65597 * 119.99872 * 303.06631 * 4 3 2 6 6 O 1.42102 * 106.40446 * 183.78657 * 5 4 3 7 7 O 1.42099 * 106.40345 * 316.70666 * 5 4 3 8 8 C 1.76200 * 107.21902 * 70.24660 * 5 4 3 9 9 C 1.38660 * 119.87431 * 77.97230 * 8 5 4 10 10 C 1.38614 * 120.50144 * 180.02562 * 9 8 5 11 11 C 1.37634 * 120.24585 * 359.97438 * 10 9 8 12 12 C 1.40698 * 119.75020 * 0.02562 * 11 10 9 13 13 C 1.41394 * 120.25063 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00474 * 145.92780 * 13 12 11 15 15 C 1.39942 * 119.99524 * 325.93535 * 13 12 11 16 16 N 1.30826 * 120.00176 * 351.66892 * 15 13 12 17 17 Si 1.86808 * 119.99873 * 171.66870 * 15 13 12 18 18 H 1.48504 * 109.46664 * 89.99980 * 17 15 13 19 19 H 1.48495 * 109.47215 * 209.99757 * 17 15 13 20 20 H 1.48498 * 109.47095 * 329.99852 * 17 15 13 21 21 C 1.37597 * 119.87788 * 257.70264 * 8 5 4 22 22 C 1.54889 * 110.60093 * 60.54177 * 3 2 1 23 23 C 1.54891 * 102.75098 * 156.68025 * 22 3 2 24 24 C 1.54260 * 104.19330 * 322.05851 * 23 22 3 25 25 C 1.53876 * 106.60076 * 23.61279 * 24 23 22 26 26 H 1.08992 * 109.47408 * 292.98903 * 1 2 3 27 27 H 1.09006 * 109.47036 * 52.98934 * 1 2 3 28 28 H 1.09001 * 109.46952 * 172.98457 * 1 2 3 29 29 H 1.08999 * 109.47559 * 239.99388 * 2 1 3 30 30 H 1.09006 * 109.47258 * 119.99714 * 2 1 3 31 31 H 0.97002 * 120.00082 * 122.79808 * 4 3 2 32 32 H 1.08000 * 119.74688 * 359.97438 * 9 8 5 33 33 H 1.07996 * 119.87306 * 180.02562 * 10 9 8 34 34 H 1.08006 * 120.12704 * 179.97438 * 11 10 9 35 35 H 0.97002 * 119.99766 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.12392 * 0.02562 * 21 8 5 37 37 H 1.09005 * 110.75922 * 274.99733 * 22 3 2 38 38 H 1.09009 * 110.75191 * 38.36403 * 22 3 2 39 39 H 1.09002 * 110.48790 * 203.38057 * 23 22 3 40 40 H 1.09000 * 110.48685 * 80.74108 * 23 22 3 41 41 H 1.09004 * 110.03618 * 264.32611 * 24 23 22 42 42 H 1.09000 * 110.03151 * 142.89593 * 24 23 22 43 43 H 1.09007 * 110.03146 * 240.71325 * 25 24 23 44 44 H 1.08997 * 110.03498 * 119.28336 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.6043 2.1390 -1.2129 5 16 1.9940 1.5300 -2.7027 6 8 1.5126 2.4660 -3.6574 7 8 3.3544 1.1262 -2.6278 8 6 1.0502 0.0593 -2.9282 9 6 -0.2896 0.1448 -3.2749 10 6 -1.0444 -1.0038 -3.4551 11 6 -0.4698 -2.2437 -3.2916 12 6 0.8889 -2.3427 -2.9398 13 6 1.4898 -3.6111 -2.7687 14 1 2.5242 -3.7598 -3.0411 15 6 0.7440 -4.6738 -2.2464 16 7 -0.4535 -4.4586 -1.7657 17 14 1.4585 -6.3998 -2.2357 18 1 2.1983 -6.6214 -0.9672 19 1 0.3588 -7.3915 -2.3471 20 1 2.3864 -6.5586 -3.3842 21 6 1.6469 -1.1698 -2.7650 22 6 1.5495 2.1940 1.2624 23 6 2.5914 3.3305 1.4101 24 6 3.9285 2.6718 1.0129 25 6 3.5780 1.4714 0.1162 26 1 -0.3634 0.4013 0.9460 27 1 -0.3633 0.6187 -0.8207 28 1 -0.3633 -1.0200 -0.1255 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.0841 2.9548 -1.1434 32 1 -0.7487 1.1137 -3.4048 33 1 -2.0870 -0.9254 -3.7255 34 1 -1.0598 -3.1374 -3.4321 35 1 -0.9703 -5.1952 -1.4034 36 1 2.6916 -1.2342 -2.4988 37 1 0.5514 2.6029 1.1051 38 1 1.5667 1.5385 2.1332 39 1 2.6303 3.6808 2.4416 40 1 2.3562 4.1537 0.7354 41 1 4.4561 2.3309 1.9037 42 1 4.5453 3.3818 0.4619 43 1 3.9354 0.5480 0.5720 44 1 4.0246 1.5989 -0.8698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590759513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:16 Heat of formation + Delta-G solvation = -69.586520 kcal Electronic energy + Delta-G solvation = -27082.309001 eV Core-core repulsion = 23511.524030 eV Total energy + Delta-G solvation = -3570.784972 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.23520 -37.75028 -36.60579 -35.30168 -33.89210 -33.47106 -31.41161 -30.07945 -29.75981 -28.69567 -26.73594 -25.47589 -22.58673 -21.86346 -20.98473 -20.36408 -19.98338 -18.69164 -17.76157 -17.09302 -15.97006 -15.75866 -15.30106 -15.12892 -14.89395 -14.66459 -14.26953 -13.73390 -13.46135 -13.36309 -13.07415 -12.72882 -12.56464 -12.30743 -11.85711 -11.67868 -11.60796 -11.56855 -11.32416 -11.31197 -11.18857 -11.05841 -10.99329 -10.92739 -10.82684 -10.71485 -10.63283 -10.57270 -10.16165 -9.93751 -9.72759 -9.59503 -9.36198 -9.02485 -7.94667 -7.56584 -6.83665 -4.53973 1.06737 2.17784 2.62541 3.02379 3.04716 3.07895 3.57656 3.87306 4.25278 4.47627 4.58962 4.72956 4.87560 5.05881 5.31656 5.37572 5.40864 5.58910 5.60068 5.71278 5.77530 5.84717 5.93884 5.96620 6.01596 6.10490 6.11212 6.12901 6.27785 6.34684 6.57793 6.58418 6.63127 6.66588 6.72961 6.77996 6.86484 6.94913 7.07809 7.20840 7.33697 7.35765 7.68202 7.83934 7.93412 8.41348 8.69199 8.74760 10.13318 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015625 B = 0.004923 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.614442 B = 5685.817682 C = 6303.748385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.157 4.157 3 C 0.184 3.816 4 N -1.106 6.106 5 S 2.688 3.312 6 O -0.981 6.981 7 O -0.969 6.969 8 C -0.633 4.633 9 C -0.130 4.130 10 C -0.125 4.125 11 C -0.101 4.101 12 C 0.097 3.903 13 C -0.468 4.468 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.808 5.808 17 Si 0.911 3.089 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.159 4.159 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.411 0.589 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.281 0.719 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 8.865 6.858 11.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.195 4.195 3 C 0.096 3.904 4 N -0.862 5.862 5 S 2.784 3.216 6 O -0.971 6.971 7 O -0.959 6.959 8 C -0.725 4.725 9 C -0.151 4.151 10 C -0.145 4.145 11 C -0.121 4.121 12 C 0.094 3.906 13 C -0.498 4.498 14 H 0.098 0.902 15 C -0.141 4.141 16 N -0.435 5.435 17 Si 0.735 3.265 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.136 4.136 22 C -0.155 4.155 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.197 4.197 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.244 0.756 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.119 8.970 6.378 11.208 hybrid contribution -0.674 -1.109 0.408 1.360 sum 1.445 7.861 6.786 10.485 Atomic orbital electron populations 1.21700 0.94832 1.02906 1.00559 1.22416 0.97695 0.94342 1.05041 1.20937 0.93448 0.91883 0.84137 1.55501 1.71406 1.37424 1.21914 1.01702 0.74119 0.74113 0.71688 1.93525 1.82270 1.62498 1.58809 1.93454 1.32885 1.83755 1.85828 1.29786 1.07932 1.16125 1.18664 1.20000 0.92025 0.97415 1.05690 1.20788 0.98008 0.93328 1.02329 1.21587 0.96439 0.95963 0.98103 1.17633 0.91832 0.92246 0.88938 1.19533 0.98742 0.93499 1.38042 0.90170 1.25827 0.94393 1.00992 0.92882 1.69726 1.10258 1.33945 1.29528 0.86260 0.79475 0.80973 0.79745 1.19465 1.20213 1.18522 1.20795 0.99210 0.90884 1.02718 1.22739 0.98694 0.97127 0.96928 1.22385 0.95270 0.97894 1.00758 1.22104 0.97113 0.97500 0.99173 1.23101 0.94846 0.98525 1.03275 0.94110 0.92123 0.91890 0.88622 0.90959 0.75614 0.88105 0.88507 0.86217 0.90857 0.86589 0.90968 0.90223 0.91944 0.91739 0.92160 0.92143 0.90778 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.79 37.15 0.33 -2.01 16 2 C -0.16 -2.52 4.32 -26.74 -0.12 -2.64 16 3 C 0.18 2.56 0.54 -130.16 -0.07 2.49 16 4 N -1.11 -15.93 4.81 1.87 0.01 -15.92 16 5 S 2.69 49.47 5.42 -107.50 -0.58 48.89 16 6 O -0.98 -20.05 17.63 -57.17 -1.01 -21.05 16 7 O -0.97 -19.42 13.80 -57.17 -0.79 -20.21 16 8 C -0.63 -13.05 3.50 -39.66 -0.14 -13.19 16 9 C -0.13 -2.66 8.13 -39.29 -0.32 -2.98 16 10 C -0.13 -2.66 10.02 -39.66 -0.40 -3.06 16 11 C -0.10 -2.40 8.63 -38.87 -0.34 -2.73 16 12 C 0.10 2.37 5.49 -106.82 -0.59 1.78 16 13 C -0.47 -11.64 9.04 -37.74 -0.34 -11.98 16 14 H 0.08 1.94 7.86 -52.49 -0.41 1.53 16 15 C 0.08 1.78 5.27 -17.34 -0.09 1.69 16 16 N -0.81 -19.57 11.09 55.55 0.62 -18.95 16 17 Si 0.91 18.04 29.57 -169.99 -5.03 13.01 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 21 C -0.11 -2.59 6.71 -38.87 -0.26 -2.85 16 22 C -0.12 -1.28 4.84 -24.74 -0.12 -1.40 16 23 C -0.13 -1.27 6.79 -25.07 -0.17 -1.44 16 24 C -0.12 -1.37 6.80 -25.62 -0.17 -1.54 16 25 C -0.16 -2.22 5.78 -25.61 -0.15 -2.37 16 26 H 0.04 0.56 7.55 -51.93 -0.39 0.17 16 27 H 0.06 0.99 5.45 -51.93 -0.28 0.71 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.10 1.79 3.30 -51.93 -0.17 1.62 16 30 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 31 H 0.41 4.88 8.63 -34.47 -0.30 4.59 16 32 H 0.10 1.86 7.91 -52.49 -0.41 1.45 16 33 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.12 2.94 6.56 -52.48 -0.34 2.59 16 35 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 36 H 0.12 2.58 7.06 -52.49 -0.37 2.21 16 37 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.08 0.84 8.06 -51.92 -0.42 0.42 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.01 7.80 -51.93 -0.41 0.60 16 44 H 0.11 1.71 5.11 -51.93 -0.27 1.44 16 LS Contribution 346.80 15.07 5.23 5.23 Total: -1.00 -27.94 346.80 -10.78 -38.72 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.29 Total: 12.52 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: -2.94 Total: -42.23 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.63 Total: -34.88 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.80 Total: -41.27 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: 49.47 SS G_CDS: -0.58 Total: 48.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.94 -10.78 -38.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590759513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.864 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds