Wall clock time and date at job start Tue Mar 31 2020 14:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46636 * 2 1 4 4 C 1.52989 * 109.47332 * 120.00360 * 2 1 3 5 5 C 1.52999 * 109.47536 * 65.00258 * 4 2 1 6 6 H 1.09002 * 115.54765 * 29.32898 * 5 4 2 7 7 C 1.53001 * 117.49911 * 243.62587 * 5 4 2 8 8 C 1.52996 * 117.50240 * 175.00265 * 5 4 2 9 9 H 1.08998 * 117.49977 * 359.97438 * 8 5 4 10 10 N 1.46503 * 117.49858 * 214.97964 * 8 5 4 11 11 S 1.65600 * 119.99907 * 144.99483 * 10 8 5 12 12 O 1.42096 * 106.40544 * 311.46133 * 11 10 8 13 13 O 1.42101 * 106.40023 * 178.54137 * 11 10 8 14 14 C 1.76201 * 107.21484 * 65.00339 * 11 10 8 15 15 C 1.38657 * 119.87778 * 90.00221 * 14 11 10 16 16 C 1.38613 * 120.50282 * 180.02562 * 15 14 11 17 17 C 1.37631 * 120.24602 * 359.96766 * 16 15 14 18 18 C 1.40701 * 119.75063 * 0.02562 * 17 16 15 19 19 C 1.41391 * 120.25069 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00159 * 204.41891 * 19 18 17 21 21 C 1.39949 * 119.99617 * 24.41628 * 19 18 17 22 22 N 1.30818 * 120.00221 * 17.83992 * 21 19 18 23 23 Si 1.86802 * 119.99875 * 197.83164 * 21 19 18 24 24 H 1.48507 * 109.46688 * 90.00395 * 23 21 19 25 25 H 1.48498 * 109.47165 * 210.00340 * 23 21 19 26 26 H 1.48497 * 109.47387 * 330.00433 * 23 21 19 27 27 C 1.37592 * 119.87494 * 269.97344 * 14 11 10 28 28 H 1.09006 * 109.46683 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47465 * 299.99315 * 1 2 3 30 30 H 1.08999 * 109.47611 * 59.99994 * 1 2 3 31 31 H 1.08997 * 109.46993 * 240.00880 * 2 1 3 32 32 H 1.09004 * 109.47202 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47632 * 300.00415 * 3 2 1 34 34 H 1.09005 * 109.47070 * 60.00195 * 3 2 1 35 35 H 1.09010 * 109.47191 * 305.00005 * 4 2 1 36 36 H 1.09004 * 109.46974 * 185.00563 * 4 2 1 37 37 H 1.08997 * 117.50019 * 145.01883 * 7 5 4 38 38 H 1.09002 * 117.49825 * 359.97438 * 7 5 4 39 39 H 0.96998 * 119.99811 * 325.00109 * 10 8 5 40 40 H 1.08004 * 119.75103 * 359.97068 * 15 14 11 41 41 H 1.07994 * 119.87452 * 179.69807 * 16 15 14 42 42 H 1.08007 * 120.13014 * 179.97438 * 17 16 15 43 43 H 0.96997 * 120.00564 * 179.97438 * 22 21 19 44 44 H 1.08003 * 120.12921 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6354 -2.1955 1.1878 6 1 1.5393 -2.6154 0.1865 7 6 0.6792 -2.7110 2.2652 8 6 2.1540 -3.1171 2.2935 9 1 2.7839 -2.6732 3.0644 10 7 2.4831 -4.4964 1.9255 11 16 3.7521 -5.2684 2.6577 12 8 4.8539 -4.3730 2.5998 13 8 3.7887 -6.5819 2.1167 14 6 3.3424 -5.4437 4.3624 15 6 2.6695 -6.5749 4.7983 16 6 2.3403 -6.7259 6.1363 17 6 2.6795 -5.7522 7.0479 18 6 3.3626 -4.6000 6.6171 19 6 3.7158 -3.5928 7.5444 20 1 3.8672 -2.5778 7.2077 21 6 3.8692 -3.9112 8.8985 22 7 4.0340 -5.1567 9.2631 23 14 3.8387 -2.5575 10.1855 24 1 2.4437 -2.3465 10.6489 25 1 4.6890 -2.9507 11.3377 26 1 4.3591 -1.2993 9.5929 27 6 3.6919 -4.4577 5.2562 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 1.6054 -0.2618 2.1369 36 1 3.1264 -0.6442 1.2950 37 1 -0.0463 -3.4702 1.9729 38 1 0.3387 -2.0000 3.0180 39 1 1.9577 -4.9574 1.2530 40 1 2.3989 -7.3439 4.0898 41 1 1.8118 -7.6089 6.4639 42 1 2.4217 -5.8716 8.0899 43 1 4.1406 -5.3773 10.2016 44 1 4.2161 -3.5773 4.9146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591330336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:19 Heat of formation + Delta-G solvation = -58.852708 kcal Electronic energy + Delta-G solvation = -25006.015235 eV Core-core repulsion = 21435.695716 eV Total energy + Delta-G solvation = -3570.319519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.61617 -37.64566 -36.65462 -35.71676 -35.30744 -33.85492 -32.04621 -30.08929 -29.80490 -27.29209 -27.26357 -25.49594 -22.06326 -21.91357 -21.10579 -20.88886 -20.20678 -19.12646 -17.97728 -17.01108 -16.34071 -15.90325 -15.29668 -15.24463 -14.73321 -14.69115 -14.37523 -13.97655 -13.48668 -13.38365 -13.32784 -12.85587 -12.60174 -12.35317 -12.10406 -12.01070 -11.86605 -11.71333 -11.60615 -11.53414 -11.47428 -11.41421 -11.35443 -11.06710 -10.99988 -10.94057 -10.87119 -10.75787 -10.60491 -9.90956 -9.76621 -9.58254 -9.36585 -8.75302 -8.04533 -7.71446 -6.93155 -4.54589 0.98819 2.18899 2.62090 2.99267 3.02906 3.05560 3.49119 3.81948 3.83718 4.24544 4.42981 4.51640 4.75490 4.79693 4.91992 5.00453 5.03316 5.13886 5.30506 5.40738 5.42336 5.49620 5.58514 5.61698 5.70351 5.84625 5.86360 5.93861 6.03862 6.05089 6.16674 6.16802 6.21509 6.28220 6.39381 6.63792 6.74622 6.83637 7.02563 7.15157 7.22170 7.37157 7.71843 7.79033 7.93125 8.38913 8.66089 8.70705 10.02519 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.003880 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.856711 B = 7214.450545 C = 8962.924812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.088 4.088 5 C -0.157 4.157 6 H 0.105 0.895 7 C -0.183 4.183 8 C 0.097 3.903 9 H 0.138 0.862 10 N -1.091 6.091 11 S 2.690 3.310 12 O -0.968 6.968 13 O -0.975 6.975 14 C -0.629 4.629 15 C -0.145 4.145 16 C -0.121 4.121 17 C -0.117 4.117 18 C 0.092 3.908 19 C -0.461 4.461 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.793 5.793 23 Si 0.912 3.088 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.260 1.260 27 C -0.128 4.128 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.412 0.588 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.284 0.716 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 7.702 -11.657 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.126 4.126 5 C -0.178 4.178 6 H 0.123 0.877 7 C -0.223 4.223 8 C -0.011 4.011 9 H 0.155 0.845 10 N -0.845 5.845 11 S 2.786 3.214 12 O -0.958 6.958 13 O -0.966 6.966 14 C -0.721 4.721 15 C -0.166 4.166 16 C -0.141 4.141 17 C -0.137 4.137 18 C 0.089 3.911 19 C -0.490 4.490 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.418 5.418 23 Si 0.736 3.264 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.184 1.184 27 C -0.149 4.149 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.245 0.755 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.143 0.857 43 H 0.095 0.905 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.458 7.356 -11.756 15.298 hybrid contribution -0.702 0.218 1.095 1.319 sum -7.161 7.574 -10.661 14.910 Atomic orbital electron populations 1.21844 0.95268 1.01938 1.01253 1.21102 0.95914 0.95919 0.98286 1.21855 1.01089 0.96105 1.01573 1.21290 1.01215 0.92034 0.98023 1.22851 1.04155 0.95270 0.95475 0.87660 1.23563 0.93422 1.03625 1.01651 1.21417 0.97380 0.81835 1.00504 0.84458 1.55217 1.52874 1.21688 1.54696 1.01672 0.72729 0.72449 0.74548 1.93538 1.49301 1.65764 1.87204 1.93525 1.86124 1.37754 1.79192 1.29706 1.16570 1.04454 1.21405 1.20078 1.03911 0.96388 0.96255 1.20811 1.01230 0.98622 0.93406 1.21654 0.97940 0.94825 0.99291 1.17669 0.89439 0.92797 0.91195 1.19608 1.41486 0.96418 0.91512 0.89916 1.25938 0.92009 0.96436 0.99942 1.69777 1.33630 1.19280 1.19157 0.86243 0.79193 0.81495 0.79466 1.19172 1.20197 1.18414 1.20732 1.02267 0.97660 0.94286 0.92326 0.92780 0.93320 0.91336 0.92623 0.92951 0.92677 0.91362 0.91079 0.88567 0.87962 0.75473 0.87641 0.88387 0.85740 0.90535 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.01 37.16 0.33 -0.82 16 2 C -0.09 -0.79 2.88 -90.62 -0.26 -1.06 16 3 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 4 C -0.09 -0.86 4.96 -26.74 -0.13 -1.00 16 5 C -0.16 -1.66 4.65 -90.62 -0.42 -2.08 16 6 H 0.11 1.04 8.07 -51.93 -0.42 0.62 16 7 C -0.18 -2.01 10.10 -26.73 -0.27 -2.28 16 8 C 0.10 1.29 6.19 -67.93 -0.42 0.87 16 9 H 0.14 1.97 8.11 -51.93 -0.42 1.55 16 10 N -1.09 -15.49 6.04 -4.89 -0.03 -15.52 16 11 S 2.69 50.30 5.71 -107.50 -0.61 49.68 16 12 O -0.97 -20.42 17.02 -57.17 -0.97 -21.39 16 13 O -0.98 -19.97 17.27 -57.17 -0.99 -20.96 16 14 C -0.63 -13.64 5.94 -39.66 -0.24 -13.87 16 15 C -0.15 -3.16 9.53 -39.29 -0.37 -3.53 16 16 C -0.12 -2.72 10.02 -39.66 -0.40 -3.12 16 17 C -0.12 -2.90 8.70 -38.87 -0.34 -3.24 16 18 C 0.09 2.35 5.57 -106.82 -0.60 1.76 16 19 C -0.46 -11.63 9.05 -37.74 -0.34 -11.98 16 20 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 21 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 22 N -0.79 -19.68 10.95 55.55 0.61 -19.07 16 23 Si 0.91 17.84 29.60 -169.99 -5.03 12.81 16 24 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 25 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 27 C -0.13 -3.02 9.26 -38.87 -0.36 -3.38 16 28 H 0.06 0.47 7.38 -51.93 -0.38 0.09 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.66 7.88 -51.92 -0.41 0.25 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 1.07 8.03 -51.93 -0.42 0.65 16 39 H 0.41 4.75 8.96 -34.47 -0.31 4.44 16 40 H 0.11 2.08 7.60 -52.48 -0.40 1.68 16 41 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.12 3.13 6.16 -52.48 -0.32 2.80 16 43 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 44 H 0.11 2.48 7.60 -52.48 -0.40 2.08 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -29.96 377.31 -11.74 -41.69 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.83 Total: 9.92 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: -3.56 Total: -42.83 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.58 Total: -34.60 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -1.96 Total: -42.36 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 16 Polarization: 50.30 SS G_CDS: -0.61 Total: 49.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.96 -11.74 -41.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591330336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.161 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds