Wall clock time and date at job start Tue Mar 31 2020 14:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46636 * 2 1 4 4 C 1.52989 * 109.47332 * 120.00360 * 2 1 3 5 5 C 1.52999 * 109.47536 * 65.00258 * 4 2 1 6 6 H 1.09002 * 115.54765 * 29.32898 * 5 4 2 7 7 C 1.53001 * 117.49911 * 243.62587 * 5 4 2 8 8 C 1.52996 * 117.50240 * 175.00265 * 5 4 2 9 9 H 1.08998 * 117.49977 * 359.97438 * 8 5 4 10 10 N 1.46503 * 117.49858 * 214.97964 * 8 5 4 11 11 S 1.65600 * 119.99907 * 144.99483 * 10 8 5 12 12 O 1.42096 * 106.40544 * 311.46133 * 11 10 8 13 13 O 1.42101 * 106.40023 * 178.54137 * 11 10 8 14 14 C 1.76201 * 107.21484 * 65.00339 * 11 10 8 15 15 C 1.38657 * 119.87778 * 90.00221 * 14 11 10 16 16 C 1.38613 * 120.50282 * 180.02562 * 15 14 11 17 17 C 1.37631 * 120.24602 * 359.96766 * 16 15 14 18 18 C 1.40701 * 119.75063 * 0.02562 * 17 16 15 19 19 C 1.41391 * 120.25069 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00159 * 204.41891 * 19 18 17 21 21 C 1.39949 * 119.99617 * 24.41628 * 19 18 17 22 22 N 1.30818 * 120.00221 * 17.83992 * 21 19 18 23 23 Si 1.86802 * 119.99875 * 197.83164 * 21 19 18 24 24 H 1.48507 * 109.46688 * 90.00395 * 23 21 19 25 25 H 1.48498 * 109.47165 * 210.00340 * 23 21 19 26 26 H 1.48497 * 109.47387 * 330.00433 * 23 21 19 27 27 C 1.37592 * 119.87494 * 269.97344 * 14 11 10 28 28 H 1.09006 * 109.46683 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47465 * 299.99315 * 1 2 3 30 30 H 1.08999 * 109.47611 * 59.99994 * 1 2 3 31 31 H 1.08997 * 109.46993 * 240.00880 * 2 1 3 32 32 H 1.09004 * 109.47202 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47632 * 300.00415 * 3 2 1 34 34 H 1.09005 * 109.47070 * 60.00195 * 3 2 1 35 35 H 1.09010 * 109.47191 * 305.00005 * 4 2 1 36 36 H 1.09004 * 109.46974 * 185.00563 * 4 2 1 37 37 H 1.08997 * 117.50019 * 145.01883 * 7 5 4 38 38 H 1.09002 * 117.49825 * 359.97438 * 7 5 4 39 39 H 0.96998 * 119.99811 * 325.00109 * 10 8 5 40 40 H 1.08004 * 119.75103 * 359.97068 * 15 14 11 41 41 H 1.07994 * 119.87452 * 179.69807 * 16 15 14 42 42 H 1.08007 * 120.13014 * 179.97438 * 17 16 15 43 43 H 0.96997 * 120.00564 * 179.97438 * 22 21 19 44 44 H 1.08003 * 120.12921 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6354 -2.1955 1.1878 6 1 1.5393 -2.6154 0.1865 7 6 0.6792 -2.7110 2.2652 8 6 2.1540 -3.1171 2.2935 9 1 2.7839 -2.6732 3.0644 10 7 2.4831 -4.4964 1.9255 11 16 3.7521 -5.2684 2.6577 12 8 4.8539 -4.3730 2.5998 13 8 3.7887 -6.5819 2.1167 14 6 3.3424 -5.4437 4.3624 15 6 2.6695 -6.5749 4.7983 16 6 2.3403 -6.7259 6.1363 17 6 2.6795 -5.7522 7.0479 18 6 3.3626 -4.6000 6.6171 19 6 3.7158 -3.5928 7.5444 20 1 3.8672 -2.5778 7.2077 21 6 3.8692 -3.9112 8.8985 22 7 4.0340 -5.1567 9.2631 23 14 3.8387 -2.5575 10.1855 24 1 2.4437 -2.3465 10.6489 25 1 4.6890 -2.9507 11.3377 26 1 4.3591 -1.2993 9.5929 27 6 3.6919 -4.4577 5.2562 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 1.6054 -0.2618 2.1369 36 1 3.1264 -0.6442 1.2950 37 1 -0.0463 -3.4702 1.9729 38 1 0.3387 -2.0000 3.0180 39 1 1.9577 -4.9574 1.2530 40 1 2.3989 -7.3439 4.0898 41 1 1.8118 -7.6089 6.4639 42 1 2.4217 -5.8716 8.0899 43 1 4.1406 -5.3773 10.2016 44 1 4.2161 -3.5773 4.9146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591330336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:19 Heat of formation + Delta-G solvation = -76.034301 kcal Electronic energy + Delta-G solvation = -25006.760284 eV Core-core repulsion = 21435.695716 eV Total energy + Delta-G solvation = -3571.064568 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.56183 -39.42023 -38.25654 -36.93299 -36.52313 -35.66756 -33.14689 -31.91791 -31.59349 -28.06114 -27.90236 -27.34371 -23.67497 -23.15784 -22.73050 -21.85209 -21.05974 -20.52652 -19.62762 -18.49595 -17.74917 -17.44903 -16.96509 -16.47305 -16.16741 -15.96705 -15.36149 -15.24958 -15.06124 -14.70502 -14.32408 -14.16123 -13.82058 -13.66668 -13.30684 -13.24152 -13.15623 -13.07581 -13.04181 -13.01466 -12.89091 -12.84516 -12.71239 -12.57774 -12.25461 -12.19612 -11.75068 -11.69957 -11.54206 -11.43670 -11.30070 -11.14372 -10.81511 -9.89046 -9.80123 -9.56217 -8.72870 -6.44891 -0.53045 0.40626 0.84258 1.37907 1.46912 1.51305 2.07565 2.18135 2.54354 2.74937 2.95525 3.41649 3.53449 3.75488 3.87957 4.02783 4.10496 4.19870 4.22647 4.30707 4.38741 4.44779 4.65287 4.83636 4.87445 4.88338 4.90095 4.92171 5.00673 5.04310 5.06862 5.14780 5.20735 5.24610 5.31696 5.36878 5.41102 5.46046 5.53586 5.56254 5.61208 5.88818 5.93820 6.08552 6.12364 6.52755 6.80237 6.84879 8.25331 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.003880 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.856711 B = 7214.450545 C = 8962.924812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.091 4.091 5 C -0.135 4.135 6 H 0.120 0.880 7 C -0.170 4.170 8 C 0.060 3.940 9 H 0.120 0.880 10 N -1.072 6.072 11 S 2.722 3.278 12 O -0.992 6.992 13 O -0.989 6.989 14 C -0.636 4.636 15 C -0.149 4.149 16 C -0.123 4.123 17 C -0.142 4.142 18 C 0.064 3.936 19 C -0.496 4.496 20 H 0.082 0.918 21 C 0.036 3.964 22 N -0.825 5.825 23 Si 0.984 3.016 24 H -0.259 1.259 25 H -0.269 1.269 26 H -0.257 1.257 27 C -0.143 4.143 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.428 0.572 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.291 0.709 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 8.363 -12.796 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.129 4.129 5 C -0.156 4.156 6 H 0.138 0.862 7 C -0.210 4.210 8 C -0.048 4.048 9 H 0.138 0.862 10 N -0.831 5.831 11 S 2.815 3.185 12 O -0.982 6.982 13 O -0.980 6.980 14 C -0.725 4.725 15 C -0.170 4.170 16 C -0.143 4.143 17 C -0.161 4.161 18 C 0.061 3.939 19 C -0.525 4.525 20 H 0.100 0.900 21 C -0.179 4.179 22 N -0.451 5.451 23 Si 0.805 3.195 24 H -0.183 1.183 25 H -0.194 1.194 26 H -0.181 1.181 27 C -0.164 4.164 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.265 0.735 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.131 0.869 43 H 0.102 0.898 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.753 7.995 -12.883 17.030 hybrid contribution -0.330 -0.012 1.316 1.357 sum -8.084 7.983 -11.567 16.213 Atomic orbital electron populations 1.21829 0.94600 1.02080 1.01626 1.21083 0.96414 0.96033 0.97438 1.21855 1.00897 0.95858 1.02030 1.21336 1.00724 0.91832 0.98982 1.22915 1.02264 0.94958 0.95472 0.86204 1.23649 0.92099 1.03588 1.01641 1.21585 0.99219 0.81598 1.02432 0.86216 1.54697 1.52260 1.21954 1.54191 1.00696 0.72857 0.71840 0.73127 1.93507 1.51221 1.66378 1.87108 1.93497 1.86696 1.38957 1.78818 1.30213 1.15211 1.03696 1.23393 1.20452 1.03212 0.96816 0.96490 1.21134 1.00736 0.98892 0.93491 1.21660 0.99391 0.95786 0.99305 1.18026 0.90099 0.93488 0.92263 1.19880 1.43248 0.96556 0.92834 0.89968 1.26783 0.90935 0.98770 1.01451 1.69824 1.34078 1.21107 1.20070 0.85162 0.79517 0.78272 0.76582 1.18321 1.19391 1.18109 1.20818 1.02941 0.98484 0.94165 0.92275 0.92921 0.92490 0.91091 0.92981 0.91997 0.92738 0.91315 0.92034 0.87164 0.87564 0.73521 0.85213 0.85651 0.86905 0.89777 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.01 71.98 0.65 -1.30 16 2 C -0.09 -1.37 2.88 -10.80 -0.03 -1.40 16 3 C -0.15 -2.12 9.19 71.98 0.66 -1.46 16 4 C -0.09 -1.67 4.96 30.59 0.15 -1.52 16 5 C -0.14 -2.60 4.65 -10.79 -0.05 -2.65 16 6 H 0.12 1.99 8.07 -2.39 -0.02 1.97 16 7 C -0.17 -3.39 10.10 30.59 0.31 -3.08 16 8 C 0.06 1.53 6.19 44.99 0.28 1.80 16 9 H 0.12 3.51 8.11 -2.39 -0.02 3.49 16 10 N -1.07 -28.81 6.04 -169.39 -1.02 -29.84 16 11 S 2.72 99.80 5.71 -56.49 -0.32 99.48 16 12 O -0.99 -41.86 17.02 -128.00 -2.18 -44.04 16 13 O -0.99 -39.03 17.27 -128.00 -2.21 -41.24 16 14 C -0.64 -27.58 5.94 22.22 0.13 -27.45 16 15 C -0.15 -6.37 9.53 22.46 0.21 -6.15 16 16 C -0.12 -5.51 10.02 22.22 0.22 -5.29 16 17 C -0.14 -7.18 8.70 22.73 0.20 -6.99 16 18 C 0.06 3.39 5.57 -21.29 -0.12 3.27 16 19 C -0.50 -25.92 9.05 23.46 0.21 -25.70 16 20 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 21 C 0.04 1.75 5.14 85.26 0.44 2.19 16 22 N -0.83 -41.87 10.95 21.83 0.24 -41.63 16 23 Si 0.98 36.79 29.60 68.60 2.03 38.82 16 24 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 25 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 26 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 27 C -0.14 -6.93 9.26 22.73 0.21 -6.72 16 28 H 0.06 0.79 7.38 -2.38 -0.02 0.77 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.07 1.25 7.88 -2.38 -0.02 1.23 16 36 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.11 2.05 8.03 -2.39 -0.02 2.03 16 39 H 0.43 8.81 8.96 -96.75 -0.87 7.94 16 40 H 0.13 4.85 7.60 -2.91 -0.02 4.83 16 41 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 42 H 0.11 5.88 6.16 -2.91 -0.02 5.87 16 43 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 44 H 0.11 5.20 7.60 -2.91 -0.02 5.18 16 Total: -1.00 -64.78 377.31 0.14 -64.64 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.13 Total: 36.25 kcal Atomic # 6 Polarization: -85.91 SS G_CDS: 3.48 Total: -82.44 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -0.78 Total: -71.47 kcal Atomic # 8 Polarization: -80.89 SS G_CDS: -4.39 Total: -85.28 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Atomic # 16 Polarization: 99.80 SS G_CDS: -0.32 Total: 99.48 kcal Total: -64.78 0.14 -64.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591330336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.395 kcal (2) G-P(sol) polarization free energy of solvation -64.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds