Wall clock time and date at job start Tue Mar 31 2020 13:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47356 * 2 1 4 4 C 1.53001 * 109.46862 * 119.99886 * 2 1 3 5 5 C 1.53002 * 115.56125 * 34.30867 * 4 2 1 6 6 C 1.53001 * 117.49789 * 248.62078 * 4 2 1 7 7 C 1.52996 * 60.00105 * 252.51111 * 6 4 2 8 8 H 1.08996 * 117.49878 * 107.50879 * 7 6 4 9 9 N 1.46503 * 117.49723 * 252.51222 * 7 6 4 10 10 S 1.65606 * 119.99686 * 213.60743 * 9 7 6 11 11 O 1.42104 * 106.40005 * 311.46143 * 10 9 7 12 12 O 1.42098 * 106.39892 * 178.54287 * 10 9 7 13 13 C 1.76195 * 107.21915 * 64.99881 * 10 9 7 14 14 C 1.38661 * 119.87766 * 270.02192 * 13 10 9 15 15 C 1.38610 * 120.49980 * 179.97438 * 14 13 10 16 16 C 1.37635 * 120.24972 * 359.76776 * 15 14 13 17 17 C 1.40696 * 119.74512 * 0.48092 * 16 15 14 18 18 C 1.41398 * 120.24692 * 179.76639 * 17 16 15 19 19 H 1.07999 * 120.00175 * 205.36594 * 18 17 16 20 20 C 1.39951 * 119.99793 * 25.36096 * 18 17 16 21 21 N 1.30820 * 119.99696 * 200.09394 * 20 18 17 22 22 Si 1.86796 * 119.99704 * 20.09370 * 20 18 17 23 23 H 1.48497 * 109.47314 * 264.67837 * 22 20 18 24 24 H 1.48505 * 109.47105 * 144.68042 * 22 20 18 25 25 H 1.48497 * 109.47612 * 24.68084 * 22 20 18 26 26 C 1.37596 * 119.87268 * 89.99753 * 13 10 9 27 27 H 1.09005 * 109.47248 * 300.00730 * 1 2 3 28 28 H 1.09006 * 109.46817 * 59.99737 * 1 2 3 29 29 H 1.08997 * 109.47654 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46924 * 239.99849 * 2 1 3 31 31 H 1.08992 * 109.47116 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46816 * 300.00122 * 3 2 1 33 33 H 1.09006 * 109.46806 * 59.99572 * 3 2 1 34 34 H 1.09002 * 109.46922 * 205.68936 * 5 4 2 35 35 H 1.08994 * 109.47391 * 325.68752 * 5 4 2 36 36 H 1.08998 * 109.46995 * 85.69175 * 5 4 2 37 37 H 1.09004 * 117.49749 * 145.01731 * 6 4 2 38 38 H 1.09006 * 117.51888 * 359.97438 * 6 4 2 39 39 H 0.96996 * 120.00280 * 33.61324 * 9 7 6 40 40 H 1.07996 * 119.74441 * 0.02562 * 14 13 10 41 41 H 1.08000 * 119.87539 * 179.97438 * 15 14 13 42 42 H 1.07999 * 120.12945 * 180.28068 * 16 15 14 43 43 H 0.97000 * 120.00388 * 5.10952 * 21 20 18 44 44 H 1.07997 * 120.12839 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.1850 -1.8962 1.7284 6 6 2.7418 0.1227 2.3152 7 6 3.5550 -0.8281 1.4344 8 1 4.1886 -0.3846 0.6664 9 7 4.0760 -2.0476 2.0569 10 16 5.5302 -2.6708 1.5674 11 8 5.4905 -2.7143 0.1476 12 8 5.7675 -3.8164 2.3738 13 6 6.7715 -1.4956 1.9946 14 6 7.1246 -0.5045 1.0914 15 6 8.0990 0.4268 1.4143 16 6 8.7241 0.3800 2.6396 17 6 8.3777 -0.6244 3.5620 18 6 9.0167 -0.6855 4.8219 19 1 9.0791 -1.6251 5.3508 20 6 9.5683 0.4716 5.3835 21 7 10.4781 0.3751 6.3186 22 14 9.0055 2.1537 4.7978 23 1 9.9370 2.6516 3.7540 24 1 8.9950 3.0987 5.9433 25 1 7.6372 2.0482 4.2306 26 6 7.3866 -1.5646 3.2235 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.3349 -2.0421 2.7982 35 1 0.1338 -1.6835 1.5346 36 1 1.4775 -2.8000 1.1940 37 1 2.5945 -0.1592 3.3578 38 1 2.8409 1.1917 2.1265 39 1 3.5692 -2.4901 2.7556 40 1 6.6360 -0.4575 0.1295 41 1 8.3664 1.1942 0.7030 42 1 9.4799 1.1094 2.8909 43 1 10.8241 -0.4953 6.5707 44 1 7.1101 -2.3373 3.9255 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591330495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:46 Heat of formation + Delta-G solvation = -68.785863 kcal Electronic energy + Delta-G solvation = -25703.144525 eV Core-core repulsion = 22132.394272 eV Total energy + Delta-G solvation = -3570.750253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36388 -39.71595 -38.33213 -36.99519 -35.80312 -35.44442 -32.41303 -32.24105 -31.90680 -30.15577 -27.02619 -26.93258 -24.17329 -23.91160 -22.86084 -22.48201 -20.96029 -20.15465 -19.25342 -18.65023 -18.16580 -17.38434 -17.08894 -16.53528 -16.41669 -15.83679 -15.65497 -15.32182 -15.07791 -14.59245 -14.24517 -14.06247 -14.02003 -13.69927 -13.66928 -13.49893 -13.38625 -13.27397 -13.19868 -13.16094 -12.84044 -12.63231 -12.55694 -12.34190 -12.30023 -12.00140 -11.83373 -11.73271 -11.68873 -11.46959 -11.36063 -11.05942 -10.59409 -10.03295 -9.79802 -9.76477 -9.42736 -6.69391 -0.60905 0.15549 0.67280 1.33251 1.50481 1.71829 1.98493 2.14024 2.40546 2.66239 2.87789 3.26831 3.37366 3.78289 3.82794 3.92888 4.01291 4.10127 4.18125 4.30009 4.32702 4.41953 4.52443 4.70272 4.73524 4.86638 4.89631 4.92276 4.97014 4.99930 5.09266 5.14630 5.15007 5.25832 5.26142 5.31221 5.35575 5.42574 5.45635 5.55849 5.59321 5.60774 5.65236 5.83655 6.01672 6.25089 6.43758 6.67190 7.88011 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.004104 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.204660 B = 6820.278219 C = 7627.290657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.154 4.154 4 C -0.113 4.113 5 C -0.127 4.127 6 C -0.178 4.178 7 C 0.068 3.932 8 H 0.134 0.866 9 N -1.074 6.074 10 S 2.719 3.281 11 O -0.978 6.978 12 O -0.997 6.997 13 C -0.627 4.627 14 C -0.146 4.146 15 C -0.089 4.089 16 C -0.212 4.212 17 C 0.058 3.942 18 C -0.548 4.548 19 H 0.049 0.951 20 C 0.012 3.988 21 N -0.834 5.834 22 Si 1.099 2.901 23 H -0.253 1.253 24 H -0.278 1.278 25 H -0.255 1.255 26 C -0.133 4.133 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.425 0.575 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.113 0.887 43 H 0.280 0.720 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.073 4.090 -10.792 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.211 4.211 4 C -0.116 4.116 5 C -0.184 4.184 6 C -0.217 4.217 7 C -0.040 4.040 8 H 0.152 0.848 9 N -0.833 5.833 10 S 2.811 3.189 11 O -0.968 6.968 12 O -0.987 6.987 13 C -0.716 4.716 14 C -0.167 4.167 15 C -0.107 4.107 16 C -0.231 4.231 17 C 0.055 3.945 18 C -0.577 4.577 19 H 0.067 0.933 20 C -0.203 4.203 21 N -0.456 5.456 22 Si 0.919 3.081 23 H -0.178 1.178 24 H -0.205 1.205 25 H -0.179 1.179 26 C -0.154 4.154 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.261 0.739 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.131 0.869 43 H 0.090 0.910 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.570 4.872 -10.967 22.110 hybrid contribution 0.777 -1.926 1.165 2.381 sum -17.793 2.946 -9.802 20.527 Atomic orbital electron populations 1.21872 0.93754 1.02191 1.02162 1.20647 0.96707 0.95659 0.95142 1.22017 1.01024 0.95549 1.02545 1.22165 0.92047 0.99350 0.98049 1.21506 1.00319 0.95780 1.00838 1.23898 1.02333 0.98747 0.96770 1.21735 0.94515 0.87304 1.00426 0.84827 1.54749 1.36761 1.38479 1.53294 1.00835 0.72620 0.72589 0.72816 1.93516 1.86753 1.86602 1.29914 1.93517 1.85451 1.48754 1.71021 1.30382 1.20185 1.17843 1.03176 1.20599 1.01505 0.95747 0.98825 1.21175 0.95286 0.98538 0.95719 1.21501 1.03864 1.02219 0.95531 1.17980 0.90702 0.92553 0.93306 1.20674 1.34788 0.97656 1.04618 0.93305 1.28444 0.91046 1.08205 0.92578 1.70592 1.19671 1.29814 1.25545 0.83309 0.78773 0.69727 0.76284 1.17800 1.20517 1.17902 1.20828 0.98022 1.01090 0.95445 0.92213 0.92036 0.91917 0.91173 0.92899 0.91727 0.91612 0.92155 0.89646 0.92534 0.88217 0.86377 0.73871 0.83914 0.83418 0.86938 0.90960 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.20 71.98 0.59 -1.12 16 2 C -0.06 -0.96 3.15 -10.79 -0.03 -0.99 16 3 C -0.15 -2.17 7.79 71.98 0.56 -1.61 16 4 C -0.11 -2.01 2.47 -52.18 -0.13 -2.14 16 5 C -0.13 -2.01 8.63 71.98 0.62 -1.39 16 6 C -0.18 -3.37 9.14 30.59 0.28 -3.09 16 7 C 0.07 1.55 5.81 44.99 0.26 1.81 16 8 H 0.13 3.06 7.57 -2.39 -0.02 3.05 16 9 N -1.07 -28.02 5.68 -169.39 -0.96 -28.99 16 10 S 2.72 94.12 5.71 -56.49 -0.32 93.79 16 11 O -0.98 -35.91 17.03 -128.00 -2.18 -38.09 16 12 O -1.00 -40.54 17.26 -128.00 -2.21 -42.75 16 13 C -0.63 -25.14 5.94 22.22 0.13 -25.01 16 14 C -0.15 -5.39 9.53 22.46 0.21 -5.17 16 15 C -0.09 -3.32 10.02 22.22 0.22 -3.10 16 16 C -0.21 -9.47 7.21 22.73 0.16 -9.30 16 17 C 0.06 2.93 5.20 -21.29 -0.11 2.82 16 18 C -0.55 -30.24 9.44 23.46 0.22 -30.02 16 19 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 20 C 0.01 0.63 5.40 85.26 0.46 1.09 16 21 N -0.83 -45.30 13.65 21.83 0.30 -45.00 16 22 Si 1.10 45.92 24.83 68.60 1.70 47.63 16 23 H -0.25 -9.52 6.64 99.48 0.66 -8.86 16 24 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.25 -10.28 6.83 99.48 0.68 -9.60 16 26 C -0.13 -6.26 9.26 22.73 0.21 -6.05 16 27 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.06 0.71 6.45 -2.39 -0.02 0.70 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 0.81 7.07 -2.39 -0.02 0.80 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.86 6.98 -2.38 -0.02 0.84 16 34 H 0.06 0.90 7.63 -2.39 -0.02 0.88 16 35 H 0.08 1.07 5.58 -2.39 -0.01 1.06 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.86 8.05 -2.39 -0.02 1.84 16 38 H 0.12 2.00 5.85 -2.38 -0.01 1.98 16 39 H 0.42 9.37 8.13 -96.75 -0.79 8.59 16 40 H 0.14 4.37 7.60 -2.91 -0.02 4.34 16 41 H 0.15 4.27 8.06 -2.91 -0.02 4.24 16 42 H 0.11 4.86 4.26 -2.91 -0.01 4.84 16 43 H 0.28 15.16 8.73 -92.71 -0.81 14.35 16 44 H 0.11 5.04 7.60 -2.91 -0.02 5.01 16 Total: -1.00 -66.17 360.27 0.11 -66.06 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.12 Total: 30.62 kcal Atomic # 6 Polarization: -86.94 SS G_CDS: 3.66 Total: -83.27 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -0.66 Total: -73.98 kcal Atomic # 8 Polarization: -76.45 SS G_CDS: -4.39 Total: -80.84 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.70 Total: 47.63 kcal Atomic # 16 Polarization: 94.12 SS G_CDS: -0.32 Total: 93.79 kcal Total: -66.17 0.11 -66.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591330495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.729 kcal (2) G-P(sol) polarization free energy of solvation -66.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds