Wall clock time and date at job start Tue Mar 31 2020 13:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47362 * 2 1 4 4 C 1.52992 * 109.47212 * 120.00297 * 2 1 3 5 5 C 1.53002 * 115.56018 * 281.13563 * 4 2 1 6 6 C 1.53074 * 117.51672 * 135.43265 * 4 2 1 7 7 C 1.53000 * 59.98617 * 252.52076 * 6 4 2 8 8 H 1.09001 * 117.49596 * 252.49843 * 7 6 4 9 9 N 1.46498 * 117.49870 * 107.49745 * 7 6 4 10 10 S 1.65601 * 119.99897 * 124.94825 * 9 7 6 11 11 O 1.42098 * 106.40312 * 311.46050 * 10 9 7 12 12 O 1.42104 * 106.40058 * 178.53833 * 10 9 7 13 13 C 1.76209 * 107.21786 * 65.00186 * 10 9 7 14 14 C 1.38652 * 119.87352 * 270.02150 * 13 10 9 15 15 C 1.38609 * 120.50078 * 179.97438 * 14 13 10 16 16 C 1.37637 * 120.24959 * 359.75835 * 15 14 13 17 17 C 1.40702 * 119.74159 * 0.51642 * 16 15 14 18 18 C 1.41397 * 120.24353 * 179.74303 * 17 16 15 19 19 H 1.07993 * 119.99843 * 152.88769 * 18 17 16 20 20 C 1.39946 * 119.99633 * 332.88001 * 18 17 16 21 21 N 1.30818 * 120.00647 * 347.76572 * 20 18 17 22 22 Si 1.86802 * 119.99710 * 167.49272 * 20 18 17 23 23 H 1.48501 * 109.47046 * 89.99800 * 22 20 18 24 24 H 1.48496 * 109.47145 * 210.00082 * 22 20 18 25 25 H 1.48499 * 109.47265 * 330.00051 * 22 20 18 26 26 C 1.37596 * 119.87548 * 89.99564 * 13 10 9 27 27 H 1.09001 * 109.46803 * 299.99891 * 1 2 3 28 28 H 1.09004 * 109.47367 * 59.99347 * 1 2 3 29 29 H 1.08997 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46803 * 240.00109 * 2 1 3 31 31 H 1.09005 * 109.46906 * 53.09835 * 3 2 1 32 32 H 1.09000 * 109.47265 * 173.10468 * 3 2 1 33 33 H 1.09008 * 109.47309 * 293.10975 * 3 2 1 34 34 H 1.09010 * 109.47015 * 205.68850 * 5 4 2 35 35 H 1.08992 * 109.47290 * 325.68896 * 5 4 2 36 36 H 1.09004 * 109.47088 * 85.69452 * 5 4 2 37 37 H 1.09000 * 117.49603 * 145.03276 * 6 4 2 38 38 H 1.09005 * 117.52810 * 359.97438 * 6 4 2 39 39 H 0.97002 * 120.00243 * 304.94513 * 9 7 6 40 40 H 1.08006 * 119.75168 * 359.97438 * 14 13 10 41 41 H 1.08005 * 119.87470 * 180.02562 * 15 14 13 42 42 H 1.07999 * 120.13150 * 180.25552 * 16 15 14 43 43 H 0.96991 * 120.00760 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.12525 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 2.0088 0.0959 2.5423 6 6 3.1876 -1.7185 1.0710 7 6 1.7720 -2.2238 1.3563 8 1 1.5730 -2.6301 2.3480 9 7 1.0466 -2.8617 0.2549 10 16 0.4282 -4.3863 0.4439 11 8 1.4747 -5.1794 0.9868 12 8 -0.2368 -4.7030 -0.7714 13 6 -0.8200 -4.2928 1.6842 14 6 -0.4858 -4.4848 3.0160 15 6 -1.4571 -4.4136 4.0024 16 6 -2.7654 -4.1460 3.6691 17 6 -3.1171 -3.9552 2.3201 18 6 -4.4589 -3.6851 1.9653 19 1 -4.6780 -3.1260 1.0677 20 6 -5.5030 -4.1424 2.7773 21 7 -5.2627 -5.0137 3.7230 22 14 -7.2384 -3.5028 2.5156 23 1 -7.9454 -4.3737 1.5425 24 1 -7.9689 -3.5103 3.8084 25 1 -7.1806 -2.1160 1.9877 26 6 -2.1224 -4.0289 1.3273 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.5794 1.9907 0.8218 32 1 3.1231 1.4449 0.1234 33 1 1.7809 1.9195 -0.9453 34 1 2.7647 -0.2833 3.2301 35 1 2.2152 1.1419 2.3162 36 1 1.0241 0.0110 3.0020 37 1 3.9199 -1.7919 1.8750 38 1 3.5792 -1.8612 0.0637 39 1 0.9285 -2.3911 -0.5850 40 1 0.5390 -4.6915 3.2871 41 1 -1.1855 -4.5645 5.0368 42 1 -3.5199 -4.0869 4.4395 43 1 -5.9862 -5.3304 4.2860 44 1 -2.3804 -3.8797 0.2893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591330496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:50 Heat of formation + Delta-G solvation = -48.509289 kcal Electronic energy + Delta-G solvation = -25885.468413 eV Core-core repulsion = 22315.597419 eV Total energy + Delta-G solvation = -3569.870994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.38236 -37.65184 -36.64493 -35.29873 -34.11074 -33.82607 -32.14845 -30.07759 -29.79747 -28.04668 -27.03420 -25.49828 -22.73036 -22.08849 -21.86236 -20.98910 -19.15020 -18.55741 -17.97186 -17.01279 -16.36647 -15.92699 -15.20907 -14.95468 -14.78133 -14.59880 -14.00606 -13.91510 -13.47763 -13.46009 -13.31847 -12.89199 -12.58494 -12.45608 -12.01864 -11.93370 -11.79852 -11.73271 -11.62375 -11.53336 -11.49652 -11.37967 -11.35252 -11.13895 -11.04344 -10.95022 -10.88154 -10.61340 -10.59204 -9.78974 -9.69043 -9.52359 -9.38568 -8.77316 -8.03913 -7.67778 -6.87939 -4.55213 0.99549 2.18776 2.62639 3.00157 3.02627 3.07018 3.48893 3.72321 3.83731 4.26168 4.45139 4.56559 4.63376 4.77706 4.90265 5.08065 5.19953 5.26090 5.30841 5.39175 5.42561 5.63173 5.76467 5.77638 5.80605 5.83881 5.88755 5.97806 6.03341 6.04817 6.14415 6.19657 6.30766 6.37092 6.44439 6.64324 6.76279 6.82884 7.04036 7.15794 7.22234 7.36625 7.71396 7.80954 7.94314 8.40252 8.67802 8.71550 10.06828 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.004155 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.671933 B = 6737.430508 C = 7504.971142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.059 4.059 3 C -0.144 4.144 4 C -0.122 4.122 5 C -0.120 4.120 6 C -0.185 4.185 7 C 0.104 3.896 8 H 0.134 0.866 9 N -1.091 6.091 10 S 2.688 3.312 11 O -0.971 6.971 12 O -0.972 6.972 13 C -0.631 4.631 14 C -0.146 4.146 15 C -0.122 4.122 16 C -0.113 4.113 17 C 0.091 3.909 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.801 5.801 22 Si 0.914 3.086 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.260 1.260 26 C -0.121 4.121 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.413 0.587 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.128 0.872 43 H 0.283 0.717 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.740 10.567 -2.310 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.078 4.078 3 C -0.201 4.201 4 C -0.124 4.124 5 C -0.178 4.178 6 C -0.224 4.224 7 C -0.005 4.005 8 H 0.152 0.848 9 N -0.846 5.846 10 S 2.784 3.216 11 O -0.961 6.961 12 O -0.962 6.962 13 C -0.724 4.724 14 C -0.167 4.167 15 C -0.142 4.142 16 C -0.132 4.132 17 C 0.088 3.912 18 C -0.490 4.490 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.426 5.426 22 Si 0.738 3.262 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.184 1.184 26 C -0.142 4.142 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.248 0.752 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.145 0.855 43 H 0.094 0.906 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.911 9.556 -2.462 14.712 hybrid contribution -1.370 0.590 0.154 1.499 sum 9.542 10.147 -2.309 14.118 Atomic orbital electron populations 1.21944 0.94355 1.03099 1.01799 1.20604 0.96108 0.95694 0.95347 1.21855 1.00891 0.95774 1.01571 1.21939 1.02454 0.90628 0.97357 1.21444 1.02334 0.99604 0.94374 1.23742 0.92194 1.03190 1.03315 1.21402 0.94167 0.94079 0.90830 0.84831 1.55299 1.70179 1.37175 1.21958 1.01733 0.73847 0.72014 0.74016 1.93520 1.56004 1.66127 1.80467 1.93546 1.75822 1.81917 1.44916 1.29705 1.11968 1.19278 1.11402 1.20105 0.98281 1.07102 0.91219 1.20825 0.94081 1.01964 0.97308 1.21716 0.94442 0.99983 0.97102 1.17688 0.92794 0.89640 0.91102 1.19593 0.90089 1.31048 1.08237 0.90070 1.25917 1.01848 0.92936 0.93719 1.69738 1.35036 1.21995 1.15871 0.86216 0.80854 0.80460 0.78688 1.19338 1.20048 1.18414 1.20773 0.91352 1.03627 0.98455 0.92272 0.92820 0.91487 0.91353 0.92255 0.92683 0.92909 0.92371 0.91531 0.91734 0.88152 0.88574 0.75172 0.87621 0.88381 0.85475 0.90625 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.88 37.16 0.33 -1.42 16 2 C -0.06 -0.59 2.22 -90.62 -0.20 -0.79 16 3 C -0.14 -1.21 8.20 37.16 0.30 -0.91 16 4 C -0.12 -1.29 1.76 -154.47 -0.27 -1.57 16 5 C -0.12 -1.16 9.63 37.16 0.36 -0.80 16 6 C -0.18 -1.98 9.75 -26.69 -0.26 -2.24 16 7 C 0.10 1.35 5.99 -67.93 -0.41 0.94 16 8 H 0.13 1.79 7.92 -51.93 -0.41 1.38 16 9 N -1.09 -15.68 4.90 -4.89 -0.02 -15.70 16 10 S 2.69 50.37 5.73 -107.50 -0.62 49.75 16 11 O -0.97 -19.96 17.03 -57.17 -0.97 -20.93 16 12 O -0.97 -20.55 17.27 -57.17 -0.99 -21.53 16 13 C -0.63 -13.58 5.94 -39.66 -0.24 -13.81 16 14 C -0.15 -3.09 9.31 -39.29 -0.37 -3.46 16 15 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 16 C -0.11 -2.76 8.67 -38.87 -0.34 -3.10 16 17 C 0.09 2.33 5.56 -106.82 -0.59 1.73 16 18 C -0.46 -11.72 9.07 -37.74 -0.34 -12.06 16 19 H 0.08 1.98 7.88 -52.49 -0.41 1.56 16 20 C 0.07 1.76 5.24 -17.34 -0.09 1.67 16 21 N -0.80 -19.95 10.81 55.55 0.60 -19.35 16 22 Si 0.91 18.06 29.58 -169.99 -5.03 13.04 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 26 C -0.12 -2.87 9.26 -38.88 -0.36 -3.23 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.86 6.03 -51.93 -0.31 0.55 16 30 H 0.07 0.66 7.40 -51.93 -0.38 0.28 16 31 H 0.06 0.49 6.78 -51.93 -0.35 0.14 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.06 0.51 7.90 -51.92 -0.41 0.10 16 35 H 0.07 0.56 5.79 -51.93 -0.30 0.26 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 39 H 0.41 5.16 6.48 -34.47 -0.22 4.93 16 40 H 0.11 2.01 7.60 -52.48 -0.40 1.61 16 41 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.13 3.19 6.15 -52.49 -0.32 2.87 16 43 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 44 H 0.11 2.54 7.60 -52.49 -0.40 2.14 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -29.90 366.86 -10.81 -40.71 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -6.44 Total: 10.59 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: -2.87 Total: -42.11 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.58 Total: -35.05 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.96 Total: -42.46 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 50.37 SS G_CDS: -0.62 Total: 49.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.90 -10.81 -40.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591330496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.796 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds