Wall clock time and date at job start Tue Mar 31 2020 13:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47362 * 2 1 4 4 C 1.52992 * 109.47212 * 120.00297 * 2 1 3 5 5 C 1.53002 * 115.56018 * 281.13563 * 4 2 1 6 6 C 1.53074 * 117.51672 * 135.43265 * 4 2 1 7 7 C 1.53000 * 59.98617 * 252.52076 * 6 4 2 8 8 H 1.09001 * 117.49596 * 252.49843 * 7 6 4 9 9 N 1.46498 * 117.49870 * 107.49745 * 7 6 4 10 10 S 1.65601 * 119.99897 * 124.94825 * 9 7 6 11 11 O 1.42098 * 106.40312 * 311.46050 * 10 9 7 12 12 O 1.42104 * 106.40058 * 178.53833 * 10 9 7 13 13 C 1.76209 * 107.21786 * 65.00186 * 10 9 7 14 14 C 1.38652 * 119.87352 * 270.02150 * 13 10 9 15 15 C 1.38609 * 120.50078 * 179.97438 * 14 13 10 16 16 C 1.37637 * 120.24959 * 359.75835 * 15 14 13 17 17 C 1.40702 * 119.74159 * 0.51642 * 16 15 14 18 18 C 1.41397 * 120.24353 * 179.74303 * 17 16 15 19 19 H 1.07993 * 119.99843 * 152.88769 * 18 17 16 20 20 C 1.39946 * 119.99633 * 332.88001 * 18 17 16 21 21 N 1.30818 * 120.00647 * 347.76572 * 20 18 17 22 22 Si 1.86802 * 119.99710 * 167.49272 * 20 18 17 23 23 H 1.48501 * 109.47046 * 89.99800 * 22 20 18 24 24 H 1.48496 * 109.47145 * 210.00082 * 22 20 18 25 25 H 1.48499 * 109.47265 * 330.00051 * 22 20 18 26 26 C 1.37596 * 119.87548 * 89.99564 * 13 10 9 27 27 H 1.09001 * 109.46803 * 299.99891 * 1 2 3 28 28 H 1.09004 * 109.47367 * 59.99347 * 1 2 3 29 29 H 1.08997 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46803 * 240.00109 * 2 1 3 31 31 H 1.09005 * 109.46906 * 53.09835 * 3 2 1 32 32 H 1.09000 * 109.47265 * 173.10468 * 3 2 1 33 33 H 1.09008 * 109.47309 * 293.10975 * 3 2 1 34 34 H 1.09010 * 109.47015 * 205.68850 * 5 4 2 35 35 H 1.08992 * 109.47290 * 325.68896 * 5 4 2 36 36 H 1.09004 * 109.47088 * 85.69452 * 5 4 2 37 37 H 1.09000 * 117.49603 * 145.03276 * 6 4 2 38 38 H 1.09005 * 117.52810 * 359.97438 * 6 4 2 39 39 H 0.97002 * 120.00243 * 304.94513 * 9 7 6 40 40 H 1.08006 * 119.75168 * 359.97438 * 14 13 10 41 41 H 1.08005 * 119.87470 * 180.02562 * 15 14 13 42 42 H 1.07999 * 120.13150 * 180.25552 * 16 15 14 43 43 H 0.96991 * 120.00760 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.12525 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 2.0088 0.0959 2.5423 6 6 3.1876 -1.7185 1.0710 7 6 1.7720 -2.2238 1.3563 8 1 1.5730 -2.6301 2.3480 9 7 1.0466 -2.8617 0.2549 10 16 0.4282 -4.3863 0.4439 11 8 1.4747 -5.1794 0.9868 12 8 -0.2368 -4.7030 -0.7714 13 6 -0.8200 -4.2928 1.6842 14 6 -0.4858 -4.4848 3.0160 15 6 -1.4571 -4.4136 4.0024 16 6 -2.7654 -4.1460 3.6691 17 6 -3.1171 -3.9552 2.3201 18 6 -4.4589 -3.6851 1.9653 19 1 -4.6780 -3.1260 1.0677 20 6 -5.5030 -4.1424 2.7773 21 7 -5.2627 -5.0137 3.7230 22 14 -7.2384 -3.5028 2.5156 23 1 -7.9454 -4.3737 1.5425 24 1 -7.9689 -3.5103 3.8084 25 1 -7.1806 -2.1160 1.9877 26 6 -2.1224 -4.0289 1.3273 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.5794 1.9907 0.8218 32 1 3.1231 1.4449 0.1234 33 1 1.7809 1.9195 -0.9453 34 1 2.7647 -0.2833 3.2301 35 1 2.2152 1.1419 2.3162 36 1 1.0241 0.0110 3.0020 37 1 3.9199 -1.7919 1.8750 38 1 3.5792 -1.8612 0.0637 39 1 0.9285 -2.3911 -0.5850 40 1 0.5390 -4.6915 3.2871 41 1 -1.1855 -4.5645 5.0368 42 1 -3.5199 -4.0869 4.4395 43 1 -5.9862 -5.3304 4.2860 44 1 -2.3804 -3.8797 0.2893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591330496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:49 Heat of formation + Delta-G solvation = -65.812343 kcal Electronic energy + Delta-G solvation = -25886.218730 eV Core-core repulsion = 22315.597419 eV Total energy + Delta-G solvation = -3570.621311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.28690 -39.45105 -38.26705 -36.92867 -35.65483 -35.05638 -33.17187 -31.90929 -31.58904 -28.88099 -27.80355 -27.35342 -23.71127 -23.53454 -23.08060 -22.73896 -20.65797 -19.63604 -19.45461 -18.48940 -17.72578 -17.42611 -16.86375 -16.55533 -16.27293 -15.68845 -15.27376 -15.12032 -14.90708 -14.78616 -14.31810 -14.22969 -13.75544 -13.68565 -13.30438 -13.26116 -13.24263 -13.10201 -13.09035 -13.03452 -12.89364 -12.77664 -12.61186 -12.59607 -12.40229 -12.20655 -11.95597 -11.84729 -11.54532 -11.39622 -11.29927 -11.17053 -10.55515 -9.86707 -9.80871 -9.52784 -8.68880 -6.46866 -0.52817 0.40434 0.83987 1.37169 1.44618 1.51417 2.07401 2.18300 2.54988 2.72509 2.92078 3.42490 3.51470 3.70617 3.84976 3.93216 4.08249 4.19466 4.31240 4.41892 4.42656 4.47896 4.62508 4.84321 4.87323 4.90856 4.94721 4.99873 5.02298 5.05654 5.06182 5.11855 5.20808 5.21897 5.29289 5.34193 5.41510 5.41684 5.51469 5.55445 5.63702 5.88335 5.94904 6.03924 6.10896 6.53118 6.81083 6.84688 8.28200 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.004155 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.671933 B = 6737.430508 C = 7504.971142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.110 4.110 5 C -0.122 4.122 6 C -0.169 4.169 7 C 0.066 3.934 8 H 0.127 0.873 9 N -1.074 6.074 10 S 2.719 3.281 11 O -0.984 6.984 12 O -0.997 6.997 13 C -0.638 4.638 14 C -0.142 4.142 15 C -0.124 4.124 16 C -0.134 4.134 17 C 0.062 3.938 18 C -0.497 4.497 19 H 0.079 0.921 20 C 0.034 3.966 21 N -0.831 5.831 22 Si 0.985 3.015 23 H -0.265 1.265 24 H -0.264 1.264 25 H -0.257 1.257 26 C -0.140 4.140 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.423 0.577 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.290 0.710 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.226 11.906 -2.355 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.079 4.079 3 C -0.197 4.197 4 C -0.113 4.113 5 C -0.179 4.179 6 C -0.208 4.208 7 C -0.042 4.042 8 H 0.145 0.855 9 N -0.834 5.834 10 S 2.812 3.188 11 O -0.974 6.974 12 O -0.987 6.987 13 C -0.727 4.727 14 C -0.163 4.163 15 C -0.143 4.143 16 C -0.154 4.154 17 C 0.059 3.941 18 C -0.527 4.527 19 H 0.097 0.903 20 C -0.180 4.180 21 N -0.458 5.458 22 Si 0.806 3.194 23 H -0.190 1.190 24 H -0.189 1.189 25 H -0.181 1.181 26 C -0.161 4.161 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.261 0.739 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.133 0.867 43 H 0.101 0.899 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.391 10.895 -2.486 16.686 hybrid contribution -1.666 0.197 0.163 1.685 sum 10.726 11.091 -2.323 15.603 Atomic orbital electron populations 1.21960 0.95653 1.01801 1.02026 1.20648 0.94946 0.96997 0.95271 1.21822 1.01424 0.94372 1.02080 1.22034 1.01755 0.89379 0.98107 1.21488 1.01965 1.00454 0.93974 1.23847 0.91251 1.01331 1.04387 1.21675 0.96369 0.96095 0.90020 0.85499 1.54834 1.69642 1.35954 1.22976 1.00781 0.72787 0.72692 0.72541 1.93498 1.55784 1.67492 1.80617 1.93505 1.76472 1.83124 1.45640 1.30185 1.12156 1.17567 1.12758 1.20484 0.99357 1.05528 0.90946 1.21155 0.93219 1.00755 0.99142 1.21712 0.95427 1.01682 0.96557 1.18036 0.93562 0.90424 0.92048 1.19855 0.91045 1.32590 1.09199 0.90307 1.26747 1.05632 0.92572 0.93069 1.69788 1.36599 1.22740 1.16637 0.85153 0.75595 0.79744 0.78955 1.18976 1.18851 1.18074 1.20833 0.92273 1.04893 0.98147 0.92869 0.91859 0.93509 0.90825 0.92104 0.91695 0.92239 0.91303 0.90004 0.93072 0.86495 0.87760 0.73905 0.84988 0.85479 0.86680 0.89894 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.88 71.98 0.64 -2.79 16 2 C -0.06 -1.08 2.22 -10.80 -0.02 -1.10 16 3 C -0.14 -1.97 8.20 71.98 0.59 -1.38 16 4 C -0.11 -2.11 1.76 -52.16 -0.09 -2.20 16 5 C -0.12 -2.07 9.63 71.98 0.69 -1.38 16 6 C -0.17 -3.11 9.75 30.62 0.30 -2.81 16 7 C 0.07 1.61 5.99 44.99 0.27 1.88 16 8 H 0.13 3.24 7.92 -2.39 -0.02 3.22 16 9 N -1.07 -29.84 4.90 -169.38 -0.83 -30.67 16 10 S 2.72 100.74 5.73 -56.49 -0.32 100.42 16 11 O -0.98 -39.20 17.03 -128.00 -2.18 -41.38 16 12 O -1.00 -42.30 17.27 -128.00 -2.21 -44.51 16 13 C -0.64 -27.62 5.94 22.22 0.13 -27.48 16 14 C -0.14 -5.95 9.31 22.46 0.21 -5.74 16 15 C -0.12 -5.43 10.02 22.22 0.22 -5.21 16 16 C -0.13 -6.77 8.67 22.73 0.20 -6.57 16 17 C 0.06 3.32 5.56 -21.29 -0.12 3.20 16 18 C -0.50 -26.38 9.07 23.46 0.21 -26.17 16 19 H 0.08 4.03 7.88 -2.91 -0.02 4.00 16 20 C 0.03 1.68 5.24 85.26 0.45 2.12 16 21 N -0.83 -42.47 10.81 21.83 0.24 -42.24 16 22 Si 0.99 37.46 29.58 68.60 2.03 39.49 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 24 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 25 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 26 C -0.14 -6.90 9.26 22.73 0.21 -6.69 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.05 1.20 6.03 -2.39 -0.01 1.18 16 30 H 0.07 1.25 7.40 -2.39 -0.02 1.23 16 31 H 0.06 0.84 6.78 -2.38 -0.02 0.83 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.07 1.02 7.90 -2.38 -0.02 1.00 16 35 H 0.08 1.15 5.79 -2.39 -0.01 1.13 16 36 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.12 1.79 8.05 -2.39 -0.02 1.77 16 38 H 0.10 1.78 8.10 -2.38 -0.02 1.77 16 39 H 0.42 10.15 6.48 -96.74 -0.63 9.52 16 40 H 0.13 4.78 7.60 -2.91 -0.02 4.75 16 41 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.12 6.01 6.15 -2.91 -0.02 5.99 16 43 H 0.29 13.37 8.30 -92.72 -0.77 12.61 16 44 H 0.11 5.20 7.60 -2.91 -0.02 5.18 16 Total: -1.00 -65.15 366.86 0.99 -64.16 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: 0.38 Total: 37.05 kcal Atomic # 6 Polarization: -86.21 SS G_CDS: 3.89 Total: -82.32 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -0.59 Total: -72.91 kcal Atomic # 8 Polarization: -81.50 SS G_CDS: -4.39 Total: -85.89 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Atomic # 16 Polarization: 100.74 SS G_CDS: -0.32 Total: 100.42 kcal Total: -65.15 0.99 -64.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591330496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.652 kcal (2) G-P(sol) polarization free energy of solvation -65.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds