Wall clock time and date at job start Tue Mar 31 2020 13:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47545 * 2 1 4 4 C 1.53002 * 109.47237 * 120.00370 * 2 1 3 5 5 C 1.53006 * 115.55830 * 325.68460 * 4 2 1 6 6 C 1.53070 * 117.51366 * 111.38482 * 4 2 1 7 7 C 1.52993 * 117.49988 * 179.97438 * 4 2 1 8 8 H 1.09000 * 117.49665 * 144.99679 * 7 4 2 9 9 N 1.46502 * 117.50319 * 359.97438 * 7 4 2 10 10 S 1.65592 * 120.00424 * 145.08478 * 9 7 4 11 11 O 1.42098 * 106.40209 * 311.46263 * 10 9 7 12 12 O 1.42094 * 106.40708 * 178.53987 * 10 9 7 13 13 C 1.76206 * 107.21903 * 64.99929 * 10 9 7 14 14 C 1.38660 * 119.87160 * 89.99703 * 13 10 9 15 15 C 1.38611 * 120.49588 * 179.72713 * 14 13 10 16 16 C 1.37637 * 120.25071 * 0.27763 * 15 14 13 17 17 C 1.40694 * 119.74405 * 359.97438 * 16 15 14 18 18 C 1.41394 * 120.24101 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00011 * 204.38389 * 18 17 16 20 20 C 1.39947 * 120.00301 * 24.38416 * 18 17 16 21 21 N 1.30818 * 119.99903 * 17.85026 * 20 18 17 22 22 Si 1.86801 * 120.00021 * 197.85305 * 20 18 17 23 23 H 1.48504 * 109.46947 * 94.69248 * 22 20 18 24 24 H 1.48498 * 109.47332 * 214.69281 * 22 20 18 25 25 H 1.48505 * 109.47116 * 334.69253 * 22 20 18 26 26 C 1.37599 * 119.87799 * 270.28489 * 13 10 9 27 27 H 1.08995 * 109.46807 * 300.00355 * 1 2 3 28 28 H 1.09000 * 109.46738 * 59.99352 * 1 2 3 29 29 H 1.08994 * 109.47611 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47014 * 239.99859 * 2 1 3 31 31 H 1.08999 * 109.47745 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47121 * 300.00196 * 3 2 1 33 33 H 1.09008 * 109.47080 * 59.99899 * 3 2 1 34 34 H 1.08996 * 109.46930 * 274.31416 * 5 4 2 35 35 H 1.09001 * 109.47092 * 34.31106 * 5 4 2 36 36 H 1.09001 * 109.46826 * 154.31059 * 5 4 2 37 37 H 1.08993 * 117.51640 * 0.02562 * 6 4 2 38 38 H 1.09001 * 117.49607 * 214.96449 * 6 4 2 39 39 H 0.96999 * 119.99666 * 325.08654 * 9 7 4 40 40 H 1.07994 * 119.75118 * 0.02562 * 14 13 10 41 41 H 1.08003 * 119.87500 * 180.30641 * 15 14 13 42 42 H 1.08004 * 120.12453 * 179.97438 * 16 15 14 43 43 H 0.97000 * 120.00246 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.12503 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.1852 -0.5487 2.5064 6 6 2.7425 -2.0669 1.0515 7 6 3.5550 -0.8287 1.4339 8 1 3.9429 -0.7757 2.4512 9 7 4.4064 -0.2335 0.4009 10 16 5.8449 0.4722 0.8188 11 8 5.5652 1.3375 1.9107 12 8 6.4406 0.9168 -0.3923 13 6 6.8875 -0.8015 1.4478 14 6 7.7171 -1.5032 0.5864 15 6 8.5466 -2.5038 1.0681 16 6 8.5508 -2.8154 2.4087 17 6 7.7092 -2.1136 3.2911 18 6 7.7054 -2.4248 4.6704 19 1 6.8363 -2.2025 5.2718 20 6 8.8279 -3.0208 5.2564 21 7 9.9849 -2.9763 4.6476 22 14 8.6740 -3.8799 6.9080 23 1 8.4483 -5.3317 6.6916 24 1 9.9233 -3.6838 7.6864 25 1 7.5278 -3.3073 7.6589 26 6 6.8708 -1.1001 2.7909 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.4777 0.3661 3.0218 35 1 0.1339 -0.4871 2.2253 36 1 1.3351 -1.4022 3.1677 37 1 2.8416 -2.4381 0.0316 38 1 2.5954 -2.8287 1.8172 39 1 4.1273 -0.2528 -0.5279 40 1 7.7206 -1.2650 -0.4670 41 1 9.1924 -3.0406 0.3890 42 1 9.1976 -3.5958 2.7818 43 1 10.7628 -3.3897 5.0535 44 1 6.2207 -0.5552 3.4593 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591330497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:53 Heat of formation + Delta-G solvation = -45.821158 kcal Electronic energy + Delta-G solvation = -25768.273394 eV Core-core repulsion = 22198.518966 eV Total energy + Delta-G solvation = -3569.754428 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.37643 -37.64889 -36.65433 -35.31152 -34.12265 -33.84957 -32.17824 -30.09038 -29.80680 -28.13557 -26.94701 -25.49707 -22.71097 -22.05354 -21.90029 -20.98191 -19.20981 -18.57795 -17.94196 -17.01452 -16.29775 -15.91321 -15.34094 -14.95775 -14.72404 -14.64280 -14.02229 -13.85321 -13.56609 -13.41174 -13.35301 -12.93664 -12.60275 -12.51732 -11.99996 -11.89134 -11.76671 -11.69952 -11.60911 -11.52412 -11.48122 -11.41157 -11.34300 -11.16683 -11.08607 -11.02536 -10.87393 -10.61039 -10.60266 -9.76472 -9.68100 -9.57600 -9.36813 -8.65410 -8.04548 -7.71559 -6.93275 -4.54589 0.98600 2.18767 2.61830 2.99309 3.03316 3.05204 3.49354 3.77944 3.81946 4.23425 4.43011 4.57727 4.65960 4.81928 4.91303 5.06826 5.17710 5.26691 5.33080 5.39215 5.42273 5.59743 5.76759 5.79155 5.81646 5.85558 5.87624 5.96977 6.03697 6.03866 6.16714 6.19500 6.31440 6.34256 6.43760 6.63659 6.74548 6.83557 7.02493 7.14703 7.21997 7.37001 7.71778 7.78998 7.93063 8.38913 8.66048 8.70634 10.02419 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.003971 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.027092 B = 7050.234580 C = 8113.074351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 C -0.154 4.154 4 C -0.130 4.130 5 C -0.122 4.122 6 C -0.179 4.179 7 C 0.106 3.894 8 H 0.138 0.862 9 N -1.089 6.089 10 S 2.688 3.312 11 O -0.967 6.967 12 O -0.975 6.975 13 C -0.629 4.629 14 C -0.145 4.145 15 C -0.121 4.121 16 C -0.117 4.117 17 C 0.092 3.908 18 C -0.461 4.461 19 H 0.083 0.917 20 C 0.075 3.925 21 N -0.793 5.793 22 Si 0.912 3.088 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.260 1.260 26 C -0.128 4.128 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.413 0.587 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.283 0.717 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.141 0.571 -5.708 15.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 C -0.212 4.212 4 C -0.133 4.133 5 C -0.179 4.179 6 C -0.219 4.219 7 C -0.003 4.003 8 H 0.155 0.845 9 N -0.842 5.842 10 S 2.784 3.216 11 O -0.957 6.957 12 O -0.966 6.966 13 C -0.721 4.721 14 C -0.167 4.167 15 C -0.141 4.141 16 C -0.137 4.137 17 C 0.089 3.911 18 C -0.490 4.490 19 H 0.101 0.899 20 C -0.143 4.143 21 N -0.418 5.418 22 Si 0.736 3.264 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.149 4.149 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.247 0.753 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.143 0.857 43 H 0.094 0.906 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.620 1.463 -5.579 14.791 hybrid contribution 0.346 -1.249 0.493 1.387 sum -13.273 0.214 -5.086 14.216 Atomic orbital electron populations 1.21900 0.95165 1.01603 1.01612 1.20565 0.95480 0.95934 0.95464 1.21969 1.02162 0.95482 1.01546 1.22029 0.94063 0.99703 0.97476 1.21482 0.99305 1.02187 0.94937 1.23685 1.03573 0.91387 1.03215 1.21416 0.88174 0.98564 0.92151 0.84470 1.55295 1.37074 1.76185 1.15688 1.01748 0.72293 0.74345 0.73241 1.93542 1.84248 1.62948 1.54929 1.93526 1.75946 1.80470 1.46637 1.29715 1.17521 1.21350 1.03555 1.20078 1.00054 0.99499 0.97037 1.20814 0.99028 0.98271 0.95945 1.21652 1.00666 0.99858 0.91523 1.17668 0.90541 0.89308 0.93586 1.19615 1.00730 1.34915 0.93748 0.89915 1.25937 0.94373 0.94066 0.99949 1.69782 0.99931 1.33144 1.38981 0.86233 0.79034 0.80125 0.81020 1.19247 1.20160 1.18369 1.20723 1.03724 0.98475 0.91989 0.92102 0.92996 0.92673 0.91368 0.91951 0.93004 0.92376 0.91924 0.91436 0.92239 0.88515 0.87979 0.75308 0.87659 0.88390 0.85740 0.90551 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.20 37.16 0.30 -0.90 16 2 C -0.06 -0.55 2.38 -90.62 -0.22 -0.77 16 3 C -0.15 -1.68 8.92 37.15 0.33 -1.35 16 4 C -0.13 -1.42 1.91 -154.47 -0.30 -1.71 16 5 C -0.12 -1.20 9.49 37.16 0.35 -0.85 16 6 C -0.18 -2.01 9.75 -26.72 -0.26 -2.27 16 7 C 0.11 1.41 5.98 -67.95 -0.41 1.01 16 8 H 0.14 1.98 8.11 -51.93 -0.42 1.56 16 9 N -1.09 -15.47 3.85 -4.91 -0.02 -15.49 16 10 S 2.69 50.20 5.71 -107.50 -0.61 49.59 16 11 O -0.97 -20.26 17.03 -57.17 -0.97 -21.23 16 12 O -0.98 -19.94 17.27 -57.17 -0.99 -20.93 16 13 C -0.63 -13.65 5.94 -39.66 -0.24 -13.89 16 14 C -0.15 -3.17 9.53 -39.29 -0.37 -3.55 16 15 C -0.12 -2.72 10.02 -39.66 -0.40 -3.12 16 16 C -0.12 -2.90 8.70 -38.87 -0.34 -3.24 16 17 C 0.09 2.35 5.57 -106.83 -0.60 1.76 16 18 C -0.46 -11.64 9.05 -37.74 -0.34 -11.98 16 19 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 20 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 21 N -0.79 -19.69 10.95 55.55 0.61 -19.08 16 22 Si 0.91 17.86 29.60 -169.99 -5.03 12.83 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 24 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 26 C -0.13 -3.01 9.26 -38.88 -0.36 -3.37 16 27 H 0.06 0.49 6.45 -51.93 -0.33 0.15 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.65 7.63 -51.92 -0.40 0.25 16 31 H 0.06 0.77 5.55 -51.93 -0.29 0.48 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.56 5.59 -51.93 -0.29 0.27 16 36 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16 37 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 38 H 0.10 1.08 8.05 -51.93 -0.42 0.67 16 39 H 0.41 4.91 7.64 -34.46 -0.26 4.65 16 40 H 0.11 2.08 7.60 -52.49 -0.40 1.69 16 41 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 42 H 0.12 3.13 6.16 -52.48 -0.32 2.81 16 43 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 44 H 0.11 2.47 7.61 -52.49 -0.40 2.08 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -29.82 366.88 -10.86 -40.68 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -6.45 Total: 10.62 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: -2.92 Total: -42.50 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.59 Total: -34.57 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.96 Total: -42.16 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 50.20 SS G_CDS: -0.61 Total: 49.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.82 -10.86 -40.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591330497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.145 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds