Wall clock time and date at job start Tue Mar 31 2020 13:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47545 * 2 1 4 4 C 1.53002 * 109.47237 * 120.00370 * 2 1 3 5 5 C 1.53006 * 115.55830 * 325.68460 * 4 2 1 6 6 C 1.53070 * 117.51366 * 111.38482 * 4 2 1 7 7 C 1.52993 * 117.49988 * 179.97438 * 4 2 1 8 8 H 1.09000 * 117.49665 * 144.99679 * 7 4 2 9 9 N 1.46502 * 117.50319 * 359.97438 * 7 4 2 10 10 S 1.65592 * 120.00424 * 145.08478 * 9 7 4 11 11 O 1.42098 * 106.40209 * 311.46263 * 10 9 7 12 12 O 1.42094 * 106.40708 * 178.53987 * 10 9 7 13 13 C 1.76206 * 107.21903 * 64.99929 * 10 9 7 14 14 C 1.38660 * 119.87160 * 89.99703 * 13 10 9 15 15 C 1.38611 * 120.49588 * 179.72713 * 14 13 10 16 16 C 1.37637 * 120.25071 * 0.27763 * 15 14 13 17 17 C 1.40694 * 119.74405 * 359.97438 * 16 15 14 18 18 C 1.41394 * 120.24101 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00011 * 204.38389 * 18 17 16 20 20 C 1.39947 * 120.00301 * 24.38416 * 18 17 16 21 21 N 1.30818 * 119.99903 * 17.85026 * 20 18 17 22 22 Si 1.86801 * 120.00021 * 197.85305 * 20 18 17 23 23 H 1.48504 * 109.46947 * 94.69248 * 22 20 18 24 24 H 1.48498 * 109.47332 * 214.69281 * 22 20 18 25 25 H 1.48505 * 109.47116 * 334.69253 * 22 20 18 26 26 C 1.37599 * 119.87799 * 270.28489 * 13 10 9 27 27 H 1.08995 * 109.46807 * 300.00355 * 1 2 3 28 28 H 1.09000 * 109.46738 * 59.99352 * 1 2 3 29 29 H 1.08994 * 109.47611 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47014 * 239.99859 * 2 1 3 31 31 H 1.08999 * 109.47745 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47121 * 300.00196 * 3 2 1 33 33 H 1.09008 * 109.47080 * 59.99899 * 3 2 1 34 34 H 1.08996 * 109.46930 * 274.31416 * 5 4 2 35 35 H 1.09001 * 109.47092 * 34.31106 * 5 4 2 36 36 H 1.09001 * 109.46826 * 154.31059 * 5 4 2 37 37 H 1.08993 * 117.51640 * 0.02562 * 6 4 2 38 38 H 1.09001 * 117.49607 * 214.96449 * 6 4 2 39 39 H 0.96999 * 119.99666 * 325.08654 * 9 7 4 40 40 H 1.07994 * 119.75118 * 0.02562 * 14 13 10 41 41 H 1.08003 * 119.87500 * 180.30641 * 15 14 13 42 42 H 1.08004 * 120.12453 * 179.97438 * 16 15 14 43 43 H 0.97000 * 120.00246 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.12503 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.1852 -0.5487 2.5064 6 6 2.7425 -2.0669 1.0515 7 6 3.5550 -0.8287 1.4339 8 1 3.9429 -0.7757 2.4512 9 7 4.4064 -0.2335 0.4009 10 16 5.8449 0.4722 0.8188 11 8 5.5652 1.3375 1.9107 12 8 6.4406 0.9168 -0.3923 13 6 6.8875 -0.8015 1.4478 14 6 7.7171 -1.5032 0.5864 15 6 8.5466 -2.5038 1.0681 16 6 8.5508 -2.8154 2.4087 17 6 7.7092 -2.1136 3.2911 18 6 7.7054 -2.4248 4.6704 19 1 6.8363 -2.2025 5.2718 20 6 8.8279 -3.0208 5.2564 21 7 9.9849 -2.9763 4.6476 22 14 8.6740 -3.8799 6.9080 23 1 8.4483 -5.3317 6.6916 24 1 9.9233 -3.6838 7.6864 25 1 7.5278 -3.3073 7.6589 26 6 6.8708 -1.1001 2.7909 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.4777 0.3661 3.0218 35 1 0.1339 -0.4871 2.2253 36 1 1.3351 -1.4022 3.1677 37 1 2.8416 -2.4381 0.0316 38 1 2.5954 -2.8287 1.8172 39 1 4.1273 -0.2528 -0.5279 40 1 7.7206 -1.2650 -0.4670 41 1 9.1924 -3.0406 0.3890 42 1 9.1976 -3.5958 2.7818 43 1 10.7628 -3.3897 5.0535 44 1 6.2207 -0.5552 3.4593 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591330497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:52 Heat of formation + Delta-G solvation = -62.908320 kcal Electronic energy + Delta-G solvation = -25769.014349 eV Core-core repulsion = 22198.518966 eV Total energy + Delta-G solvation = -3570.495383 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.30667 -39.45107 -38.27048 -36.93927 -35.67610 -35.05948 -33.20265 -31.92415 -31.59986 -28.99192 -27.68733 -27.34933 -23.69452 -23.54570 -23.11066 -22.73349 -20.71783 -19.74554 -19.35316 -18.50048 -17.71956 -17.35342 -16.98114 -16.48851 -16.28020 -15.72145 -15.30640 -15.09863 -14.95567 -14.73560 -14.35374 -14.29590 -13.75770 -13.70325 -13.32265 -13.30786 -13.23708 -13.13426 -13.08815 -13.04872 -12.86878 -12.75969 -12.60188 -12.57930 -12.29430 -12.19606 -11.97920 -11.88417 -11.54525 -11.38889 -11.30964 -11.14973 -10.60380 -9.87677 -9.71331 -9.56809 -8.73314 -6.45265 -0.53925 0.39930 0.83577 1.37735 1.46300 1.51563 2.06892 2.17911 2.53656 2.73055 2.89579 3.41912 3.52713 3.71805 3.84661 3.93787 4.09733 4.11661 4.30729 4.41182 4.43231 4.49214 4.64072 4.83019 4.88609 4.89157 4.93152 4.99321 5.01485 5.06051 5.06904 5.11241 5.20280 5.22596 5.27796 5.32089 5.40507 5.43060 5.51880 5.55557 5.64696 5.88209 5.93276 6.05969 6.10427 6.52276 6.79784 6.84335 8.24960 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.003971 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.027092 B = 7050.234580 C = 8113.074351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.158 4.158 4 C -0.113 4.113 5 C -0.125 4.125 6 C -0.168 4.168 7 C 0.069 3.931 8 H 0.120 0.880 9 N -1.068 6.068 10 S 2.719 3.281 11 O -0.990 6.990 12 O -0.990 6.990 13 C -0.636 4.636 14 C -0.150 4.150 15 C -0.123 4.123 16 C -0.141 4.141 17 C 0.064 3.936 18 C -0.496 4.496 19 H 0.082 0.918 20 C 0.036 3.964 21 N -0.825 5.825 22 Si 0.984 3.016 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.257 1.257 26 C -0.143 4.143 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.426 0.574 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.291 0.709 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.919 0.040 -6.453 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.216 4.216 4 C -0.116 4.116 5 C -0.182 4.182 6 C -0.207 4.207 7 C -0.039 4.039 8 H 0.138 0.862 9 N -0.827 5.827 10 S 2.812 3.188 11 O -0.980 6.980 12 O -0.980 6.980 13 C -0.725 4.725 14 C -0.171 4.171 15 C -0.142 4.142 16 C -0.161 4.161 17 C 0.061 3.939 18 C -0.525 4.525 19 H 0.100 0.900 20 C -0.179 4.179 21 N -0.451 5.451 22 Si 0.805 3.195 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.181 1.181 26 C -0.164 4.164 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.264 0.736 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.131 0.869 43 H 0.102 0.898 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.379 0.916 -6.338 16.659 hybrid contribution 0.829 -1.017 0.616 1.449 sum -14.550 -0.101 -5.723 15.635 Atomic orbital electron populations 1.21873 0.93550 1.02285 1.02247 1.20635 0.96826 0.95086 0.95065 1.22008 1.01003 0.96440 1.02128 1.22139 0.91901 0.99123 0.98427 1.21548 1.00236 1.01942 0.94504 1.23771 1.01803 0.91154 1.04005 1.21569 0.89705 1.01361 0.91231 0.86229 1.54774 1.35179 1.76032 1.16755 1.00797 0.72424 0.73373 0.72226 1.93510 1.84690 1.63608 1.56179 1.93496 1.77039 1.80664 1.46793 1.30221 1.17846 1.21507 1.02965 1.20447 0.99389 0.98979 0.98253 1.21135 0.99157 0.98397 0.95531 1.21654 1.01390 1.00425 0.92618 1.18026 0.91430 0.90145 0.94268 1.19886 1.01558 1.36870 0.94168 0.89974 1.26785 0.93527 0.93985 1.03641 1.69827 1.00699 1.33725 1.40806 0.85148 0.79135 0.78999 0.76231 1.18361 1.19388 1.18060 1.20804 1.03912 0.98577 0.93059 0.91870 0.92056 0.91941 0.90567 0.93736 0.91506 0.92826 0.92727 0.89496 0.91980 0.87318 0.87416 0.73612 0.85295 0.85652 0.86883 0.89769 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.20 71.98 0.59 -1.32 16 2 C -0.06 -0.99 2.38 -10.79 -0.03 -1.02 16 3 C -0.16 -3.16 8.92 71.98 0.64 -2.52 16 4 C -0.11 -2.26 1.91 -52.16 -0.10 -2.36 16 5 C -0.13 -2.25 9.49 71.98 0.68 -1.57 16 6 C -0.17 -3.46 9.75 30.60 0.30 -3.16 16 7 C 0.07 1.81 5.98 44.97 0.27 2.08 16 8 H 0.12 3.55 8.11 -2.39 -0.02 3.54 16 9 N -1.07 -29.37 3.85 -169.45 -0.65 -30.02 16 10 S 2.72 100.82 5.71 -56.49 -0.32 100.50 16 11 O -0.99 -41.92 17.03 -128.00 -2.18 -44.10 16 12 O -0.99 -39.44 17.27 -128.00 -2.21 -41.65 16 13 C -0.64 -27.79 5.94 22.22 0.13 -27.66 16 14 C -0.15 -6.45 9.53 22.46 0.21 -6.24 16 15 C -0.12 -5.52 10.02 22.22 0.22 -5.30 16 16 C -0.14 -7.17 8.70 22.73 0.20 -6.97 16 17 C 0.06 3.40 5.57 -21.29 -0.12 3.29 16 18 C -0.50 -25.94 9.05 23.46 0.21 -25.73 16 19 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 20 C 0.04 1.76 5.14 85.26 0.44 2.19 16 21 N -0.82 -41.89 10.95 21.83 0.24 -41.65 16 22 Si 0.98 36.83 29.60 68.60 2.03 38.86 16 23 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 24 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 25 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 26 C -0.14 -6.93 9.26 22.73 0.21 -6.72 16 27 H 0.06 0.82 6.45 -2.39 -0.02 0.81 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.21 7.63 -2.38 -0.02 1.19 16 31 H 0.04 1.04 5.55 -2.39 -0.01 1.03 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.23 5.59 -2.39 -0.01 1.22 16 36 H 0.06 1.08 7.90 -2.39 -0.02 1.06 16 37 H 0.11 1.99 8.05 -2.39 -0.02 1.97 16 38 H 0.11 2.11 8.05 -2.39 -0.02 2.09 16 39 H 0.43 9.41 7.64 -96.75 -0.74 8.67 16 40 H 0.13 4.88 7.60 -2.91 -0.02 4.86 16 41 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 42 H 0.11 5.90 6.16 -2.91 -0.02 5.89 16 43 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 44 H 0.11 5.21 7.61 -2.91 -0.02 5.19 16 Total: -1.00 -64.77 366.88 1.04 -63.73 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: 0.27 Total: 37.37 kcal Atomic # 6 Polarization: -86.89 SS G_CDS: 3.87 Total: -83.02 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -0.41 Total: -71.67 kcal Atomic # 8 Polarization: -81.36 SS G_CDS: -4.39 Total: -85.75 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 16 Polarization: 100.82 SS G_CDS: -0.32 Total: 100.50 kcal Total: -64.77 1.04 -63.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591330497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.821 kcal (2) G-P(sol) polarization free energy of solvation -64.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds