Wall clock time and date at job start Tue Mar 31 2020 13:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47071 * 2 1 4 4 C 1.53002 * 109.47348 * 120.00097 * 2 1 3 5 5 C 1.53001 * 115.54401 * 325.58292 * 4 2 1 6 6 C 1.52997 * 117.49762 * 111.25103 * 4 2 1 7 7 C 1.52996 * 117.50068 * 179.91663 * 4 2 1 8 8 H 1.09007 * 117.49956 * 359.96963 * 7 4 2 9 9 N 1.46499 * 117.50075 * 144.99873 * 7 4 2 10 10 S 1.65601 * 119.99606 * 214.99919 * 9 7 4 11 11 O 1.42102 * 106.39798 * 178.53693 * 10 9 7 12 12 O 1.42101 * 106.40212 * 311.45544 * 10 9 7 13 13 C 1.76202 * 107.22260 * 64.99733 * 10 9 7 14 14 C 1.38651 * 119.87414 * 89.99544 * 13 10 9 15 15 C 1.38616 * 120.50031 * 179.97438 * 14 13 10 16 16 C 1.37638 * 120.24684 * 0.02562 * 15 14 13 17 17 C 1.40697 * 119.74380 * 0.02562 * 16 15 14 18 18 C 1.41400 * 120.24032 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00176 * 155.26590 * 18 17 16 20 20 C 1.39944 * 120.00118 * 335.25012 * 18 17 16 21 21 N 1.30831 * 120.00136 * 342.27091 * 20 18 17 22 22 Si 1.86800 * 119.99833 * 162.25853 * 20 18 17 23 23 H 1.48499 * 109.47011 * 90.01116 * 22 20 18 24 24 H 1.48502 * 109.47101 * 210.00408 * 22 20 18 25 25 H 1.48489 * 109.47305 * 330.00609 * 22 20 18 26 26 C 1.37601 * 119.87474 * 269.72551 * 13 10 9 27 27 H 1.09000 * 109.47441 * 300.00086 * 1 2 3 28 28 H 1.09003 * 109.46835 * 60.00014 * 1 2 3 29 29 H 1.08993 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47026 * 240.00213 * 2 1 3 31 31 H 1.09003 * 109.47195 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46801 * 299.99548 * 3 2 1 33 33 H 1.09000 * 109.47058 * 59.99680 * 3 2 1 34 34 H 1.08996 * 109.47232 * 34.41974 * 5 4 2 35 35 H 1.08998 * 109.46781 * 154.41905 * 5 4 2 36 36 H 1.08998 * 109.47112 * 274.41364 * 5 4 2 37 37 H 1.09000 * 117.49519 * 215.00116 * 6 4 2 38 38 H 1.08994 * 117.50416 * 0.02562 * 6 4 2 39 39 H 0.96997 * 119.99931 * 34.99103 * 9 7 4 40 40 H 1.08003 * 119.75250 * 359.97438 * 14 13 10 41 41 H 1.08002 * 119.87881 * 180.02562 * 15 14 13 42 42 H 1.08002 * 120.12530 * 180.02562 * 16 15 14 43 43 H 0.96998 * 120.00007 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.12500 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.1863 -0.5464 2.5068 6 6 2.7393 -2.0677 1.0515 7 6 3.5550 -0.8298 1.4333 8 1 4.1884 -0.3878 0.6641 9 7 4.0773 -0.7585 2.8002 10 16 5.5327 -0.0249 3.0932 11 8 5.7385 -0.0887 4.4977 12 8 6.4492 -0.5600 2.1482 13 6 5.3465 1.6813 2.6946 14 6 4.9317 2.5768 3.6685 15 6 4.7814 3.9219 3.3693 16 6 5.0427 4.3830 2.0991 17 6 5.4633 3.4832 1.1026 18 6 5.7341 3.9455 -0.2060 19 1 6.4095 3.3951 -0.8442 20 6 5.1266 5.1160 -0.6744 21 7 4.0687 5.5913 -0.0689 22 14 5.8265 5.9999 -2.1638 23 1 5.1896 5.4720 -3.3971 24 1 5.5531 7.4550 -2.0495 25 1 7.2928 5.7753 -2.2288 26 6 5.6188 2.1209 1.4194 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.1348 -0.4854 2.2265 35 1 1.3369 -1.3986 3.1695 36 1 1.4793 0.3693 3.0204 37 1 2.5912 -2.8289 1.8175 38 1 2.8364 -2.4395 0.0316 39 1 3.5705 -1.1409 3.5335 40 1 4.7240 2.2236 4.6678 41 1 4.4581 4.6107 4.1358 42 1 4.9254 5.4316 1.8682 43 1 3.6474 6.4024 -0.3938 44 1 5.9456 1.4223 0.6634 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591330498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:55 Heat of formation + Delta-G solvation = -66.865773 kcal Electronic energy + Delta-G solvation = -26403.416151 eV Core-core repulsion = 22832.749160 eV Total energy + Delta-G solvation = -3570.666991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.21009 -39.41727 -38.26317 -36.93413 -35.64565 -35.47584 -32.47428 -31.89198 -31.57022 -29.46297 -27.66613 -27.31406 -23.67553 -23.36404 -23.12770 -22.70180 -20.69274 -19.64901 -19.40621 -18.47263 -17.70126 -17.26977 -16.93840 -16.47215 -16.27136 -16.10567 -15.29306 -15.15079 -15.04887 -14.35786 -14.29203 -13.88278 -13.72249 -13.67643 -13.58127 -13.32859 -13.24812 -13.20986 -13.06399 -13.02657 -12.86515 -12.80681 -12.71721 -12.58876 -12.24130 -12.20360 -11.94660 -11.85612 -11.54470 -11.38433 -11.27471 -11.11719 -10.58683 -9.86509 -9.74750 -9.52084 -8.70757 -6.41543 -0.51642 0.42895 0.87170 1.37654 1.44041 1.51586 2.07337 2.17915 2.56074 2.74748 2.91375 3.43066 3.55345 3.76657 3.79384 3.97131 4.06621 4.14771 4.32545 4.40488 4.45011 4.51280 4.62718 4.84841 4.86270 4.91367 4.94155 4.98359 5.01367 5.05247 5.08211 5.13246 5.22154 5.24915 5.30633 5.32811 5.42002 5.43008 5.54251 5.58695 5.64658 5.91144 5.95910 6.09056 6.13231 6.55051 6.82738 6.87566 8.26477 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010957 B = 0.005583 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.799613 B = 5013.641738 C = 6433.652489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.056 4.056 3 C -0.136 4.136 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.154 4.154 7 C 0.066 3.934 8 H 0.117 0.883 9 N -1.071 6.071 10 S 2.719 3.281 11 O -0.989 6.989 12 O -0.992 6.992 13 C -0.634 4.634 14 C -0.149 4.149 15 C -0.123 4.123 16 C -0.140 4.140 17 C 0.071 3.929 18 C -0.494 4.494 19 H 0.076 0.924 20 C 0.043 3.957 21 N -0.815 5.815 22 Si 0.974 3.026 23 H -0.261 1.261 24 H -0.265 1.265 25 H -0.262 1.262 26 C -0.137 4.137 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.426 0.574 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.290 0.710 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.754 -9.565 0.418 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 C -0.194 4.194 4 C -0.123 4.123 5 C -0.179 4.179 6 C -0.193 4.193 7 C -0.042 4.042 8 H 0.135 0.865 9 N -0.829 5.829 10 S 2.812 3.188 11 O -0.979 6.979 12 O -0.982 6.982 13 C -0.723 4.723 14 C -0.170 4.170 15 C -0.142 4.142 16 C -0.160 4.160 17 C 0.068 3.932 18 C -0.523 4.523 19 H 0.094 0.906 20 C -0.173 4.173 21 N -0.441 5.441 22 Si 0.795 3.205 23 H -0.186 1.186 24 H -0.190 1.190 25 H -0.186 1.186 26 C -0.159 4.159 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.263 0.737 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.129 0.871 43 H 0.101 0.899 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.050 -9.726 0.603 12.640 hybrid contribution -0.058 1.424 -0.546 1.526 sum -8.108 -8.302 0.057 11.604 Atomic orbital electron populations 1.21845 0.93543 1.02466 1.01810 1.20685 0.96852 0.94260 0.95631 1.21700 1.00400 0.96690 1.00602 1.22067 0.92722 0.99712 0.97830 1.21447 1.00037 1.01748 0.94667 1.23808 1.00562 0.90772 1.04197 1.21564 0.94130 1.05421 0.83084 0.86547 1.54651 1.41035 1.72926 1.14291 1.00759 0.72703 0.73404 0.71925 1.93498 1.84981 1.87630 1.31824 1.93505 1.61753 1.78370 1.64584 1.30150 1.16625 1.23522 1.02043 1.20387 1.05315 0.93666 0.97585 1.21095 1.00840 0.95726 0.96525 1.21603 1.02508 0.99559 0.92315 1.17936 0.90348 0.91125 0.93805 1.19784 1.25161 1.08470 0.98870 0.90553 1.26615 0.93057 0.96559 1.01046 1.69815 1.14881 1.19887 1.39492 0.85311 0.79741 0.77777 0.77653 1.18586 1.18954 1.18619 1.20760 1.05089 0.95817 0.94189 0.92331 0.92752 0.90967 0.90452 0.94463 0.93466 0.94227 0.90006 0.91016 0.93508 0.86541 0.86745 0.73652 0.85509 0.85941 0.87061 0.89885 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.20 71.98 0.59 -2.11 16 2 C -0.06 -1.33 2.98 -10.79 -0.03 -1.37 16 3 C -0.14 -4.46 9.03 71.98 0.65 -3.81 16 4 C -0.12 -2.75 1.90 -52.18 -0.10 -2.85 16 5 C -0.12 -2.47 8.63 71.98 0.62 -1.85 16 6 C -0.15 -3.02 9.75 30.62 0.30 -2.72 16 7 C 0.07 1.80 5.65 45.02 0.25 2.06 16 8 H 0.12 3.68 7.57 -2.38 -0.02 3.66 16 9 N -1.07 -30.05 5.68 -169.27 -0.96 -31.01 16 10 S 2.72 100.50 5.71 -56.49 -0.32 100.18 16 11 O -0.99 -39.01 17.27 -128.00 -2.21 -41.22 16 12 O -0.99 -41.74 17.01 -128.00 -2.18 -43.92 16 13 C -0.63 -27.43 5.94 22.22 0.13 -27.30 16 14 C -0.15 -6.35 9.53 22.46 0.21 -6.14 16 15 C -0.12 -5.47 10.02 22.22 0.22 -5.24 16 16 C -0.14 -7.04 8.70 22.73 0.20 -6.84 16 17 C 0.07 3.70 5.57 -21.29 -0.12 3.58 16 18 C -0.49 -25.57 9.05 23.46 0.21 -25.36 16 19 H 0.08 3.87 7.91 -2.91 -0.02 3.85 16 20 C 0.04 2.08 5.14 85.26 0.44 2.52 16 21 N -0.82 -39.95 10.97 21.83 0.24 -39.71 16 22 Si 0.97 36.71 29.59 68.60 2.03 38.74 16 23 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 24 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 26 C -0.14 -6.60 9.26 22.73 0.21 -6.39 16 27 H 0.06 1.15 6.45 -2.39 -0.02 1.13 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.73 7.90 -2.39 -0.02 1.71 16 31 H 0.04 1.41 7.29 -2.39 -0.02 1.39 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.43 5.59 -2.39 -0.01 1.42 16 35 H 0.07 1.16 7.63 -2.39 -0.02 1.14 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.12 1.84 8.05 -2.39 -0.02 1.82 16 38 H 0.11 1.96 8.05 -2.39 -0.02 1.94 16 39 H 0.43 9.42 8.13 -96.75 -0.79 8.64 16 40 H 0.13 4.79 7.60 -2.91 -0.02 4.76 16 41 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 42 H 0.11 5.76 6.18 -2.91 -0.02 5.74 16 43 H 0.29 12.86 8.30 -92.71 -0.77 12.09 16 44 H 0.11 5.04 7.60 -2.91 -0.02 5.02 16 Total: -1.00 -63.08 369.92 0.61 -62.47 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: 0.22 Total: 38.29 kcal Atomic # 6 Polarization: -87.62 SS G_CDS: 3.79 Total: -83.83 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -0.72 Total: -70.72 kcal Atomic # 8 Polarization: -80.75 SS G_CDS: -4.39 Total: -85.14 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Atomic # 16 Polarization: 100.50 SS G_CDS: -0.32 Total: 100.18 kcal Total: -63.08 0.61 -62.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591330498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.400 kcal (2) G-P(sol) polarization free energy of solvation -63.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds